Wall clock time and date at job start Tue Mar 31 2020 22:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39311 * 119.11521 * 2 1 4 4 C 1.36580 * 119.90485 * 180.02562 * 3 2 1 5 5 C 1.40898 * 118.16124 * 359.95984 * 4 3 2 6 6 C 1.40176 * 121.22716 * 180.02562 * 5 4 3 7 7 C 1.38547 * 119.40100 * 179.97438 * 6 5 4 8 8 C 1.47774 * 119.80465 * 179.97438 * 7 6 5 9 9 O 1.21566 * 119.99514 * 7.56265 * 8 7 6 10 10 N 1.34774 * 120.00068 * 187.55566 * 8 7 6 11 11 C 1.47427 * 125.64517 * 174.16988 * 10 8 7 12 12 C 1.54908 * 104.82975 * 155.83226 * 11 10 8 13 13 C 1.55159 * 101.58250 * 37.00884 * 12 11 10 14 14 H 1.09001 * 110.71909 * 83.03760 * 13 12 11 15 15 N 1.46498 * 110.72033 * 206.13440 * 13 12 11 16 16 C 1.46498 * 120.00086 * 60.00232 * 15 13 12 17 17 C 1.36929 * 120.00171 * 240.00041 * 15 13 12 18 18 H 1.08006 * 120.00312 * 334.69262 * 17 15 13 19 19 C 1.38815 * 120.00167 * 154.41264 * 17 15 13 20 20 N 1.31614 * 120.00076 * 354.50489 * 19 17 15 21 21 Si 1.86799 * 119.99951 * 174.50850 * 19 17 15 22 22 H 1.48494 * 109.47431 * 90.00191 * 21 19 17 23 23 H 1.48507 * 109.47019 * 210.00033 * 21 19 17 24 24 H 1.48498 * 109.47362 * 329.99504 * 21 19 17 25 25 C 1.47023 * 125.64812 * 354.12695 * 10 8 7 26 26 C 1.40623 * 120.39536 * 0.26917 * 7 6 5 27 27 C 1.35709 * 120.92063 * 359.46247 * 26 7 6 28 28 C 1.40758 * 120.10520 * 0.51403 * 27 26 7 29 29 N 1.31125 * 119.11316 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47096 * 269.97247 * 1 2 3 31 31 H 1.08998 * 109.47173 * 29.97681 * 1 2 3 32 32 H 1.09001 * 109.47347 * 149.97685 * 1 2 3 33 33 H 1.07998 * 120.05204 * 359.97438 * 3 2 1 34 34 H 1.08004 * 120.92080 * 180.02562 * 4 3 2 35 35 H 1.07997 * 120.29900 * 359.94892 * 6 5 4 36 36 H 1.09004 * 110.36696 * 36.99133 * 11 10 8 37 37 H 1.08999 * 110.45790 * 274.71494 * 11 10 8 38 38 H 1.09006 * 111.00467 * 278.93699 * 12 11 10 39 39 H 1.08998 * 111.03752 * 155.09914 * 12 11 10 40 40 H 1.08998 * 109.47225 * 274.57220 * 16 15 13 41 41 H 1.09001 * 109.47384 * 34.57045 * 16 15 13 42 42 H 1.08999 * 109.47859 * 154.57215 * 16 15 13 43 43 H 0.96995 * 120.00397 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.88242 * 61.68456 * 25 10 8 45 45 H 1.08993 * 109.88043 * 300.51225 * 25 10 8 46 46 H 1.08003 * 119.54348 * 179.72610 * 26 7 6 47 47 H 1.07993 * 119.94892 * 180.30282 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.2171 0.0000 4 6 3.5505 1.2359 -0.0005 5 6 4.2325 0.0030 -0.0002 6 6 5.6332 -0.0527 -0.0002 7 6 6.2649 -1.2858 0.0007 8 6 7.7410 -1.3549 0.0002 9 8 8.3969 -0.3406 0.1375 10 7 8.3600 -2.5423 -0.1525 11 6 9.8139 -2.7414 -0.2930 12 6 10.0627 -4.1951 0.1810 13 6 8.8022 -4.9195 -0.3612 14 1 8.9343 -5.1918 -1.4083 15 7 8.4975 -6.1036 0.4459 16 6 8.2124 -5.9619 1.8758 17 6 8.4793 -7.3428 -0.1363 18 1 8.2797 -7.4400 -1.1933 19 6 8.7229 -8.4737 0.6308 20 7 9.0776 -8.3495 1.8921 21 14 8.5475 -10.1720 -0.1272 22 1 9.8477 -10.5909 -0.7096 23 1 8.1392 -11.1419 0.9207 24 1 7.5162 -10.1335 -1.1949 25 6 7.6971 -3.8535 -0.2055 26 6 5.5097 -2.4720 -0.0041 27 6 4.1531 -2.4351 0.0012 28 6 3.4805 -1.1987 0.0008 29 7 2.1450 -1.1456 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6313 2.1444 -0.0004 34 1 4.0927 2.1700 -0.0001 35 1 6.2146 0.8574 -0.0012 36 1 10.3560 -2.0382 0.3393 37 1 10.1156 -2.6249 -1.3339 38 1 10.1068 -4.2493 1.2688 39 1 10.9697 -4.6024 -0.2655 40 1 9.1483 -5.9589 2.4344 41 1 7.6826 -5.0252 2.0496 42 1 7.5940 -6.7959 2.2075 43 1 9.2475 -9.1397 2.4283 44 1 7.0212 -3.8929 -1.0596 45 1 7.1428 -4.0262 0.7169 46 1 6.0164 -3.4258 -0.0079 47 1 3.5888 -3.3559 0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972590941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:30 Heat of formation + Delta-G solvation = 75.296463 kcal Electronic energy + Delta-G solvation = -28864.982707 eV Core-core repulsion = 25014.480035 eV Total energy + Delta-G solvation = -3850.502672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16421 -39.98404 -37.69322 -36.98386 -34.85062 -33.74032 -32.54263 -31.56213 -30.33069 -30.11523 -28.27203 -27.79151 -26.14462 -24.59143 -23.88889 -23.09235 -22.28352 -21.88845 -19.79615 -19.60738 -18.58398 -17.29978 -17.09239 -16.58811 -15.94723 -15.86159 -15.24721 -14.99778 -14.79026 -14.55242 -14.15301 -13.99179 -13.83870 -13.53178 -13.29213 -13.22245 -13.17362 -12.83892 -12.64605 -12.52790 -12.41879 -12.10656 -11.89994 -11.53763 -11.38873 -11.17366 -10.93880 -10.82070 -10.78587 -10.47859 -10.43478 -10.29149 -10.05991 -9.95521 -9.71799 -9.68028 -8.87967 -8.61754 -8.56018 -8.27110 -6.86270 -5.84767 -3.33601 0.06541 0.52268 1.73863 2.34051 3.09091 3.26566 3.32489 3.39533 3.40373 3.93556 3.95090 4.31276 4.36414 4.45001 4.49945 4.57130 4.82575 4.95204 4.99676 5.12778 5.14983 5.22189 5.24656 5.27290 5.28077 5.45126 5.54077 5.58221 5.65690 5.67133 5.71911 5.80230 5.83391 5.88001 5.92766 6.09277 6.13511 6.22139 6.30140 6.32813 6.47234 6.56853 6.64262 6.74033 6.82339 7.30392 7.61607 7.67323 7.72128 7.72654 8.23084 8.31110 9.12436 9.72645 10.22120 11.21160 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.002797 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.623064 B =10008.141162 C =11674.347016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.163 3.837 3 C -0.181 4.181 4 C -0.044 4.044 5 C -0.121 4.121 6 C -0.030 4.030 7 C -0.125 4.125 8 C 0.571 3.429 9 O -0.549 6.549 10 N -0.603 5.603 11 C 0.107 3.893 12 C -0.152 4.152 13 C 0.170 3.830 14 H 0.082 0.918 15 N -0.586 5.586 16 C 0.158 3.842 17 C -0.262 4.262 18 H 0.070 0.930 19 C 0.007 3.993 20 N -0.906 5.906 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.063 3.937 26 C -0.112 4.112 27 C -0.100 4.100 28 C 0.149 3.851 29 N -0.478 5.478 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.019 0.981 41 H -0.006 1.006 42 H 0.066 0.934 43 H 0.254 0.746 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.177 0.823 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.978 17.576 -4.058 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.009 3.991 3 C -0.201 4.201 4 C -0.070 4.070 5 C -0.123 4.123 6 C -0.050 4.050 7 C -0.128 4.128 8 C 0.361 3.639 9 O -0.429 6.429 10 N -0.336 5.336 11 C -0.016 4.016 12 C -0.192 4.192 13 C 0.059 3.941 14 H 0.100 0.900 15 N -0.307 5.307 16 C 0.014 3.986 17 C -0.391 4.391 18 H 0.088 0.912 19 C -0.192 4.192 20 N -0.550 5.550 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.204 1.204 25 C -0.061 4.061 26 C -0.131 4.131 27 C -0.119 4.119 28 C 0.027 3.973 29 N -0.188 5.188 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.037 0.963 41 H 0.012 0.988 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.193 0.807 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.016 17.122 -3.831 21.266 hybrid contribution 0.474 -0.134 -0.232 0.545 sum -11.542 16.988 -4.063 20.936 Atomic orbital electron populations 1.20798 0.88587 1.03715 1.03375 1.21565 0.97225 0.88263 0.91998 1.21687 0.94959 0.99259 1.04161 1.21537 0.94491 0.97230 0.93698 1.18768 0.94326 0.94311 1.04898 1.21380 0.92246 0.97867 0.93511 1.19905 0.93182 0.94125 1.05583 1.17853 0.86941 0.82267 0.76862 1.90741 1.66887 1.34091 1.51191 1.48321 1.08803 1.05881 1.70568 1.22287 0.80126 0.98294 1.00844 1.23391 1.00931 0.92517 1.02370 1.21381 0.89781 0.86553 0.96337 0.90004 1.43871 1.79860 1.01441 1.05492 1.20869 0.98143 0.96137 0.83496 1.19219 1.42873 0.82742 0.94265 0.91180 1.25118 0.99213 0.98497 0.96393 1.70040 1.49941 1.28273 1.06762 0.86213 0.77888 0.83918 0.78225 1.21339 1.21588 1.20398 1.23321 0.98243 0.82850 1.01710 1.22746 0.94438 1.00756 0.95129 1.20787 0.93913 0.96472 1.00680 1.19049 0.88993 0.93071 0.96143 1.67925 1.08428 1.28679 1.13733 0.90035 0.90501 0.90171 0.84469 0.84100 0.83971 0.90866 0.91583 0.90575 0.90220 0.96290 0.98770 0.91551 0.93532 0.90799 0.89477 0.80687 0.84072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.14 36.00 0.37 -0.34 16 2 C 0.16 1.65 6.78 -82.50 -0.56 1.09 16 3 C -0.18 -1.54 9.64 -39.78 -0.38 -1.92 16 4 C -0.04 -0.42 9.89 -39.17 -0.39 -0.80 16 5 C -0.12 -1.51 5.74 -106.82 -0.61 -2.12 16 6 C -0.03 -0.40 9.34 -38.74 -0.36 -0.76 16 7 C -0.12 -1.83 5.87 -104.99 -0.62 -2.44 16 8 C 0.57 9.47 7.80 -12.36 -0.10 9.37 16 9 O -0.55 -10.35 16.56 5.31 0.09 -10.26 16 10 N -0.60 -9.61 3.33 -178.74 -0.59 -10.21 16 11 C 0.11 1.62 6.94 -2.53 -0.02 1.60 16 12 C -0.15 -2.55 6.66 -24.58 -0.16 -2.71 16 13 C 0.17 3.11 3.45 -66.10 -0.23 2.88 16 14 H 0.08 1.47 7.94 -51.93 -0.41 1.06 16 15 N -0.59 -13.35 2.93 -171.39 -0.50 -13.85 16 16 C 0.16 3.62 7.95 59.85 0.48 4.10 16 17 C -0.26 -6.64 9.60 -15.06 -0.14 -6.78 16 18 H 0.07 1.72 7.82 -52.48 -0.41 1.31 16 19 C 0.01 0.17 5.19 -17.43 -0.09 0.08 16 20 N -0.91 -25.07 10.53 55.49 0.58 -24.49 16 21 Si 0.91 20.80 29.56 -169.99 -5.02 15.77 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.06 0.99 4.45 -3.06 -0.01 0.98 16 26 C -0.11 -1.54 8.50 -39.59 -0.34 -1.88 16 27 C -0.10 -1.34 9.95 -39.53 -0.39 -1.73 16 28 C 0.15 2.03 6.61 -84.77 -0.56 1.47 16 29 N -0.48 -6.24 10.23 -7.16 -0.07 -6.32 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 34 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.14 1.71 7.64 -52.49 -0.40 1.31 16 36 H 0.07 1.12 7.98 -51.93 -0.41 0.71 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.41 7.18 -51.93 -0.37 1.04 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.02 0.47 7.63 -51.93 -0.40 0.07 16 41 H -0.01 -0.12 6.05 -51.93 -0.31 -0.43 16 42 H 0.07 1.68 6.63 -51.93 -0.34 1.34 16 43 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.07 1.06 6.73 -51.93 -0.35 0.72 16 45 H 0.09 1.45 4.47 -51.93 -0.23 1.21 16 46 H 0.18 2.41 2.66 -61.59 -0.16 2.25 16 47 H 0.14 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -31.00 374.80 -10.32 -41.32 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.32 Total: 2.30 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -4.12 Total: 0.08 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.59 Total: -54.86 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.00 -10.32 -41.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972590941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.619 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds