Wall clock time and date at job start Tue Mar 31 2020 23:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53012 * 110.78080 * 2 1 4 4 C 1.54319 * 110.72373 * 236.76041 * 2 1 3 5 5 N 1.47027 * 107.27030 * 263.82963 * 4 2 1 6 6 C 1.36930 * 125.65036 * 181.09262 * 5 4 2 7 7 H 1.08001 * 120.00535 * 185.03527 * 6 5 4 8 8 C 1.38819 * 120.00023 * 5.03015 * 6 5 4 9 9 N 1.31615 * 119.99845 * 5.21406 * 8 6 5 10 10 Si 1.86794 * 120.00001 * 185.20821 * 8 6 5 11 11 H 1.48502 * 109.46899 * 85.00232 * 10 8 6 12 12 H 1.48501 * 109.47178 * 204.99663 * 10 8 6 13 13 H 1.48503 * 109.47440 * 325.00322 * 10 8 6 14 14 C 1.47426 * 108.70204 * 1.05889 * 5 4 2 15 15 C 1.54907 * 104.83153 * 335.87067 * 14 5 4 16 16 H 1.08998 * 111.00588 * 155.12409 * 15 14 5 17 17 N 1.46501 * 111.00630 * 278.93397 * 15 14 5 18 18 C 1.34780 * 119.99951 * 273.55060 * 17 15 14 19 19 O 1.21538 * 119.99842 * 359.97438 * 18 17 15 20 20 C 1.47901 * 119.99786 * 179.97438 * 18 17 15 21 21 C 1.38893 * 121.11529 * 354.11915 * 20 18 17 22 22 C 1.39274 * 119.58444 * 180.02562 * 21 20 18 23 23 N 1.30994 * 121.87944 * 359.97438 * 22 21 20 24 24 C 1.33534 * 121.82768 * 0.04062 * 23 22 21 25 25 C 1.40711 * 120.96223 * 179.97438 * 24 23 22 26 26 C 1.36058 * 119.74141 * 180.22964 * 25 24 23 27 27 C 1.39361 * 121.04823 * 359.45310 * 26 25 24 28 28 C 1.36241 * 120.84297 * 0.57171 * 27 26 25 29 29 C 1.40110 * 119.64162 * 359.71089 * 28 27 26 30 30 H 1.09006 * 109.47832 * 296.76513 * 1 2 3 31 31 H 1.09009 * 109.46835 * 56.76312 * 1 2 3 32 32 H 1.08995 * 109.47538 * 176.76317 * 1 2 3 33 33 H 1.08996 * 109.46715 * 183.23320 * 3 2 1 34 34 H 1.08998 * 109.46463 * 303.23465 * 3 2 1 35 35 H 1.09005 * 109.46875 * 63.23640 * 3 2 1 36 36 H 1.08995 * 109.88309 * 144.41327 * 4 2 1 37 37 H 1.08997 * 109.88171 * 23.24712 * 4 2 1 38 38 H 0.97000 * 120.00381 * 179.97438 * 9 8 6 39 39 H 1.08994 * 110.36826 * 217.03028 * 14 5 4 40 40 H 1.09001 * 110.36616 * 94.70574 * 14 5 4 41 41 H 0.97000 * 119.99926 * 93.54401 * 17 15 14 42 42 H 1.08006 * 120.20593 * 0.04472 * 21 20 18 43 43 H 1.07999 * 119.05618 * 180.02562 * 22 21 20 44 44 H 1.08003 * 120.13073 * 359.95611 * 25 24 23 45 45 H 1.07994 * 119.47700 * 179.74616 * 26 25 24 46 46 H 1.08001 * 119.57497 * 180.29010 * 27 26 25 47 47 H 1.08000 * 120.18446 * 179.68638 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0728 1.4306 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 2.3716 -2.1531 -0.7389 6 6 2.8945 -3.1633 -1.5012 7 1 3.0002 -4.1544 -1.0854 8 6 3.2887 -2.9135 -2.8086 9 7 3.2561 -1.6861 -3.2826 10 14 3.8653 -4.3194 -3.8950 11 1 2.6897 -4.9725 -4.5248 12 1 4.7637 -3.7911 -4.9528 13 1 4.6008 -5.3122 -3.0711 14 6 2.0125 -2.2508 0.6877 15 6 2.0789 -0.7954 1.2138 16 1 1.4400 -0.6663 2.0875 17 7 3.4594 -0.4081 1.5146 18 6 3.9886 -0.6838 2.7231 19 8 3.3203 -1.2533 3.5635 20 6 5.3825 -0.2933 3.0265 21 6 6.2054 0.2484 2.0475 22 6 7.5131 0.6045 2.3682 23 7 7.9976 0.4444 3.5746 24 6 7.2648 -0.0702 4.5653 25 6 7.8040 -0.2345 5.8545 26 6 7.0365 -0.7658 6.8444 27 6 5.7158 -1.1418 6.6066 28 6 5.1603 -0.9978 5.3709 29 6 5.9234 -0.4594 4.3265 30 1 -0.3635 0.4628 0.9176 31 1 -0.3633 0.5633 -0.8596 32 1 -0.3634 -1.0259 -0.0580 33 1 3.1610 1.4062 -0.0580 34 1 1.6751 1.9700 -0.8596 35 1 1.7690 1.9344 0.9176 36 1 2.9868 -0.3206 -1.5774 37 1 1.3263 -0.8255 -1.9977 38 1 3.5319 -1.5115 -4.1960 39 1 2.7292 -2.8786 1.2171 40 1 1.0038 -2.6487 0.7985 41 1 3.9926 0.0467 0.8439 42 1 5.8334 0.3928 1.0438 43 1 8.1454 1.0253 1.6004 44 1 8.8245 0.0558 6.0565 45 1 7.4559 -0.8939 7.8313 46 1 5.1266 -1.5568 7.4110 47 1 4.1373 -1.2974 5.1972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974793199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:38 Heat of formation + Delta-G solvation = 52.930761 kcal Electronic energy + Delta-G solvation = -29752.428412 eV Core-core repulsion = 25900.955890 eV Total energy + Delta-G solvation = -3851.472521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.15829 -39.68656 -37.98138 -37.17631 -34.04289 -33.51946 -32.98806 -31.12639 -30.62357 -30.06964 -27.86407 -26.86983 -25.80484 -25.08600 -23.70386 -23.53027 -22.54500 -20.87848 -20.07599 -18.79781 -18.16146 -17.56414 -17.33743 -16.81962 -15.99607 -15.52871 -15.05187 -14.85658 -14.71723 -14.58899 -14.18877 -13.97610 -13.82311 -13.64079 -13.38698 -13.17579 -13.03261 -12.77628 -12.35177 -11.97634 -11.88610 -11.86332 -11.71142 -11.48460 -11.43583 -11.24573 -10.91767 -10.83782 -10.53922 -10.38335 -10.32840 -10.15976 -10.05776 -9.88570 -9.59309 -9.25450 -8.90390 -8.82962 -8.63795 -8.32416 -6.86785 -5.76006 -3.10559 0.02990 0.69523 1.66292 2.73155 3.15702 3.22631 3.37134 3.42999 3.43645 4.05814 4.14058 4.45820 4.51823 4.58251 4.64359 4.74942 4.92538 5.01563 5.10624 5.23534 5.24663 5.32898 5.44362 5.48563 5.51744 5.58574 5.69758 5.77586 5.82855 5.92872 5.95363 6.00155 6.07207 6.15531 6.21116 6.25081 6.32818 6.41880 6.43642 6.48776 6.57334 6.64339 6.68983 6.77226 6.94961 7.42731 7.54974 7.67532 7.73980 7.74737 8.19820 8.31264 9.16604 9.76548 10.42189 11.33950 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.003435 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.565763 B = 8148.576361 C = 8999.520472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C -0.128 4.128 4 C 0.184 3.816 5 N -0.602 5.602 6 C -0.225 4.225 7 H 0.076 0.924 8 C -0.006 4.006 9 N -0.922 5.922 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.126 3.874 15 C 0.137 3.863 16 H 0.090 0.910 17 N -0.688 5.688 18 C 0.559 3.441 19 O -0.535 6.535 20 C -0.064 4.064 21 C -0.137 4.137 22 C 0.129 3.871 23 N -0.463 5.463 24 C 0.122 3.878 25 C -0.101 4.101 26 C -0.099 4.099 27 C -0.124 4.124 28 C -0.097 4.097 29 C -0.066 4.066 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.252 0.748 39 H 0.043 0.957 40 H 0.030 0.970 41 H 0.403 0.597 42 H 0.145 0.855 43 H 0.167 0.833 44 H 0.134 0.866 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.759 7.976 14.552 17.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.104 4.104 3 C -0.186 4.186 4 C 0.059 3.941 5 N -0.328 5.328 6 C -0.354 4.354 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.569 5.569 10 Si 0.741 3.259 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.208 1.208 14 C -0.001 4.001 15 C 0.032 3.968 16 H 0.108 0.892 17 N -0.338 5.338 18 C 0.345 3.655 19 O -0.414 6.414 20 C -0.076 4.076 21 C -0.157 4.157 22 C -0.043 4.043 23 N -0.171 5.171 24 C 0.001 3.999 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.142 4.142 28 C -0.115 4.115 29 C -0.069 4.069 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.241 0.759 42 H 0.163 0.837 43 H 0.184 0.816 44 H 0.152 0.848 45 H 0.146 0.854 46 H 0.145 0.855 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.206 7.750 15.177 17.553 hybrid contribution -0.170 -0.824 -1.373 1.610 sum 4.036 6.925 13.805 15.963 Atomic orbital electron populations 1.21684 0.93751 1.02162 1.00827 1.22198 0.95943 0.95274 0.96998 1.21676 1.00327 0.95411 1.01171 1.21355 0.98850 0.83813 0.90074 1.44436 1.74366 1.09547 1.04451 1.19036 1.33716 0.89131 0.93480 0.90619 1.24753 1.01437 0.96614 0.97447 1.69913 1.53748 1.17476 1.15803 0.86166 0.78166 0.81263 0.80354 1.21597 1.21699 1.20811 1.21948 0.97950 0.93357 0.86894 1.22263 0.80975 0.96434 0.97098 0.89189 1.45822 1.15194 1.58712 1.14086 1.17968 0.85610 0.79320 0.82580 1.90555 1.61679 1.42539 1.46657 1.20441 0.94661 0.98679 0.93790 1.22530 0.95316 0.97699 1.00194 1.22921 0.92933 0.94911 0.93569 1.67801 1.36868 1.11988 1.00482 1.18890 0.89769 0.97342 0.93940 1.20750 1.00469 1.00215 0.90524 1.20969 0.94267 0.97470 0.99216 1.21087 0.95276 1.00254 0.97545 1.22112 1.02639 0.95353 0.91369 1.18684 0.94549 1.00082 0.93557 0.93484 0.92361 0.92138 0.93066 0.92237 0.93276 0.92068 0.94715 0.93780 0.93875 0.95257 0.75941 0.83726 0.81639 0.84764 0.85423 0.85484 0.81281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.41 37.15 0.31 -1.58 16 2 C -0.10 -1.70 0.81 -152.67 -0.12 -1.83 16 3 C -0.13 -1.78 8.07 37.16 0.30 -1.48 16 4 C 0.18 4.03 4.59 -3.06 -0.01 4.02 16 5 N -0.60 -14.47 3.39 -170.08 -0.58 -15.05 16 6 C -0.23 -6.08 10.27 -15.06 -0.15 -6.24 16 7 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 8 C -0.01 -0.17 5.46 -17.43 -0.10 -0.27 16 9 N -0.92 -25.62 10.40 55.49 0.58 -25.04 16 10 Si 0.91 21.70 29.56 -169.99 -5.02 16.67 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.13 2.59 6.62 -2.53 -0.02 2.57 16 15 C 0.14 2.34 2.56 -65.78 -0.17 2.18 16 16 H 0.09 1.49 7.63 -51.93 -0.40 1.09 16 17 N -0.69 -10.96 4.65 -52.65 -0.24 -11.20 16 18 C 0.56 9.12 7.75 -12.30 -0.10 9.02 16 19 O -0.54 -9.69 13.27 5.33 0.07 -9.62 16 20 C -0.06 -0.95 5.94 -104.34 -0.62 -1.57 16 21 C -0.14 -1.71 9.60 -38.95 -0.37 -2.09 16 22 C 0.13 1.51 11.14 -17.52 -0.20 1.32 16 23 N -0.46 -6.29 10.30 -11.01 -0.11 -6.41 16 24 C 0.12 1.71 6.61 -84.87 -0.56 1.14 16 25 C -0.10 -1.16 9.98 -39.43 -0.39 -1.55 16 26 C -0.10 -0.99 9.94 -39.95 -0.40 -1.39 16 27 C -0.12 -1.37 9.96 -39.88 -0.40 -1.77 16 28 C -0.10 -1.34 9.25 -39.60 -0.37 -1.71 16 29 C -0.07 -0.97 5.76 -106.52 -0.61 -1.59 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.06 0.98 7.57 -51.93 -0.39 0.58 16 33 H 0.05 0.69 6.35 -51.93 -0.33 0.36 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 1.48 6.59 -51.93 -0.34 1.14 16 37 H 0.03 0.86 7.60 -51.93 -0.39 0.47 16 38 H 0.25 6.87 8.31 -40.82 -0.34 6.54 16 39 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.03 0.60 7.80 -51.93 -0.41 0.20 16 41 H 0.40 6.05 5.06 -40.82 -0.21 5.84 16 42 H 0.15 1.58 6.55 -52.48 -0.34 1.24 16 43 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 44 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 45 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 47 H 0.17 2.55 4.98 -52.49 -0.26 2.29 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -31.11 374.82 -10.06 -41.17 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.42 Total: 6.63 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -3.97 Total: -2.80 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.36 Total: -57.70 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.07 Total: -9.62 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.11 -10.06 -41.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974793199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.103 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds