Wall clock time and date at job start Tue Mar 31 2020 23:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 110.91769 * 2 1 4 4 C 1.54917 * 111.00423 * 236.09738 * 2 1 3 5 5 N 1.47425 * 104.83267 * 204.91774 * 4 2 1 6 6 C 1.36930 * 125.65096 * 204.16400 * 5 4 2 7 7 H 1.08002 * 119.99707 * 354.83829 * 6 5 4 8 8 C 1.38813 * 120.00238 * 174.83521 * 6 5 4 9 9 N 1.31616 * 119.99825 * 7.06715 * 8 6 5 10 10 Si 1.86795 * 119.99813 * 187.06188 * 8 6 5 11 11 H 1.48505 * 109.47127 * 94.99212 * 10 8 6 12 12 H 1.48503 * 109.47260 * 214.98769 * 10 8 6 13 13 H 1.48500 * 109.47754 * 334.99077 * 10 8 6 14 14 C 1.47025 * 108.70321 * 24.12813 * 5 4 2 15 15 C 1.54324 * 107.27057 * 358.94117 * 14 5 4 16 16 H 1.08997 * 110.72283 * 219.26287 * 15 14 5 17 17 N 1.46506 * 110.72053 * 96.16815 * 15 14 5 18 18 C 1.34780 * 119.99504 * 86.45659 * 17 15 14 19 19 O 1.21597 * 120.00274 * 359.97438 * 18 17 15 20 20 C 1.47437 * 119.99397 * 179.97438 * 18 17 15 21 21 C 1.38740 * 120.33598 * 0.02562 * 20 18 17 22 22 C 1.38874 * 120.72502 * 179.97438 * 21 20 18 23 23 C 1.36343 * 121.05812 * 359.96958 * 22 21 20 24 24 C 1.40441 * 120.08611 * 0.02562 * 23 22 21 25 25 C 1.40809 * 121.26376 * 179.97438 * 24 23 22 26 26 C 1.36630 * 118.15618 * 180.02562 * 25 24 23 27 27 C 1.39229 * 119.90611 * 359.97438 * 26 25 24 28 28 N 1.31227 * 121.69807 * 359.97438 * 27 26 25 29 29 C 1.33349 * 121.35275 * 0.02562 * 28 27 26 30 30 H 1.08994 * 109.47492 * 296.09890 * 1 2 3 31 31 H 1.09009 * 109.47304 * 56.09687 * 1 2 3 32 32 H 1.09002 * 109.47605 * 176.09629 * 1 2 3 33 33 H 1.09004 * 109.47271 * 183.90189 * 3 2 1 34 34 H 1.09000 * 109.47055 * 303.89996 * 3 2 1 35 35 H 1.09004 * 109.46769 * 63.90116 * 3 2 1 36 36 H 1.08995 * 110.36139 * 86.08085 * 4 2 1 37 37 H 1.09004 * 110.36597 * 323.75372 * 4 2 1 38 38 H 0.97002 * 119.99427 * 179.97438 * 9 8 6 39 39 H 1.08994 * 109.88769 * 239.52489 * 14 5 4 40 40 H 1.08994 * 109.88349 * 118.35472 * 14 5 4 41 41 H 0.96995 * 120.00128 * 266.45398 * 17 15 14 42 42 H 1.08000 * 119.63658 * 359.97012 * 21 20 18 43 43 H 1.07999 * 119.46627 * 179.69001 * 22 21 20 44 44 H 1.08002 * 119.95662 * 179.97438 * 23 22 21 45 45 H 1.08007 * 120.92152 * 0.06254 * 25 24 23 46 46 H 1.07996 * 120.04300 * 179.97438 * 26 25 24 47 47 H 1.08003 * 119.14871 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0852 -0.8067 -1.2004 5 7 3.4271 -1.2432 -0.7734 6 6 4.4644 -1.5655 -1.6071 7 1 4.3104 -1.5906 -2.6758 8 6 5.7138 -1.8599 -1.0788 9 7 5.8691 -1.9660 0.2239 10 14 7.1746 -2.1057 -2.2167 11 1 7.9221 -0.8289 -2.3454 12 1 8.0699 -3.1488 -1.6547 13 1 6.6935 -2.5346 -3.5545 14 6 3.4674 -1.2742 0.6960 15 6 2.0861 -0.8080 1.2022 16 1 2.1919 -0.1726 2.0815 17 7 1.2267 -1.9575 1.4961 18 6 1.2805 -2.5469 2.7070 19 8 2.0427 -2.1249 3.5553 20 6 0.4152 -3.7033 3.0030 21 6 -0.4565 -4.1909 2.0401 22 6 -1.2748 -5.2800 2.3100 23 6 -1.2441 -5.8990 3.5244 24 6 -0.3764 -5.4380 4.5278 25 6 -0.3248 -6.0583 5.7909 26 6 0.5424 -5.5572 6.7203 27 6 1.3432 -4.4632 6.4037 28 7 1.2921 -3.8894 5.2247 29 6 0.4673 -4.3299 4.2739 30 1 -0.3634 0.4521 0.9228 31 1 -0.3634 0.5733 -0.8530 32 1 -0.3634 -1.0253 -0.0700 33 1 3.1636 1.4025 -0.0699 34 1 1.6705 1.9731 -0.8530 35 1 1.7836 1.9299 0.9229 36 1 2.1559 -0.1720 -2.0836 37 1 1.4518 -1.6705 -1.4025 38 1 6.7421 -2.1721 0.5930 39 1 4.2425 -0.5999 1.0600 40 1 3.6649 -2.2894 1.0400 41 1 0.6190 -2.2943 0.8194 42 1 -0.4993 -3.7181 1.0700 43 1 -1.9495 -5.6396 1.5471 44 1 -1.8886 -6.7444 3.7152 45 1 -0.9529 -6.9069 6.0186 46 1 0.6066 -6.0092 7.6990 47 1 2.0247 -4.0773 7.1475 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974783766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:26 Heat of formation + Delta-G solvation = 33.507530 kcal Electronic energy + Delta-G solvation = -29695.612697 eV Core-core repulsion = 25843.297921 eV Total energy + Delta-G solvation = -3852.314776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.99192 -40.96964 -39.27342 -37.88352 -35.69514 -34.58022 -34.27118 -32.63247 -31.52312 -31.32051 -29.60413 -28.06196 -27.42317 -25.80503 -25.20781 -24.40006 -23.99905 -22.17788 -21.30540 -20.21055 -19.21943 -18.74218 -18.66509 -17.83518 -17.09865 -17.04350 -16.64662 -15.98494 -15.69994 -15.66581 -15.48482 -15.29030 -14.99488 -14.87666 -14.70277 -14.17460 -13.98153 -13.84142 -13.74209 -13.43089 -13.16695 -13.04695 -12.96392 -12.85164 -12.72875 -12.69351 -12.59210 -12.28728 -12.10637 -11.86723 -11.76021 -11.52226 -11.46411 -11.31640 -11.03860 -10.73890 -10.09556 -9.97194 -9.79383 -9.25933 -8.90260 -7.84959 -5.21397 -0.80581 -0.15563 0.78809 1.41843 1.44957 1.53802 1.81356 2.15254 2.30864 2.48263 3.18578 3.32917 3.36334 3.47219 3.59475 3.71601 3.77605 3.88459 3.96470 3.98261 4.06493 4.07323 4.20079 4.38896 4.44682 4.50457 4.52275 4.65218 4.75944 4.84886 4.88097 4.93090 4.94171 4.99219 5.04922 5.10610 5.13643 5.15845 5.22578 5.31347 5.35220 5.36644 5.45929 5.55933 5.58061 5.71709 5.76098 5.86396 6.16316 6.63176 7.06245 7.11328 7.38173 7.77000 8.42387 9.24774 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012296 B = 0.003400 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.537613 B = 8232.826236 C = 9133.009416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.074 4.074 3 C -0.123 4.123 4 C 0.139 3.861 5 N -0.619 5.619 6 C -0.237 4.237 7 H 0.090 0.910 8 C -0.071 4.071 9 N -0.954 5.954 10 Si 0.978 3.022 11 H -0.287 1.287 12 H -0.301 1.301 13 H -0.260 1.260 14 C 0.197 3.803 15 C 0.140 3.860 16 H 0.069 0.931 17 N -0.699 5.699 18 C 0.542 3.458 19 O -0.554 6.554 20 C -0.151 4.151 21 C -0.049 4.049 22 C -0.128 4.128 23 C -0.054 4.054 24 C -0.130 4.130 25 C -0.048 4.048 26 C -0.176 4.176 27 C 0.114 3.886 28 N -0.504 5.504 29 C 0.129 3.871 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.032 0.968 38 H 0.242 0.758 39 H 0.004 0.996 40 H -0.009 1.009 41 H 0.406 0.594 42 H 0.151 0.849 43 H 0.177 0.823 44 H 0.180 0.820 45 H 0.187 0.813 46 H 0.176 0.824 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.386 -8.110 7.014 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.075 4.075 3 C -0.181 4.181 4 C 0.014 3.986 5 N -0.346 5.346 6 C -0.366 4.366 7 H 0.108 0.892 8 C -0.263 4.263 9 N -0.604 5.604 10 Si 0.806 3.194 11 H -0.215 1.215 12 H -0.228 1.228 13 H -0.184 1.184 14 C 0.070 3.930 15 C 0.034 3.966 16 H 0.088 0.912 17 N -0.352 5.352 18 C 0.330 3.670 19 O -0.432 6.432 20 C -0.155 4.155 21 C -0.069 4.069 22 C -0.145 4.145 23 C -0.073 4.073 24 C -0.133 4.133 25 C -0.074 4.074 26 C -0.195 4.195 27 C -0.057 4.057 28 N -0.212 5.212 29 C 0.006 3.994 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.022 0.978 40 H 0.009 0.991 41 H 0.244 0.756 42 H 0.168 0.832 43 H 0.195 0.805 44 H 0.198 0.802 45 H 0.204 0.796 46 H 0.194 0.806 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -22.127 -7.103 7.303 24.359 hybrid contribution 1.397 -0.683 -0.218 1.570 sum -20.730 -7.786 7.085 23.250 Atomic orbital electron populations 1.21655 0.90665 1.02643 1.03131 1.21992 0.97412 0.95233 0.92871 1.21593 0.99971 0.93900 1.02640 1.21908 0.85370 0.95494 0.95812 1.44690 1.09644 1.78688 1.01544 1.19512 0.88309 1.38818 0.90004 0.89203 1.25741 1.00651 1.02725 0.97228 1.70291 1.22251 1.56127 1.11687 0.85065 0.79158 0.76820 0.78363 1.21451 1.22829 1.18448 1.21021 0.92037 0.96107 0.83838 1.22027 0.90214 0.86937 0.97385 0.91242 1.45746 1.42521 1.32689 1.14263 1.18557 0.82788 0.83456 0.82149 1.90800 1.40054 1.64608 1.47782 1.19959 1.01568 0.98665 0.95259 1.21800 0.91840 0.95465 0.97807 1.21296 0.99574 0.94938 0.98740 1.21704 0.95216 0.98974 0.91393 1.19216 0.99180 0.96879 0.97992 1.22008 0.96642 0.98554 0.90184 1.22292 0.97044 0.97360 1.02819 1.23621 0.96500 0.92652 0.92952 1.68253 1.19892 1.30732 1.02288 1.18993 0.93651 0.93894 0.92875 0.91944 0.89849 0.91745 0.95262 0.89911 0.91848 0.92931 0.94990 0.94879 0.97831 0.99070 0.75563 0.83190 0.80548 0.80224 0.79581 0.80622 0.81584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.82 8.22 71.98 0.59 -2.23 16 2 C -0.07 -2.45 0.83 -50.79 -0.04 -2.49 16 3 C -0.12 -3.99 8.57 71.98 0.62 -3.37 16 4 C 0.14 5.44 6.14 86.86 0.53 5.97 16 5 N -0.62 -32.76 3.38 -691.98 -2.34 -35.10 16 6 C -0.24 -13.70 10.26 84.03 0.86 -12.84 16 7 H 0.09 4.84 7.84 -2.91 -0.02 4.82 16 8 C -0.07 -4.27 5.48 84.86 0.46 -3.80 16 9 N -0.95 -62.91 10.36 21.65 0.22 -62.68 16 10 Si 0.98 48.09 29.56 68.60 2.03 50.12 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 13 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 14 C 0.20 10.89 4.80 86.73 0.42 11.31 16 15 C 0.14 5.95 2.51 46.18 0.12 6.06 16 16 H 0.07 3.18 7.60 -2.39 -0.02 3.16 16 17 N -0.70 -26.01 4.52 -440.15 -1.99 -27.99 16 18 C 0.54 22.91 7.76 86.67 0.67 23.58 16 19 O -0.55 -29.03 14.91 -4.02 -0.06 -29.09 16 20 C -0.15 -5.09 5.91 -19.86 -0.12 -5.21 16 21 C -0.05 -1.10 9.52 22.54 0.21 -0.89 16 22 C -0.13 -1.90 9.93 21.98 0.22 -1.68 16 23 C -0.05 -0.78 9.75 22.36 0.22 -0.56 16 24 C -0.13 -2.91 5.74 -21.29 -0.12 -3.03 16 25 C -0.05 -0.75 9.90 22.52 0.22 -0.53 16 26 C -0.18 -3.04 10.03 22.13 0.22 -2.82 16 27 C 0.11 3.09 11.15 85.02 0.95 4.04 16 28 N -0.50 -19.01 8.44 -187.96 -1.59 -20.60 16 29 C 0.13 4.31 6.61 40.61 0.27 4.58 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.06 1.29 6.38 -2.39 -0.02 1.27 16 33 H 0.03 1.16 7.91 -2.39 -0.02 1.15 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 35 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.05 1.96 8.05 -2.39 -0.02 1.94 16 37 H 0.03 1.17 7.98 -2.38 -0.02 1.15 16 38 H 0.24 15.69 8.31 -92.71 -0.77 14.92 16 39 H 0.00 0.23 7.30 -2.39 -0.02 0.21 16 40 H -0.01 -0.58 7.51 -2.39 -0.02 -0.60 16 41 H 0.41 12.04 4.92 -92.71 -0.46 11.58 16 42 H 0.15 2.67 6.37 -2.91 -0.02 2.65 16 43 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 44 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 45 H 0.19 1.03 8.06 -2.91 -0.02 1.00 16 46 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 47 H 0.17 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -93.82 378.62 3.11 -90.71 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.53 Total: 18.56 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 6.30 Total: 16.08 kcal Atomic # 7 Polarization: -140.69 SS G_CDS: -5.69 Total: -146.38 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.06 Total: -29.09 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -93.82 3.11 -90.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974783766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.216 kcal (2) G-P(sol) polarization free energy of solvation -93.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds