Wall clock time and date at job start Tue Mar 31 2020 23:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 110.78414 * 2 1 4 4 C 1.54327 * 110.71793 * 236.75830 * 2 1 3 5 5 N 1.47019 * 107.27241 * 219.44398 * 4 2 1 6 6 C 1.36935 * 125.65044 * 178.98023 * 5 4 2 7 7 H 1.08005 * 120.00146 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00468 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99668 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00313 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47136 * 89.99918 * 10 8 6 12 12 H 1.48501 * 109.47272 * 210.00036 * 10 8 6 13 13 H 1.48496 * 109.47030 * 329.99788 * 10 8 6 14 14 C 1.47529 * 108.71473 * 358.94403 * 5 4 2 15 15 C 1.54911 * 104.78146 * 24.12126 * 14 5 4 16 16 H 1.09000 * 111.00303 * 204.90251 * 15 14 5 17 17 N 1.46503 * 111.00639 * 81.08805 * 15 14 5 18 18 C 1.34769 * 119.99959 * 89.57773 * 17 15 14 19 19 O 1.21590 * 120.00147 * 0.02562 * 18 17 15 20 20 C 1.47553 * 119.99856 * 179.97438 * 18 17 15 21 21 C 1.38693 * 120.38758 * 354.06003 * 20 18 17 22 22 C 1.38969 * 120.53426 * 180.02562 * 21 20 18 23 23 C 1.36211 * 121.24178 * 359.97438 * 22 21 20 24 24 C 1.40718 * 120.19961 * 0.27356 * 23 22 21 25 25 N 1.33687 * 120.95407 * 179.72312 * 24 23 22 26 26 C 1.31068 * 121.34092 * 180.02562 * 25 24 23 27 27 C 1.39331 * 121.71155 * 359.97438 * 26 25 24 28 28 C 1.36683 * 119.86537 * 359.51050 * 27 26 25 29 29 C 1.40474 * 118.16226 * 0.70382 * 28 27 26 30 30 H 1.09003 * 109.47411 * 296.76113 * 1 2 3 31 31 H 1.09000 * 109.46952 * 56.76108 * 1 2 3 32 32 H 1.09000 * 109.47403 * 176.75999 * 1 2 3 33 33 H 1.08999 * 109.47556 * 183.24197 * 3 2 1 34 34 H 1.09003 * 109.47076 * 303.23958 * 3 2 1 35 35 H 1.08995 * 109.47134 * 63.23602 * 3 2 1 36 36 H 1.08997 * 109.88866 * 338.86815 * 4 2 1 37 37 H 1.09005 * 109.87715 * 99.87403 * 4 2 1 38 38 H 0.96996 * 119.99967 * 179.97438 * 9 8 6 39 39 H 1.08994 * 110.37239 * 265.30595 * 14 5 4 40 40 H 1.09004 * 110.40610 * 142.94908 * 14 5 4 41 41 H 0.97003 * 119.99436 * 269.57961 * 17 15 14 42 42 H 1.07998 * 119.73147 * 0.02562 * 21 20 18 43 43 H 1.08002 * 119.38198 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.90192 * 180.02562 * 23 22 21 45 45 H 1.08004 * 119.14064 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.06531 * 180.02562 * 27 26 25 47 47 H 1.08003 * 120.91391 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0759 -0.7913 -1.2073 5 7 3.2444 -1.5508 -0.7391 6 6 4.0042 -2.3970 -1.5018 7 1 3.7610 -2.5510 -2.5428 8 6 5.0863 -3.0578 -0.9369 9 7 5.3825 -2.8707 0.3318 10 14 6.1232 -4.2116 -1.9776 11 1 7.2331 -3.4500 -2.6047 12 1 6.6833 -5.2852 -1.1180 13 1 5.2774 -4.8170 -3.0375 14 6 3.4636 -1.2499 0.6885 15 6 2.0789 -0.7955 1.2138 16 1 2.1843 -0.1520 2.0872 17 7 1.2270 -1.9488 1.5145 18 6 1.2505 -2.5017 2.7433 19 8 1.9783 -2.0431 3.6025 20 6 0.3921 -3.6630 3.0463 21 6 -0.5302 -4.1157 2.1147 22 6 -1.3406 -5.2088 2.3971 23 6 -1.2537 -5.8637 3.5882 24 6 -0.3359 -5.4364 4.5656 25 7 -0.2417 -6.0646 5.7419 26 6 0.6100 -5.6728 6.6578 27 6 1.4576 -4.5861 6.4527 28 6 1.4189 -3.9069 5.2672 29 6 0.5006 -4.3284 4.2913 30 1 -0.3634 0.4627 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3634 -1.0260 -0.0581 33 1 3.1610 1.4061 -0.0581 34 1 1.6751 1.9700 -0.8595 35 1 1.7691 1.9343 0.9175 36 1 1.3129 -1.4758 -1.5777 37 1 2.3715 -0.1025 -1.9988 38 1 6.1384 -3.3327 0.7267 39 1 4.1933 -0.4479 0.7995 40 1 3.7961 -2.1425 1.2184 41 1 0.6461 -2.3145 0.8290 42 1 -0.6194 -3.6148 1.1621 43 1 -2.0528 -5.5454 1.6582 44 1 -1.8938 -6.7111 3.7847 45 1 0.6559 -6.2061 7.5959 46 1 2.1497 -4.2863 7.2257 47 1 2.0680 -3.0620 5.0903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974878117.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:02 Heat of formation + Delta-G solvation = 35.147224 kcal Electronic energy + Delta-G solvation = -29944.132073 eV Core-core repulsion = 26091.888400 eV Total energy + Delta-G solvation = -3852.243673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.12186 -40.98707 -39.42980 -37.90460 -35.71754 -34.66273 -34.31592 -32.60771 -31.55102 -31.39441 -29.64212 -28.04504 -27.41391 -25.84955 -25.17045 -24.43532 -24.02357 -22.23692 -21.52973 -20.16642 -19.24197 -18.71900 -18.55968 -17.89357 -17.32336 -17.12121 -16.62922 -16.16054 -15.84319 -15.65265 -15.57932 -15.22083 -15.15566 -14.80689 -14.64499 -14.25873 -14.11028 -13.87411 -13.73879 -13.62656 -13.09229 -13.04516 -12.98570 -12.85871 -12.70956 -12.63707 -12.57638 -12.33137 -12.11395 -11.79077 -11.76254 -11.51899 -11.45279 -11.36300 -11.22936 -10.78407 -10.26776 -10.05192 -9.82387 -9.31170 -8.84986 -7.76568 -5.21219 -0.88623 -0.19955 0.68634 1.43375 1.44810 1.53416 1.66393 2.06502 2.26691 2.47790 3.10776 3.30666 3.33482 3.51473 3.57163 3.69157 3.75050 3.81579 3.87749 3.96611 4.06263 4.07198 4.16510 4.40322 4.41870 4.44850 4.51211 4.70211 4.79350 4.80957 4.83627 4.87261 4.92942 5.00284 5.04118 5.10113 5.15173 5.20820 5.23894 5.31070 5.33747 5.34541 5.48544 5.52817 5.57881 5.68589 5.79551 5.82993 6.30499 6.53491 6.84020 7.08578 7.21549 7.78912 8.42305 9.23903 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010293 B = 0.003969 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.556405 B = 7052.534629 C = 8200.874481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.137 3.863 5 N -0.618 5.618 6 C -0.231 4.231 7 H 0.085 0.915 8 C -0.067 4.067 9 N -0.949 5.949 10 Si 0.974 3.026 11 H -0.288 1.288 12 H -0.301 1.301 13 H -0.264 1.264 14 C 0.155 3.845 15 C 0.136 3.864 16 H 0.083 0.917 17 N -0.683 5.683 18 C 0.554 3.446 19 O -0.573 6.573 20 C -0.135 4.135 21 C -0.063 4.063 22 C -0.101 4.101 23 C -0.070 4.070 24 C 0.095 3.905 25 N -0.493 5.493 26 C 0.129 3.871 27 C -0.173 4.173 28 C -0.091 4.091 29 C -0.087 4.087 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.037 0.963 37 H 0.026 0.974 38 H 0.241 0.759 39 H -0.014 1.014 40 H 0.068 0.932 41 H 0.407 0.593 42 H 0.154 0.846 43 H 0.180 0.820 44 H 0.162 0.838 45 H 0.198 0.802 46 H 0.164 0.836 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.769 -0.687 5.839 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.074 4.074 3 C -0.184 4.184 4 C 0.013 3.987 5 N -0.344 5.344 6 C -0.360 4.360 7 H 0.103 0.897 8 C -0.260 4.260 9 N -0.599 5.599 10 Si 0.803 3.197 11 H -0.215 1.215 12 H -0.228 1.228 13 H -0.189 1.189 14 C 0.029 3.971 15 C 0.030 3.970 16 H 0.101 0.899 17 N -0.333 5.333 18 C 0.343 3.657 19 O -0.455 6.455 20 C -0.139 4.139 21 C -0.082 4.082 22 C -0.120 4.120 23 C -0.089 4.089 24 C -0.025 4.025 25 N -0.201 5.201 26 C -0.043 4.043 27 C -0.193 4.193 28 C -0.116 4.116 29 C -0.089 4.089 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.004 0.996 40 H 0.086 0.914 41 H 0.245 0.755 42 H 0.172 0.828 43 H 0.197 0.803 44 H 0.180 0.820 45 H 0.214 0.786 46 H 0.181 0.819 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.707 -1.186 6.439 18.879 hybrid contribution 2.003 0.122 -0.752 2.144 sum -15.704 -1.064 5.687 16.736 Atomic orbital electron populations 1.21707 0.90979 1.02429 1.03166 1.21833 0.97516 0.95397 0.92665 1.21691 1.00014 0.93644 1.03066 1.21659 0.88861 0.93126 0.95091 1.44704 1.31805 1.50441 1.07405 1.19444 1.06433 1.16657 0.93461 0.89682 1.25588 1.00411 1.02654 0.97330 1.70111 1.30097 1.47195 1.12490 0.85135 0.78838 0.78138 0.77611 1.21539 1.22809 1.18879 1.21957 0.91642 0.98254 0.85293 1.22238 0.91034 0.86524 0.97245 0.89917 1.45587 1.43312 1.32293 1.12087 1.18459 0.81774 0.83013 0.82458 1.90524 1.43357 1.64201 1.47429 1.19912 1.00259 0.97748 0.95995 1.21806 0.92456 0.95851 0.98106 1.21250 0.99242 0.94077 0.97476 1.21342 0.95994 0.99836 0.91718 1.19219 0.96703 0.92770 0.93836 1.68099 1.21456 1.29318 1.01273 1.23600 0.89152 0.93090 0.98448 1.22363 1.01398 0.97085 0.98416 1.22657 0.96169 0.99768 0.93017 1.18851 0.98127 0.97136 0.94814 0.91577 0.90213 0.92133 0.94811 0.90087 0.91257 0.94470 0.95587 0.94886 0.99599 0.91411 0.75481 0.82840 0.80261 0.82037 0.78569 0.81873 0.82774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 8.07 71.98 0.58 -2.07 16 2 C -0.07 -2.20 0.80 -50.99 -0.04 -2.25 16 3 C -0.13 -3.50 8.41 71.98 0.61 -2.90 16 4 C 0.14 5.13 6.41 86.73 0.56 5.69 16 5 N -0.62 -30.67 3.40 -691.72 -2.35 -33.02 16 6 C -0.23 -12.70 10.27 84.03 0.86 -11.83 16 7 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 8 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 9 N -0.95 -58.73 10.09 21.65 0.22 -58.51 16 10 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 12 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 13 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 14 C 0.15 7.83 5.28 86.84 0.46 8.29 16 15 C 0.14 5.14 2.61 46.38 0.12 5.27 16 16 H 0.08 3.25 7.53 -2.39 -0.02 3.23 16 17 N -0.68 -23.41 4.57 -439.10 -2.01 -25.42 16 18 C 0.55 20.80 7.73 86.70 0.67 21.47 16 19 O -0.57 -25.22 13.10 -4.00 -0.05 -25.27 16 20 C -0.14 -4.31 5.90 -19.89 -0.12 -4.43 16 21 C -0.06 -1.47 9.51 22.55 0.21 -1.25 16 22 C -0.10 -1.84 9.92 21.97 0.22 -1.62 16 23 C -0.07 -1.52 9.96 22.40 0.22 -1.29 16 24 C 0.10 2.74 6.60 40.27 0.27 3.01 16 25 N -0.49 -13.39 10.34 -188.69 -1.95 -15.34 16 26 C 0.13 2.94 11.15 85.07 0.95 3.89 16 27 C -0.17 -4.35 10.03 22.17 0.22 -4.13 16 28 C -0.09 -3.00 9.29 22.45 0.21 -2.80 16 29 C -0.09 -2.84 5.76 -21.10 -0.12 -2.96 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.17 6.42 -2.39 -0.02 1.16 16 33 H 0.03 1.13 7.57 -2.39 -0.02 1.11 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.04 1.29 7.76 -2.39 -0.02 1.27 16 37 H 0.03 0.98 7.84 -2.38 -0.02 0.96 16 38 H 0.24 14.80 8.31 -92.71 -0.77 14.03 16 39 H -0.01 -0.77 7.80 -2.39 -0.02 -0.79 16 40 H 0.07 4.09 5.88 -2.38 -0.01 4.07 16 41 H 0.41 11.76 5.10 -92.71 -0.47 11.28 16 42 H 0.15 2.73 6.43 -2.91 -0.02 2.71 16 43 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 45 H 0.20 2.69 8.06 -2.91 -0.02 2.66 16 46 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 47 H 0.16 5.89 4.96 -3.20 -0.02 5.87 16 Total: -1.00 -77.75 373.81 2.75 -74.99 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.53 Total: 27.50 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 6.34 Total: 6.67 kcal Atomic # 7 Polarization: -126.20 SS G_CDS: -6.09 Total: -132.29 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.05 Total: -25.27 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -77.75 2.75 -74.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974878117.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.141 kcal (2) G-P(sol) polarization free energy of solvation -77.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds