Wall clock time and date at job start Tue Mar 31 2020 23:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 110.78414 * 2 1 4 4 C 1.54327 * 110.71793 * 236.75830 * 2 1 3 5 5 N 1.47019 * 107.27241 * 219.44398 * 4 2 1 6 6 C 1.36935 * 125.65044 * 178.98023 * 5 4 2 7 7 H 1.08005 * 120.00146 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00468 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99668 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00313 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47136 * 89.99918 * 10 8 6 12 12 H 1.48501 * 109.47272 * 210.00036 * 10 8 6 13 13 H 1.48496 * 109.47030 * 329.99788 * 10 8 6 14 14 C 1.47529 * 108.71473 * 358.94403 * 5 4 2 15 15 C 1.54911 * 104.78146 * 24.12126 * 14 5 4 16 16 H 1.09000 * 111.00303 * 204.90251 * 15 14 5 17 17 N 1.46503 * 111.00639 * 81.08805 * 15 14 5 18 18 C 1.34769 * 119.99959 * 89.57773 * 17 15 14 19 19 O 1.21590 * 120.00147 * 0.02562 * 18 17 15 20 20 C 1.47553 * 119.99856 * 179.97438 * 18 17 15 21 21 C 1.38693 * 120.38758 * 354.06003 * 20 18 17 22 22 C 1.38969 * 120.53426 * 180.02562 * 21 20 18 23 23 C 1.36211 * 121.24178 * 359.97438 * 22 21 20 24 24 C 1.40718 * 120.19961 * 0.27356 * 23 22 21 25 25 N 1.33687 * 120.95407 * 179.72312 * 24 23 22 26 26 C 1.31068 * 121.34092 * 180.02562 * 25 24 23 27 27 C 1.39331 * 121.71155 * 359.97438 * 26 25 24 28 28 C 1.36683 * 119.86537 * 359.51050 * 27 26 25 29 29 C 1.40474 * 118.16226 * 0.70382 * 28 27 26 30 30 H 1.09003 * 109.47411 * 296.76113 * 1 2 3 31 31 H 1.09000 * 109.46952 * 56.76108 * 1 2 3 32 32 H 1.09000 * 109.47403 * 176.75999 * 1 2 3 33 33 H 1.08999 * 109.47556 * 183.24197 * 3 2 1 34 34 H 1.09003 * 109.47076 * 303.23958 * 3 2 1 35 35 H 1.08995 * 109.47134 * 63.23602 * 3 2 1 36 36 H 1.08997 * 109.88866 * 338.86815 * 4 2 1 37 37 H 1.09005 * 109.87715 * 99.87403 * 4 2 1 38 38 H 0.96996 * 119.99967 * 179.97438 * 9 8 6 39 39 H 1.08994 * 110.37239 * 265.30595 * 14 5 4 40 40 H 1.09004 * 110.40610 * 142.94908 * 14 5 4 41 41 H 0.97003 * 119.99436 * 269.57961 * 17 15 14 42 42 H 1.07998 * 119.73147 * 0.02562 * 21 20 18 43 43 H 1.08002 * 119.38198 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.90192 * 180.02562 * 23 22 21 45 45 H 1.08004 * 119.14064 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.06531 * 180.02562 * 27 26 25 47 47 H 1.08003 * 120.91391 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0759 -0.7913 -1.2073 5 7 3.2444 -1.5508 -0.7391 6 6 4.0042 -2.3970 -1.5018 7 1 3.7610 -2.5510 -2.5428 8 6 5.0863 -3.0578 -0.9369 9 7 5.3825 -2.8707 0.3318 10 14 6.1232 -4.2116 -1.9776 11 1 7.2331 -3.4500 -2.6047 12 1 6.6833 -5.2852 -1.1180 13 1 5.2774 -4.8170 -3.0375 14 6 3.4636 -1.2499 0.6885 15 6 2.0789 -0.7955 1.2138 16 1 2.1843 -0.1520 2.0872 17 7 1.2270 -1.9488 1.5145 18 6 1.2505 -2.5017 2.7433 19 8 1.9783 -2.0431 3.6025 20 6 0.3921 -3.6630 3.0463 21 6 -0.5302 -4.1157 2.1147 22 6 -1.3406 -5.2088 2.3971 23 6 -1.2537 -5.8637 3.5882 24 6 -0.3359 -5.4364 4.5656 25 7 -0.2417 -6.0646 5.7419 26 6 0.6100 -5.6728 6.6578 27 6 1.4576 -4.5861 6.4527 28 6 1.4189 -3.9069 5.2672 29 6 0.5006 -4.3284 4.2913 30 1 -0.3634 0.4627 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3634 -1.0260 -0.0581 33 1 3.1610 1.4061 -0.0581 34 1 1.6751 1.9700 -0.8595 35 1 1.7691 1.9343 0.9175 36 1 1.3129 -1.4758 -1.5777 37 1 2.3715 -0.1025 -1.9988 38 1 6.1384 -3.3327 0.7267 39 1 4.1933 -0.4479 0.7995 40 1 3.7961 -2.1425 1.2184 41 1 0.6461 -2.3145 0.8290 42 1 -0.6194 -3.6148 1.1621 43 1 -2.0528 -5.5454 1.6582 44 1 -1.8938 -6.7111 3.7847 45 1 0.6559 -6.2061 7.5959 46 1 2.1497 -4.2863 7.2257 47 1 2.0680 -3.0620 5.0903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974878117.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:03 Heat of formation + Delta-G solvation = 55.361283 kcal Electronic energy + Delta-G solvation = -29943.255526 eV Core-core repulsion = 26091.888400 eV Total energy + Delta-G solvation = -3851.367126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.01918 -39.62082 -38.00897 -36.86983 -33.93664 -33.27794 -33.19176 -30.75087 -30.56542 -30.24501 -28.08644 -26.85806 -25.65239 -24.69135 -23.79968 -23.40471 -22.67385 -20.65826 -20.01982 -18.81501 -18.17251 -17.45918 -16.80874 -16.74835 -16.08246 -15.78678 -14.90689 -14.83364 -14.68664 -14.38369 -13.99677 -13.97263 -13.78857 -13.66959 -13.21943 -13.19804 -12.93670 -12.58719 -12.26856 -12.12556 -11.96191 -11.80011 -11.70283 -11.38312 -11.33750 -11.21067 -11.03191 -10.80799 -10.46819 -10.42518 -10.24010 -10.03050 -9.97327 -9.84534 -9.72117 -9.07457 -8.84281 -8.72147 -8.53237 -8.21833 -6.84577 -5.65971 -3.08942 0.15886 0.79178 1.80799 2.68681 3.35362 3.38315 3.43107 3.45696 3.52257 4.16648 4.22176 4.46460 4.64692 4.66796 4.79587 4.89509 4.94890 5.05745 5.09294 5.18827 5.23571 5.30976 5.42017 5.49591 5.57985 5.73978 5.75197 5.82482 5.83763 5.92711 5.97384 6.05606 6.11622 6.15248 6.19452 6.20530 6.34167 6.35193 6.44972 6.53994 6.57686 6.66085 6.70684 6.78495 6.94180 7.43986 7.59504 7.81371 7.85876 7.92101 8.35419 8.56029 9.19113 9.80828 10.44410 11.36836 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010293 B = 0.003969 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.556405 B = 7052.534629 C = 8200.874481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.128 4.128 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.226 4.226 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.917 5.917 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.146 3.854 15 C 0.122 3.878 16 H 0.089 0.911 17 N -0.690 5.690 18 C 0.560 3.440 19 O -0.537 6.537 20 C -0.098 4.098 21 C -0.079 4.079 22 C -0.108 4.108 23 C -0.074 4.074 24 C 0.118 3.882 25 N -0.483 5.483 26 C 0.131 3.869 27 C -0.185 4.185 28 C -0.054 4.054 29 C -0.067 4.067 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.021 0.979 37 H 0.024 0.976 38 H 0.252 0.748 39 H 0.022 0.978 40 H 0.114 0.886 41 H 0.396 0.604 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.157 0.843 46 H 0.137 0.863 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.342 0.234 6.978 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.088 4.088 3 C -0.186 4.186 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.354 4.354 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.021 3.979 15 C 0.017 3.983 16 H 0.107 0.893 17 N -0.339 5.339 18 C 0.347 3.653 19 O -0.417 6.417 20 C -0.102 4.102 21 C -0.098 4.098 22 C -0.128 4.128 23 C -0.093 4.093 24 C -0.003 4.003 25 N -0.191 5.191 26 C -0.042 4.042 27 C -0.205 4.205 28 C -0.079 4.079 29 C -0.069 4.069 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.040 0.960 40 H 0.131 0.869 41 H 0.233 0.767 42 H 0.149 0.851 43 H 0.153 0.847 44 H 0.155 0.845 45 H 0.174 0.826 46 H 0.155 0.845 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.226 -0.277 7.623 16.142 hybrid contribution 0.945 -0.153 -1.135 1.485 sum -13.281 -0.430 6.488 14.787 Atomic orbital electron populations 1.21725 0.94618 1.01117 1.01436 1.21850 0.94831 0.95825 0.96343 1.21682 1.01961 0.94003 1.00935 1.21410 0.90310 0.92968 0.93645 1.44480 1.30666 1.50250 1.07306 1.19021 1.06474 1.17089 0.92860 0.90562 1.24779 0.98724 1.00534 0.96315 1.69792 1.29919 1.45995 1.10781 0.86125 0.80355 0.80352 0.78959 1.21614 1.21711 1.20743 1.22335 0.89042 1.01426 0.85113 1.22596 0.93336 0.85884 0.96457 0.89281 1.45730 1.43638 1.32620 1.11920 1.17943 0.81998 0.82628 0.82736 1.90531 1.41819 1.63047 1.46343 1.20014 0.98327 0.97342 0.94538 1.21432 0.94117 0.95958 0.98316 1.20804 0.99440 0.95455 0.97102 1.20935 0.96863 0.99447 0.92059 1.18835 0.95936 0.92753 0.92756 1.68027 1.20821 1.29172 1.01062 1.22966 0.90276 0.93446 0.97468 1.22043 1.01532 0.97780 0.99111 1.22760 0.95053 0.99000 0.91044 1.18646 0.97507 0.96264 0.94530 0.92733 0.92591 0.93092 0.91699 0.92650 0.93028 0.96135 0.95796 0.93674 0.96026 0.86889 0.76743 0.85065 0.84652 0.84539 0.82580 0.84492 0.80193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.07 37.16 0.30 -1.33 16 2 C -0.09 -1.38 0.80 -152.68 -0.12 -1.50 16 3 C -0.13 -1.85 8.41 37.15 0.31 -1.54 16 4 C 0.14 2.75 6.41 -3.06 -0.02 2.73 16 5 N -0.60 -14.60 3.40 -169.99 -0.58 -15.18 16 6 C -0.23 -6.13 10.27 -15.06 -0.15 -6.28 16 7 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -26.81 10.09 55.49 0.56 -26.25 16 10 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.15 3.49 5.28 -2.47 -0.01 3.47 16 15 C 0.12 2.26 2.61 -65.78 -0.17 2.09 16 16 H 0.09 1.66 7.53 -51.93 -0.39 1.27 16 17 N -0.69 -11.70 4.57 -52.76 -0.24 -11.94 16 18 C 0.56 10.02 7.73 -12.47 -0.10 9.93 16 19 O -0.54 -10.89 13.10 5.29 0.07 -10.82 16 20 C -0.10 -1.54 5.90 -104.65 -0.62 -2.16 16 21 C -0.08 -0.99 9.51 -39.14 -0.37 -1.37 16 22 C -0.11 -1.17 9.92 -40.04 -0.40 -1.57 16 23 C -0.07 -0.90 9.96 -39.37 -0.39 -1.29 16 24 C 0.12 1.75 6.60 -84.88 -0.56 1.19 16 25 N -0.48 -6.87 10.34 -10.99 -0.11 -6.98 16 26 C 0.13 1.58 11.15 -17.47 -0.19 1.38 16 27 C -0.18 -2.31 10.03 -39.74 -0.40 -2.71 16 28 C -0.05 -0.83 9.29 -39.30 -0.37 -1.20 16 29 C -0.07 -1.06 5.76 -106.53 -0.61 -1.68 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.59 6.42 -51.93 -0.33 0.26 16 33 H 0.06 1.07 7.57 -51.93 -0.39 0.68 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.02 0.39 7.76 -51.93 -0.40 -0.02 16 37 H 0.02 0.47 7.84 -51.93 -0.41 0.06 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.02 0.56 7.80 -51.93 -0.41 0.15 16 40 H 0.11 3.16 5.88 -51.93 -0.31 2.85 16 41 H 0.40 5.97 5.10 -40.82 -0.21 5.76 16 42 H 0.13 1.37 6.43 -52.49 -0.34 1.03 16 43 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 45 H 0.16 1.30 8.06 -52.48 -0.42 0.87 16 46 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.18 3.08 4.96 -52.50 -0.26 2.82 16 LS Contribution 373.81 15.07 5.63 5.63 Total: -1.00 -32.56 373.81 -10.04 -42.60 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.37 Total: 8.05 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -3.97 Total: -2.15 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.37 Total: -60.35 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.07 Total: -10.82 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.56 -10.04 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974878117.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.966 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds