Wall clock time and date at job start Tue Mar 31 2020 22:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39311 * 119.11521 * 2 1 4 4 C 1.36580 * 119.90485 * 180.02562 * 3 2 1 5 5 C 1.40898 * 118.16124 * 359.95984 * 4 3 2 6 6 C 1.40176 * 121.22716 * 180.02562 * 5 4 3 7 7 C 1.38547 * 119.40100 * 179.97438 * 6 5 4 8 8 C 1.47774 * 119.80465 * 179.97438 * 7 6 5 9 9 O 1.21566 * 119.99514 * 7.56265 * 8 7 6 10 10 N 1.34774 * 120.00068 * 187.55566 * 8 7 6 11 11 C 1.47427 * 125.64517 * 174.16988 * 10 8 7 12 12 C 1.54908 * 104.82975 * 155.83226 * 11 10 8 13 13 C 1.55159 * 101.58250 * 37.00884 * 12 11 10 14 14 H 1.09001 * 110.71909 * 83.03760 * 13 12 11 15 15 N 1.46498 * 110.72033 * 206.13440 * 13 12 11 16 16 C 1.46498 * 120.00086 * 60.00232 * 15 13 12 17 17 C 1.36929 * 120.00171 * 240.00041 * 15 13 12 18 18 H 1.08006 * 120.00312 * 334.69262 * 17 15 13 19 19 C 1.38815 * 120.00167 * 154.41264 * 17 15 13 20 20 N 1.31614 * 120.00076 * 354.50489 * 19 17 15 21 21 Si 1.86799 * 119.99951 * 174.50850 * 19 17 15 22 22 H 1.48494 * 109.47431 * 90.00191 * 21 19 17 23 23 H 1.48507 * 109.47019 * 210.00033 * 21 19 17 24 24 H 1.48498 * 109.47362 * 329.99504 * 21 19 17 25 25 C 1.47023 * 125.64812 * 354.12695 * 10 8 7 26 26 C 1.40623 * 120.39536 * 0.26917 * 7 6 5 27 27 C 1.35709 * 120.92063 * 359.46247 * 26 7 6 28 28 C 1.40758 * 120.10520 * 0.51403 * 27 26 7 29 29 N 1.31125 * 119.11316 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47096 * 269.97247 * 1 2 3 31 31 H 1.08998 * 109.47173 * 29.97681 * 1 2 3 32 32 H 1.09001 * 109.47347 * 149.97685 * 1 2 3 33 33 H 1.07998 * 120.05204 * 359.97438 * 3 2 1 34 34 H 1.08004 * 120.92080 * 180.02562 * 4 3 2 35 35 H 1.07997 * 120.29900 * 359.94892 * 6 5 4 36 36 H 1.09004 * 110.36696 * 36.99133 * 11 10 8 37 37 H 1.08999 * 110.45790 * 274.71494 * 11 10 8 38 38 H 1.09006 * 111.00467 * 278.93699 * 12 11 10 39 39 H 1.08998 * 111.03752 * 155.09914 * 12 11 10 40 40 H 1.08998 * 109.47225 * 274.57220 * 16 15 13 41 41 H 1.09001 * 109.47384 * 34.57045 * 16 15 13 42 42 H 1.08999 * 109.47859 * 154.57215 * 16 15 13 43 43 H 0.96995 * 120.00397 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.88242 * 61.68456 * 25 10 8 45 45 H 1.08993 * 109.88043 * 300.51225 * 25 10 8 46 46 H 1.08003 * 119.54348 * 179.72610 * 26 7 6 47 47 H 1.07993 * 119.94892 * 180.30282 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.2171 0.0000 4 6 3.5505 1.2359 -0.0005 5 6 4.2325 0.0030 -0.0002 6 6 5.6332 -0.0527 -0.0002 7 6 6.2649 -1.2858 0.0007 8 6 7.7410 -1.3549 0.0002 9 8 8.3969 -0.3406 0.1375 10 7 8.3600 -2.5423 -0.1525 11 6 9.8139 -2.7414 -0.2930 12 6 10.0627 -4.1951 0.1810 13 6 8.8022 -4.9195 -0.3612 14 1 8.9343 -5.1918 -1.4083 15 7 8.4975 -6.1036 0.4459 16 6 8.2124 -5.9619 1.8758 17 6 8.4793 -7.3428 -0.1363 18 1 8.2797 -7.4400 -1.1933 19 6 8.7229 -8.4737 0.6308 20 7 9.0776 -8.3495 1.8921 21 14 8.5475 -10.1720 -0.1272 22 1 9.8477 -10.5909 -0.7096 23 1 8.1392 -11.1419 0.9207 24 1 7.5162 -10.1335 -1.1949 25 6 7.6971 -3.8535 -0.2055 26 6 5.5097 -2.4720 -0.0041 27 6 4.1531 -2.4351 0.0012 28 6 3.4805 -1.1987 0.0008 29 7 2.1450 -1.1456 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6313 2.1444 -0.0004 34 1 4.0927 2.1700 -0.0001 35 1 6.2146 0.8574 -0.0012 36 1 10.3560 -2.0382 0.3393 37 1 10.1156 -2.6249 -1.3339 38 1 10.1068 -4.2493 1.2688 39 1 10.9697 -4.6024 -0.2655 40 1 9.1483 -5.9589 2.4344 41 1 7.6826 -5.0252 2.0496 42 1 7.5940 -6.7959 2.2075 43 1 9.2475 -9.1397 2.4283 44 1 7.0212 -3.8929 -1.0596 45 1 7.1428 -4.0262 0.7169 46 1 6.0164 -3.4258 -0.0079 47 1 3.5888 -3.3559 0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972590941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:29 Heat of formation + Delta-G solvation = 58.124677 kcal Electronic energy + Delta-G solvation = -28865.727331 eV Core-core repulsion = 25014.480035 eV Total energy + Delta-G solvation = -3851.247296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.12880 -41.15825 -39.07222 -38.01168 -36.54954 -34.59519 -33.63722 -33.11239 -31.50993 -31.19881 -29.60988 -28.76756 -28.05856 -25.89823 -24.77400 -24.54356 -23.20924 -23.08092 -21.14596 -20.94387 -19.65276 -18.91039 -18.27017 -17.64751 -17.41086 -16.96694 -16.50414 -16.26027 -15.80330 -15.64844 -15.53141 -15.12759 -14.93244 -14.81917 -14.72914 -14.46615 -14.23333 -13.95426 -13.89236 -13.62754 -13.28127 -13.13671 -13.02799 -12.92873 -12.80786 -12.59001 -12.48497 -12.30456 -12.28065 -12.06322 -11.86682 -11.77014 -11.62394 -11.46620 -11.09060 -10.58557 -10.51762 -9.81967 -9.73588 -9.30180 -8.75192 -7.83150 -5.32731 -0.84567 -0.37105 0.82716 1.33950 1.50727 1.51952 1.60261 1.84491 2.17999 2.52204 3.01395 3.12885 3.26662 3.33176 3.52259 3.61721 3.66263 3.74675 3.86311 3.92933 3.97902 4.01525 4.22412 4.27471 4.32085 4.38477 4.41105 4.55833 4.65982 4.76174 4.79319 4.80668 4.84152 4.91638 4.93057 4.94335 5.00209 5.08936 5.17984 5.18876 5.23217 5.27114 5.36131 5.38418 5.51560 5.66456 5.74500 5.75846 6.33082 6.40005 6.89660 6.95684 7.16474 7.84865 8.30422 9.21748 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013605 B = 0.002797 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.623064 B =10008.141162 C =11674.347016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.159 3.841 3 C -0.172 4.172 4 C -0.045 4.045 5 C -0.136 4.136 6 C -0.020 4.020 7 C -0.149 4.149 8 C 0.572 3.428 9 O -0.577 6.577 10 N -0.605 5.605 11 C 0.113 3.887 12 C -0.142 4.142 13 C 0.163 3.837 14 H 0.090 0.910 15 N -0.599 5.599 16 C 0.176 3.824 17 C -0.261 4.261 18 H 0.079 0.921 19 C -0.049 4.049 20 N -0.939 5.939 21 Si 0.969 3.031 22 H -0.287 1.287 23 H -0.298 1.298 24 H -0.267 1.267 25 C 0.079 3.921 26 C -0.113 4.113 27 C -0.110 4.110 28 C 0.132 3.868 29 N -0.514 5.514 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.180 0.820 34 H 0.173 0.827 35 H 0.152 0.848 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.085 0.915 40 H -0.007 1.007 41 H 0.020 0.980 42 H 0.037 0.963 43 H 0.247 0.753 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.172 0.828 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.891 19.972 -5.482 24.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.007 3.993 3 C -0.191 4.191 4 C -0.070 4.070 5 C -0.138 4.138 6 C -0.040 4.040 7 C -0.152 4.152 8 C 0.363 3.637 9 O -0.459 6.459 10 N -0.337 5.337 11 C -0.009 4.009 12 C -0.183 4.183 13 C 0.054 3.946 14 H 0.108 0.892 15 N -0.321 5.321 16 C 0.031 3.969 17 C -0.391 4.391 18 H 0.097 0.903 19 C -0.244 4.244 20 N -0.585 5.585 21 Si 0.797 3.203 22 H -0.214 1.214 23 H -0.225 1.225 24 H -0.192 1.192 25 C -0.045 4.045 26 C -0.132 4.132 27 C -0.128 4.128 28 C 0.011 3.989 29 N -0.224 5.224 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.197 0.803 34 H 0.190 0.810 35 H 0.169 0.831 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.011 0.989 41 H 0.038 0.962 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.110 0.890 45 H 0.097 0.903 46 H 0.188 0.812 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.936 19.541 -5.290 24.578 hybrid contribution 0.896 -0.705 0.189 1.155 sum -13.041 18.836 -5.101 23.471 Atomic orbital electron populations 1.20933 0.86141 1.04869 1.04411 1.22327 0.98984 0.88250 0.89786 1.22148 0.94765 1.00221 1.01951 1.21948 0.95210 0.97188 0.92673 1.18970 0.94026 0.95365 1.05488 1.21531 0.92774 0.97611 0.92071 1.19811 0.92012 0.95103 1.08260 1.18129 0.87687 0.81817 0.76079 1.90715 1.67646 1.34817 1.52696 1.48350 1.09058 1.05799 1.70485 1.22279 0.79874 0.96763 1.01984 1.23224 1.00444 0.93632 1.00968 1.21571 0.91230 0.85727 0.96049 0.89201 1.43993 1.80370 1.02190 1.05509 1.20537 0.96498 0.96108 0.83760 1.19592 1.41132 0.83801 0.94596 0.90341 1.25832 0.99972 1.01788 0.96854 1.70212 1.51866 1.28475 1.07973 0.85249 0.77814 0.79882 0.77333 1.21384 1.22511 1.19175 1.23109 0.97229 0.82011 1.02167 1.22569 0.94521 1.00260 0.95838 1.20869 0.93855 0.97036 1.01075 1.19231 0.89726 0.93477 0.96454 1.67967 1.08179 1.30513 1.15750 0.88852 0.87470 0.90929 0.80313 0.80999 0.83064 0.90919 0.89481 0.92667 0.89624 0.98891 0.96222 0.94383 0.94320 0.88983 0.90285 0.81151 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.14 71.24 0.72 -0.34 16 2 C 0.16 2.80 6.78 42.92 0.29 3.09 16 3 C -0.17 -2.24 9.64 22.14 0.21 -2.03 16 4 C -0.04 -0.71 9.89 22.53 0.22 -0.49 16 5 C -0.14 -3.20 5.74 -21.29 -0.12 -3.32 16 6 C -0.02 -0.51 9.34 22.81 0.21 -0.30 16 7 C -0.15 -4.31 5.87 -20.10 -0.12 -4.43 16 8 C 0.57 18.73 7.80 86.77 0.68 19.41 16 9 O -0.58 -21.50 16.56 -3.92 -0.06 -21.56 16 10 N -0.61 -18.89 3.33 -837.69 -2.79 -21.68 16 11 C 0.11 3.32 6.94 86.85 0.60 3.92 16 12 C -0.14 -4.75 6.66 31.99 0.21 -4.54 16 13 C 0.16 5.88 3.45 46.18 0.16 6.04 16 14 H 0.09 3.11 7.94 -2.39 -0.02 3.09 16 15 N -0.60 -27.53 2.93 -696.16 -2.04 -29.57 16 16 C 0.18 8.31 7.95 127.77 1.02 9.33 16 17 C -0.26 -13.27 9.60 84.04 0.81 -12.47 16 18 H 0.08 3.79 7.82 -2.91 -0.02 3.77 16 19 C -0.05 -2.63 5.19 84.86 0.44 -2.19 16 20 N -0.94 -53.55 10.53 21.65 0.23 -53.32 16 21 Si 0.97 43.21 29.56 68.60 2.03 45.23 16 22 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 C 0.08 2.44 4.45 86.73 0.39 2.83 16 26 C -0.11 -3.12 8.50 22.27 0.19 -2.93 16 27 C -0.11 -2.97 9.95 22.30 0.22 -2.75 16 28 C 0.13 3.54 6.61 40.35 0.27 3.80 16 29 N -0.51 -12.88 10.23 -176.58 -1.81 -14.69 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.11 0.44 8.07 -2.39 -0.02 0.42 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 34 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.15 3.45 7.64 -2.91 -0.02 3.42 16 36 H 0.07 2.17 7.98 -2.39 -0.02 2.15 16 37 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.05 2.08 7.18 -2.38 -0.02 2.06 16 39 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 40 H -0.01 -0.38 7.63 -2.39 -0.02 -0.40 16 41 H 0.02 0.81 6.05 -2.39 -0.01 0.80 16 42 H 0.04 1.99 6.63 -2.39 -0.02 1.97 16 43 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 44 H 0.09 2.56 6.73 -2.39 -0.02 2.55 16 45 H 0.08 2.62 4.47 -2.39 -0.01 2.61 16 46 H 0.17 4.71 2.66 -11.47 -0.03 4.68 16 47 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -68.68 374.80 2.93 -65.74 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.98 Total: 17.22 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 6.40 Total: 12.63 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -6.41 Total: -119.26 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.06 Total: -21.56 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -68.68 2.93 -65.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972590941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.867 kcal (2) G-P(sol) polarization free energy of solvation -68.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds