Wall clock time and date at job start Tue Mar 31 2020 23:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 110.78071 * 2 1 4 4 C 1.54320 * 110.72304 * 236.76111 * 2 1 3 5 5 N 1.47032 * 107.27003 * 263.82931 * 4 2 1 6 6 C 1.36933 * 125.64732 * 181.09016 * 5 4 2 7 7 H 1.08004 * 119.99748 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99970 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00000 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99757 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47214 * 60.00319 * 10 8 6 12 12 H 1.48507 * 109.46714 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47430 * 299.99771 * 10 8 6 14 14 C 1.47425 * 108.69998 * 1.06048 * 5 4 2 15 15 C 1.54906 * 104.83333 * 335.86446 * 14 5 4 16 16 H 1.09005 * 111.00279 * 155.12271 * 15 14 5 17 17 N 1.46497 * 111.01123 * 278.94031 * 15 14 5 18 18 C 1.34770 * 119.99922 * 273.54965 * 17 15 14 19 19 O 1.21588 * 120.00090 * 359.97438 * 18 17 15 20 20 C 1.47557 * 119.99865 * 179.97438 * 18 17 15 21 21 C 1.38689 * 120.38661 * 354.05127 * 20 18 17 22 22 C 1.38971 * 120.53567 * 179.66666 * 21 20 18 23 23 C 1.36209 * 121.23730 * 0.62213 * 22 21 20 24 24 C 1.40716 * 120.19724 * 359.40292 * 23 22 21 25 25 N 1.33692 * 120.93743 * 180.25207 * 24 23 22 26 26 C 1.31066 * 121.34091 * 179.97438 * 25 24 23 27 27 C 1.39335 * 121.70650 * 0.04339 * 26 25 24 28 28 C 1.36681 * 119.86666 * 359.97438 * 27 26 25 29 29 C 1.40466 * 118.17146 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.46709 * 296.76162 * 1 2 3 31 31 H 1.09002 * 109.47009 * 56.76044 * 1 2 3 32 32 H 1.08999 * 109.46887 * 176.76560 * 1 2 3 33 33 H 1.08996 * 109.46936 * 183.23815 * 3 2 1 34 34 H 1.08992 * 109.46771 * 303.23817 * 3 2 1 35 35 H 1.09004 * 109.46998 * 63.23915 * 3 2 1 36 36 H 1.08998 * 109.88432 * 144.41524 * 4 2 1 37 37 H 1.08998 * 109.88101 * 23.24640 * 4 2 1 38 38 H 0.96996 * 120.00059 * 180.02562 * 9 8 6 39 39 H 1.09008 * 110.36046 * 217.02972 * 14 5 4 40 40 H 1.08992 * 110.36991 * 94.71427 * 14 5 4 41 41 H 0.96994 * 119.99777 * 93.54121 * 17 15 14 42 42 H 1.07997 * 119.73220 * 0.02562 * 21 20 18 43 43 H 1.08006 * 119.38475 * 180.30227 * 22 21 20 44 44 H 1.08001 * 119.90407 * 179.68033 * 23 22 21 45 45 H 1.07994 * 119.14437 * 180.02562 * 26 25 24 46 46 H 1.08002 * 120.06742 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.91040 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 6 2.0761 -0.7912 -1.2072 5 7 2.3717 -2.1532 -0.7389 6 6 2.8945 -3.1633 -1.5013 7 1 3.1250 -2.9904 -2.5422 8 6 3.1283 -4.4096 -0.9363 9 7 2.8469 -4.6204 0.3320 10 14 3.8422 -5.7873 -1.9762 11 1 5.1698 -5.3758 -2.4992 12 1 3.9941 -7.0078 -1.1440 13 1 2.9297 -6.0739 -3.1123 14 6 2.0126 -2.2509 0.6876 15 6 2.0790 -0.7954 1.2139 16 1 1.4401 -0.6663 2.0875 17 7 3.4595 -0.4081 1.5145 18 6 3.9887 -0.6838 2.7229 19 8 3.3203 -1.2536 3.5637 20 6 5.3794 -0.2942 3.0256 21 6 6.1883 0.2441 2.0360 22 6 7.4963 0.6185 2.3193 23 6 8.0231 0.4575 3.5650 24 6 7.2393 -0.0850 4.6002 25 7 7.7397 -0.2449 5.8296 26 6 7.0166 -0.7488 6.7997 27 6 5.6952 -1.1428 6.5995 28 6 5.1237 -1.0061 5.3655 29 6 5.9031 -0.4644 4.3300 30 1 -0.3633 0.4627 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0580 33 1 3.1610 1.4062 -0.0580 34 1 1.6751 1.9700 -0.8595 35 1 1.7691 1.9344 0.9176 36 1 2.9869 -0.3207 -1.5775 37 1 1.3264 -0.8255 -1.9977 38 1 3.0105 -5.4911 0.7268 39 1 2.7293 -2.8788 1.2170 40 1 1.0040 -2.6488 0.7986 41 1 3.9926 0.0466 0.8439 42 1 5.7968 0.3787 1.0385 43 1 8.1084 1.0403 1.5357 44 1 9.0439 0.7511 3.7601 45 1 7.4566 -0.8619 7.7794 46 1 5.1237 -1.5553 7.4178 47 1 4.1007 -1.3055 5.1916 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974878119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:07 Heat of formation + Delta-G solvation = 55.869297 kcal Electronic energy + Delta-G solvation = -29944.222740 eV Core-core repulsion = 26092.877643 eV Total energy + Delta-G solvation = -3851.345097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.01910 -39.62070 -38.00375 -36.86553 -33.93801 -33.28198 -33.18338 -30.74873 -30.56600 -30.24192 -28.08488 -26.85621 -25.64803 -24.68986 -23.80201 -23.40283 -22.67440 -20.67206 -19.98855 -18.81586 -18.16417 -17.45391 -16.80580 -16.73288 -16.08743 -15.80916 -14.88924 -14.82187 -14.69503 -14.38431 -14.02255 -13.91882 -13.78842 -13.69805 -13.23059 -13.20419 -12.87629 -12.60776 -12.25763 -12.12426 -11.96861 -11.79237 -11.69776 -11.37899 -11.34284 -11.20496 -11.04411 -10.78388 -10.48681 -10.41049 -10.26660 -10.02711 -9.96555 -9.82994 -9.71590 -9.08135 -8.84405 -8.70066 -8.52816 -8.21782 -6.83965 -5.64939 -3.08178 0.16059 0.78999 1.80465 2.69156 3.38613 3.39444 3.43313 3.45433 3.49971 4.16274 4.21877 4.47017 4.65061 4.68091 4.79671 4.89194 4.95517 5.04999 5.09445 5.18531 5.23349 5.31163 5.41822 5.49984 5.58385 5.73481 5.75878 5.82344 5.83507 5.92865 5.97499 6.05545 6.11761 6.14932 6.20313 6.20590 6.34286 6.34631 6.45106 6.53964 6.57751 6.66165 6.70834 6.78236 6.94515 7.44897 7.59673 7.82059 7.85421 7.93339 8.36920 8.57402 9.19979 9.81622 10.45255 11.37637 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.003908 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.386611 B = 7163.143992 C = 8232.259495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.132 4.132 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.228 4.228 7 H 0.076 0.924 8 C -0.007 4.007 9 N -0.917 5.917 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.146 3.854 15 C 0.123 3.877 16 H 0.087 0.913 17 N -0.691 5.691 18 C 0.560 3.440 19 O -0.536 6.536 20 C -0.099 4.099 21 C -0.078 4.078 22 C -0.108 4.108 23 C -0.074 4.074 24 C 0.118 3.882 25 N -0.482 5.482 26 C 0.130 3.870 27 C -0.185 4.185 28 C -0.054 4.054 29 C -0.067 4.067 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.021 0.979 37 H 0.024 0.976 38 H 0.253 0.747 39 H 0.114 0.886 40 H 0.021 0.979 41 H 0.396 0.604 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.157 0.843 46 H 0.137 0.863 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.729 13.830 7.082 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.356 4.356 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.021 3.979 15 C 0.018 3.982 16 H 0.105 0.895 17 N -0.340 5.340 18 C 0.347 3.653 19 O -0.415 6.415 20 C -0.103 4.103 21 C -0.097 4.097 22 C -0.128 4.128 23 C -0.093 4.093 24 C -0.003 4.003 25 N -0.190 5.190 26 C -0.042 4.042 27 C -0.205 4.205 28 C -0.079 4.079 29 C -0.070 4.070 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.064 0.936 39 H 0.132 0.868 40 H 0.039 0.961 41 H 0.232 0.768 42 H 0.150 0.850 43 H 0.154 0.846 44 H 0.155 0.845 45 H 0.174 0.826 46 H 0.155 0.845 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 5.177 13.474 7.713 16.366 hybrid contribution -0.181 -0.917 -1.131 1.467 sum 4.996 12.557 6.582 15.032 Atomic orbital electron populations 1.21684 0.93402 1.02561 1.00934 1.21848 0.96136 0.94511 0.96330 1.21731 1.00249 0.95499 1.01470 1.21415 0.96445 0.86837 0.93641 1.44449 1.74237 1.06662 1.07325 1.18972 1.34459 0.89284 0.92867 0.90621 1.24779 1.01601 0.97602 0.96317 1.69779 1.53403 1.22446 1.10806 0.86208 0.78900 0.81668 0.79015 1.21223 1.21592 1.21218 1.22316 1.00213 0.90296 0.85107 1.22585 0.80798 0.98453 0.96358 0.89459 1.45739 1.15128 1.59114 1.14055 1.17934 0.85784 0.79058 0.82522 1.90535 1.61943 1.42398 1.46667 1.20018 0.94764 1.01853 0.93647 1.21458 0.93953 0.95570 0.98714 1.20816 0.95206 0.99813 0.96925 1.20935 0.99798 0.97182 0.91422 1.18836 0.90910 0.98379 0.92185 1.68029 1.36916 1.14443 0.99654 1.22962 0.91153 0.92306 0.97801 1.22039 0.96803 1.02889 0.98756 1.22751 1.02928 0.91245 0.91017 1.18644 0.94473 0.99979 0.93856 0.93031 0.92640 0.91690 0.93076 0.92556 0.92714 0.96125 0.95784 0.93604 0.86812 0.96074 0.76797 0.84977 0.84634 0.84541 0.82597 0.84517 0.80221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.41 37.16 0.31 -1.54 16 2 C -0.09 -1.38 0.81 -152.67 -0.12 -1.50 16 3 C -0.13 -1.63 8.07 37.16 0.30 -1.33 16 4 C 0.14 2.75 6.41 -3.06 -0.02 2.73 16 5 N -0.60 -14.62 3.39 -170.07 -0.58 -15.20 16 6 C -0.23 -6.18 10.27 -15.06 -0.15 -6.33 16 7 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 8 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 9 N -0.92 -26.90 10.09 55.49 0.56 -26.34 16 10 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.15 3.49 5.27 -2.53 -0.01 3.48 16 15 C 0.12 2.28 2.56 -65.78 -0.17 2.11 16 16 H 0.09 1.63 7.63 -51.93 -0.40 1.23 16 17 N -0.69 -11.72 4.64 -52.76 -0.24 -11.97 16 18 C 0.56 10.09 7.73 -12.46 -0.10 9.99 16 19 O -0.54 -10.96 13.15 5.29 0.07 -10.89 16 20 C -0.10 -1.56 5.90 -104.65 -0.62 -2.18 16 21 C -0.08 -1.00 9.51 -39.14 -0.37 -1.37 16 22 C -0.11 -1.18 9.92 -40.04 -0.40 -1.58 16 23 C -0.07 -0.90 9.96 -39.38 -0.39 -1.30 16 24 C 0.12 1.73 6.60 -84.88 -0.56 1.17 16 25 N -0.48 -6.82 10.34 -10.99 -0.11 -6.93 16 26 C 0.13 1.55 11.15 -17.47 -0.19 1.35 16 27 C -0.18 -2.27 10.03 -39.74 -0.40 -2.67 16 28 C -0.05 -0.83 9.29 -39.31 -0.37 -1.20 16 29 C -0.07 -1.06 5.76 -106.54 -0.61 -1.67 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.07 7.57 -51.93 -0.39 0.68 16 33 H 0.05 0.60 6.35 -51.93 -0.33 0.27 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.02 0.39 7.76 -51.93 -0.40 -0.01 16 37 H 0.02 0.47 7.84 -51.93 -0.41 0.07 16 38 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.11 3.20 5.87 -51.92 -0.30 2.89 16 40 H 0.02 0.55 7.80 -51.93 -0.41 0.14 16 41 H 0.40 5.91 4.95 -40.82 -0.20 5.71 16 42 H 0.13 1.46 6.43 -52.49 -0.34 1.13 16 43 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 44 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 47 H 0.18 3.01 4.96 -52.50 -0.26 2.75 16 LS Contribution 373.76 15.07 5.63 5.63 Total: -1.00 -32.67 373.76 -10.04 -42.70 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -6.37 Total: 8.06 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -3.97 Total: -2.12 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: -0.38 Total: -60.43 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.07 Total: -10.89 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.67 -10.04 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974878119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.574 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds