Wall clock time and date at job start Tue Mar 31 2020 23:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 110.91769 * 2 1 4 4 C 1.54917 * 111.00423 * 236.09738 * 2 1 3 5 5 N 1.47425 * 104.83267 * 204.91774 * 4 2 1 6 6 C 1.36930 * 125.65096 * 204.16400 * 5 4 2 7 7 H 1.08002 * 119.99707 * 354.83829 * 6 5 4 8 8 C 1.38813 * 120.00238 * 174.83521 * 6 5 4 9 9 N 1.31616 * 119.99825 * 7.06715 * 8 6 5 10 10 Si 1.86795 * 119.99813 * 187.06188 * 8 6 5 11 11 H 1.48505 * 109.47127 * 94.99212 * 10 8 6 12 12 H 1.48503 * 109.47260 * 214.98769 * 10 8 6 13 13 H 1.48500 * 109.47754 * 334.99077 * 10 8 6 14 14 C 1.47025 * 108.70321 * 24.12813 * 5 4 2 15 15 C 1.54324 * 107.27057 * 358.94117 * 14 5 4 16 16 H 1.08997 * 110.72283 * 219.26287 * 15 14 5 17 17 N 1.46506 * 110.72053 * 96.16815 * 15 14 5 18 18 C 1.34780 * 119.99504 * 86.45659 * 17 15 14 19 19 O 1.21597 * 120.00274 * 359.97438 * 18 17 15 20 20 C 1.47437 * 119.99397 * 179.97438 * 18 17 15 21 21 C 1.38740 * 120.33598 * 0.02562 * 20 18 17 22 22 C 1.38874 * 120.72502 * 179.97438 * 21 20 18 23 23 C 1.36343 * 121.05812 * 359.96958 * 22 21 20 24 24 C 1.40441 * 120.08611 * 0.02562 * 23 22 21 25 25 C 1.40809 * 121.26376 * 179.97438 * 24 23 22 26 26 C 1.36630 * 118.15618 * 180.02562 * 25 24 23 27 27 C 1.39229 * 119.90611 * 359.97438 * 26 25 24 28 28 N 1.31227 * 121.69807 * 359.97438 * 27 26 25 29 29 C 1.33349 * 121.35275 * 0.02562 * 28 27 26 30 30 H 1.08994 * 109.47492 * 296.09890 * 1 2 3 31 31 H 1.09009 * 109.47304 * 56.09687 * 1 2 3 32 32 H 1.09002 * 109.47605 * 176.09629 * 1 2 3 33 33 H 1.09004 * 109.47271 * 183.90189 * 3 2 1 34 34 H 1.09000 * 109.47055 * 303.89996 * 3 2 1 35 35 H 1.09004 * 109.46769 * 63.90116 * 3 2 1 36 36 H 1.08995 * 110.36139 * 86.08085 * 4 2 1 37 37 H 1.09004 * 110.36597 * 323.75372 * 4 2 1 38 38 H 0.97002 * 119.99427 * 179.97438 * 9 8 6 39 39 H 1.08994 * 109.88769 * 239.52489 * 14 5 4 40 40 H 1.08994 * 109.88349 * 118.35472 * 14 5 4 41 41 H 0.96995 * 120.00128 * 266.45398 * 17 15 14 42 42 H 1.08000 * 119.63658 * 359.97012 * 21 20 18 43 43 H 1.07999 * 119.46627 * 179.69001 * 22 21 20 44 44 H 1.08002 * 119.95662 * 179.97438 * 23 22 21 45 45 H 1.08007 * 120.92152 * 0.06254 * 25 24 23 46 46 H 1.07996 * 120.04300 * 179.97438 * 26 25 24 47 47 H 1.08003 * 119.14871 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0852 -0.8067 -1.2004 5 7 3.4271 -1.2432 -0.7734 6 6 4.4644 -1.5655 -1.6071 7 1 4.3104 -1.5906 -2.6758 8 6 5.7138 -1.8599 -1.0788 9 7 5.8691 -1.9660 0.2239 10 14 7.1746 -2.1057 -2.2167 11 1 7.9221 -0.8289 -2.3454 12 1 8.0699 -3.1488 -1.6547 13 1 6.6935 -2.5346 -3.5545 14 6 3.4674 -1.2742 0.6960 15 6 2.0861 -0.8080 1.2022 16 1 2.1919 -0.1726 2.0815 17 7 1.2267 -1.9575 1.4961 18 6 1.2805 -2.5469 2.7070 19 8 2.0427 -2.1249 3.5553 20 6 0.4152 -3.7033 3.0030 21 6 -0.4565 -4.1909 2.0401 22 6 -1.2748 -5.2800 2.3100 23 6 -1.2441 -5.8990 3.5244 24 6 -0.3764 -5.4380 4.5278 25 6 -0.3248 -6.0583 5.7909 26 6 0.5424 -5.5572 6.7203 27 6 1.3432 -4.4632 6.4037 28 7 1.2921 -3.8894 5.2247 29 6 0.4673 -4.3299 4.2739 30 1 -0.3634 0.4521 0.9228 31 1 -0.3634 0.5733 -0.8530 32 1 -0.3634 -1.0253 -0.0700 33 1 3.1636 1.4025 -0.0699 34 1 1.6705 1.9731 -0.8530 35 1 1.7836 1.9299 0.9229 36 1 2.1559 -0.1720 -2.0836 37 1 1.4518 -1.6705 -1.4025 38 1 6.7421 -2.1721 0.5930 39 1 4.2425 -0.5999 1.0600 40 1 3.6649 -2.2894 1.0400 41 1 0.6190 -2.2943 0.8194 42 1 -0.4993 -3.7181 1.0700 43 1 -1.9495 -5.6396 1.5471 44 1 -1.8886 -6.7444 3.7152 45 1 -0.9529 -6.9069 6.0186 46 1 0.6066 -6.0092 7.6990 47 1 2.0247 -4.0773 7.1475 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974783766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:27 Heat of formation + Delta-G solvation = 58.458238 kcal Electronic energy + Delta-G solvation = -29694.530753 eV Core-core repulsion = 25843.297921 eV Total energy + Delta-G solvation = -3851.232832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.00746 -39.49955 -37.78361 -36.91574 -33.79948 -33.47487 -32.91089 -30.69317 -30.61651 -30.29553 -27.92395 -26.74737 -25.58393 -24.72202 -23.82323 -23.50653 -22.66286 -20.45595 -19.79823 -18.78225 -18.32551 -17.57685 -16.88073 -16.62867 -15.99150 -15.56670 -14.86409 -14.83143 -14.52620 -14.20022 -14.11312 -13.88369 -13.74622 -13.67518 -13.19578 -13.15335 -13.06779 -12.43192 -12.23203 -12.03993 -11.92551 -11.80894 -11.60712 -11.50492 -11.29913 -11.01760 -10.95439 -10.74380 -10.57340 -10.32410 -10.16888 -9.92616 -9.82218 -9.70131 -9.59559 -8.98856 -8.93038 -8.54049 -8.44276 -8.22781 -6.76017 -5.63776 -2.97766 0.07958 0.70188 1.69695 2.69452 3.44092 3.48651 3.50022 3.51769 3.59176 4.17942 4.22702 4.43660 4.55189 4.58340 4.68754 4.74361 4.90015 4.98741 5.00701 5.14236 5.31691 5.33556 5.35802 5.54142 5.59332 5.70346 5.74792 5.78718 5.86150 5.89785 5.96138 6.04989 6.07852 6.16697 6.21319 6.25313 6.29849 6.34783 6.46556 6.64316 6.65883 6.66314 6.73212 6.83918 7.03807 7.64183 7.73789 7.90677 7.97708 8.09251 8.32662 8.80765 9.27910 9.89017 10.55245 11.46878 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012296 B = 0.003400 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.537613 B = 8232.826236 C = 9133.009416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.125 4.125 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.232 4.232 7 H 0.077 0.923 8 C -0.005 4.005 9 N -0.914 5.914 10 Si 0.908 3.092 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.175 3.825 15 C 0.128 3.872 16 H 0.087 0.913 17 N -0.710 5.710 18 C 0.548 3.452 19 O -0.496 6.496 20 C -0.095 4.095 21 C -0.068 4.068 22 C -0.122 4.122 23 C -0.079 4.079 24 C -0.111 4.111 25 C -0.062 4.062 26 C -0.175 4.175 27 C 0.128 3.872 28 N -0.431 5.431 29 C 0.161 3.839 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.013 0.987 38 H 0.252 0.748 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.390 0.610 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.787 -5.913 8.501 21.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.360 4.360 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.561 5.561 10 Si 0.738 3.262 11 H -0.216 1.216 12 H -0.219 1.219 13 H -0.207 1.207 14 C 0.050 3.950 15 C 0.023 3.977 16 H 0.105 0.895 17 N -0.363 5.363 18 C 0.333 3.667 19 O -0.370 6.370 20 C -0.099 4.099 21 C -0.089 4.089 22 C -0.140 4.140 23 C -0.098 4.098 24 C -0.113 4.113 25 C -0.088 4.088 26 C -0.195 4.195 27 C -0.044 4.044 28 N -0.137 5.137 29 C 0.038 3.962 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.031 0.969 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.226 0.774 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.156 0.844 46 H 0.154 0.846 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.454 -4.906 8.847 20.174 hybrid contribution 0.034 -1.276 -0.731 1.470 sum -17.420 -6.182 8.116 20.188 Atomic orbital electron populations 1.21676 0.94847 1.00913 1.01392 1.22007 0.94343 0.96095 0.96662 1.21593 1.02555 0.93686 1.00470 1.21623 0.87842 0.94412 0.94327 1.44442 1.07811 1.78759 1.01871 1.19008 0.87478 1.40478 0.89053 0.90527 1.24826 0.97551 1.01920 0.95891 1.69993 1.22529 1.54120 1.09447 0.86169 0.83032 0.77371 0.79605 1.21647 1.21870 1.20738 1.21525 0.89806 1.00476 0.83232 1.22438 0.92274 0.86075 0.96887 0.89502 1.45963 1.43010 1.33345 1.14023 1.17813 0.83195 0.82948 0.82697 1.90853 1.37422 1.62689 1.46050 1.20109 0.98806 0.97927 0.93036 1.21471 0.93554 0.95398 0.98440 1.20826 0.99673 0.96118 0.97407 1.21104 0.96995 0.99036 0.92674 1.18835 0.99089 0.97633 0.95758 1.21424 0.97246 0.98358 0.91808 1.21957 0.98015 0.98661 1.00909 1.23205 0.95802 0.91598 0.93825 1.68363 1.17271 1.27831 1.00252 1.18652 0.92434 0.92111 0.93053 0.92792 0.92630 0.93247 0.91159 0.92922 0.93342 0.94090 0.96910 0.93702 0.92736 0.93546 0.77386 0.84834 0.84877 0.85032 0.84426 0.84574 0.82327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 8.22 37.15 0.31 -1.40 16 2 C -0.09 -1.52 0.83 -152.36 -0.13 -1.64 16 3 C -0.13 -2.05 8.57 37.16 0.32 -1.73 16 4 C 0.14 2.89 6.14 -2.52 -0.02 2.87 16 5 N -0.60 -15.31 3.38 -170.07 -0.57 -15.88 16 6 C -0.23 -6.51 10.26 -15.06 -0.15 -6.67 16 7 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 8 C 0.00 -0.14 5.48 -17.43 -0.10 -0.24 16 9 N -0.91 -27.94 10.36 55.49 0.57 -27.36 16 10 Si 0.91 22.58 29.56 -169.99 -5.02 17.55 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.18 4.44 4.80 -3.06 -0.01 4.43 16 15 C 0.13 2.54 2.51 -66.09 -0.17 2.38 16 16 H 0.09 1.81 7.60 -51.93 -0.39 1.41 16 17 N -0.71 -12.60 4.52 -53.10 -0.24 -12.84 16 18 C 0.55 10.64 7.76 -12.51 -0.10 10.54 16 19 O -0.50 -11.59 14.91 5.28 0.08 -11.51 16 20 C -0.09 -1.53 5.91 -104.61 -0.62 -2.15 16 21 C -0.07 -0.82 9.52 -39.16 -0.37 -1.19 16 22 C -0.12 -1.17 9.93 -40.03 -0.40 -1.56 16 23 C -0.08 -0.75 9.75 -39.44 -0.38 -1.14 16 24 C -0.11 -1.35 5.74 -106.82 -0.61 -1.97 16 25 C -0.06 -0.59 9.90 -39.19 -0.39 -0.98 16 26 C -0.18 -1.67 10.03 -39.79 -0.40 -2.07 16 27 C 0.13 1.63 11.15 -17.44 -0.19 1.44 16 28 N -0.43 -7.44 8.44 -10.76 -0.09 -7.53 16 29 C 0.16 2.58 6.61 -84.58 -0.56 2.02 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.05 0.59 6.38 -51.93 -0.33 0.26 16 33 H 0.07 1.36 7.91 -51.93 -0.41 0.95 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 37 H 0.01 0.26 7.98 -51.93 -0.41 -0.16 16 38 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.05 1.56 7.30 -51.93 -0.38 1.18 16 40 H 0.05 1.37 7.51 -51.93 -0.39 0.98 16 41 H 0.39 5.85 4.92 -40.82 -0.20 5.65 16 42 H 0.13 1.34 6.37 -52.49 -0.33 1.01 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 45 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 46 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -36.46 378.62 -10.17 -46.63 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.62 Total: 4.29 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -3.97 Total: 0.95 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -0.33 Total: -63.61 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.51 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.46 -10.17 -46.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974783766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.089 kcal (2) G-P(sol) polarization free energy of solvation -36.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds