Wall clock time and date at job start Tue Mar 31 2020 23:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 110.78071 * 2 1 4 4 C 1.54320 * 110.72304 * 236.76111 * 2 1 3 5 5 N 1.47032 * 107.27003 * 263.82931 * 4 2 1 6 6 C 1.36933 * 125.64732 * 181.09016 * 5 4 2 7 7 H 1.08004 * 119.99748 * 359.97438 * 6 5 4 8 8 C 1.38812 * 119.99970 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00000 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99757 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47214 * 60.00319 * 10 8 6 12 12 H 1.48507 * 109.46714 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47430 * 299.99771 * 10 8 6 14 14 C 1.47425 * 108.69998 * 1.06048 * 5 4 2 15 15 C 1.54906 * 104.83333 * 335.86446 * 14 5 4 16 16 H 1.09005 * 111.00279 * 155.12271 * 15 14 5 17 17 N 1.46497 * 111.01123 * 278.94031 * 15 14 5 18 18 C 1.34770 * 119.99922 * 273.54965 * 17 15 14 19 19 O 1.21588 * 120.00090 * 359.97438 * 18 17 15 20 20 C 1.47557 * 119.99865 * 179.97438 * 18 17 15 21 21 C 1.38689 * 120.38661 * 354.05127 * 20 18 17 22 22 C 1.38971 * 120.53567 * 179.66666 * 21 20 18 23 23 C 1.36209 * 121.23730 * 0.62213 * 22 21 20 24 24 C 1.40716 * 120.19724 * 359.40292 * 23 22 21 25 25 N 1.33692 * 120.93743 * 180.25207 * 24 23 22 26 26 C 1.31066 * 121.34091 * 179.97438 * 25 24 23 27 27 C 1.39335 * 121.70650 * 0.04339 * 26 25 24 28 28 C 1.36681 * 119.86666 * 359.97438 * 27 26 25 29 29 C 1.40466 * 118.17146 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.46709 * 296.76162 * 1 2 3 31 31 H 1.09002 * 109.47009 * 56.76044 * 1 2 3 32 32 H 1.08999 * 109.46887 * 176.76560 * 1 2 3 33 33 H 1.08996 * 109.46936 * 183.23815 * 3 2 1 34 34 H 1.08992 * 109.46771 * 303.23817 * 3 2 1 35 35 H 1.09004 * 109.46998 * 63.23915 * 3 2 1 36 36 H 1.08998 * 109.88432 * 144.41524 * 4 2 1 37 37 H 1.08998 * 109.88101 * 23.24640 * 4 2 1 38 38 H 0.96996 * 120.00059 * 180.02562 * 9 8 6 39 39 H 1.09008 * 110.36046 * 217.02972 * 14 5 4 40 40 H 1.08992 * 110.36991 * 94.71427 * 14 5 4 41 41 H 0.96994 * 119.99777 * 93.54121 * 17 15 14 42 42 H 1.07997 * 119.73220 * 0.02562 * 21 20 18 43 43 H 1.08006 * 119.38475 * 180.30227 * 22 21 20 44 44 H 1.08001 * 119.90407 * 179.68033 * 23 22 21 45 45 H 1.07994 * 119.14437 * 180.02562 * 26 25 24 46 46 H 1.08002 * 120.06742 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.91040 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 6 2.0761 -0.7912 -1.2072 5 7 2.3717 -2.1532 -0.7389 6 6 2.8945 -3.1633 -1.5013 7 1 3.1250 -2.9904 -2.5422 8 6 3.1283 -4.4096 -0.9363 9 7 2.8469 -4.6204 0.3320 10 14 3.8422 -5.7873 -1.9762 11 1 5.1698 -5.3758 -2.4992 12 1 3.9941 -7.0078 -1.1440 13 1 2.9297 -6.0739 -3.1123 14 6 2.0126 -2.2509 0.6876 15 6 2.0790 -0.7954 1.2139 16 1 1.4401 -0.6663 2.0875 17 7 3.4595 -0.4081 1.5145 18 6 3.9887 -0.6838 2.7229 19 8 3.3203 -1.2536 3.5637 20 6 5.3794 -0.2942 3.0256 21 6 6.1883 0.2441 2.0360 22 6 7.4963 0.6185 2.3193 23 6 8.0231 0.4575 3.5650 24 6 7.2393 -0.0850 4.6002 25 7 7.7397 -0.2449 5.8296 26 6 7.0166 -0.7488 6.7997 27 6 5.6952 -1.1428 6.5995 28 6 5.1237 -1.0061 5.3655 29 6 5.9031 -0.4644 4.3300 30 1 -0.3633 0.4627 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0580 33 1 3.1610 1.4062 -0.0580 34 1 1.6751 1.9700 -0.8595 35 1 1.7691 1.9344 0.9176 36 1 2.9869 -0.3207 -1.5775 37 1 1.3264 -0.8255 -1.9977 38 1 3.0105 -5.4911 0.7268 39 1 2.7293 -2.8788 1.2170 40 1 1.0040 -2.6488 0.7986 41 1 3.9926 0.0466 0.8439 42 1 5.7968 0.3787 1.0385 43 1 8.1084 1.0403 1.5357 44 1 9.0439 0.7511 3.7601 45 1 7.4566 -0.8619 7.7794 46 1 5.1237 -1.5553 7.4178 47 1 4.1007 -1.3055 5.1916 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974878119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:06 Heat of formation + Delta-G solvation = 35.560458 kcal Electronic energy + Delta-G solvation = -29945.103398 eV Core-core repulsion = 26092.877643 eV Total energy + Delta-G solvation = -3852.225754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.12209 -40.99047 -39.42710 -37.90567 -35.72272 -34.65973 -34.31456 -32.61073 -31.55029 -31.39155 -29.64316 -28.04658 -27.41258 -25.85195 -25.16979 -24.43467 -24.02258 -22.25170 -21.50536 -20.16836 -19.23695 -18.71231 -18.55826 -17.87602 -17.33633 -17.14348 -16.64362 -16.11271 -15.85191 -15.66098 -15.59024 -15.22103 -15.14338 -14.82705 -14.64113 -14.24238 -14.06131 -13.91391 -13.73012 -13.62082 -13.08811 -13.03419 -12.98909 -12.87994 -12.70711 -12.62005 -12.56563 -12.33153 -12.18180 -11.78465 -11.76551 -11.50987 -11.44706 -11.36232 -11.21888 -10.76916 -10.28039 -10.03607 -9.82460 -9.31416 -8.84786 -7.75929 -5.20855 -0.88618 -0.20003 0.68910 1.43358 1.46145 1.52742 1.66835 2.09199 2.24102 2.48206 3.10557 3.30696 3.33723 3.51288 3.57039 3.69358 3.74813 3.81781 3.88021 3.96446 4.05988 4.07457 4.16390 4.40048 4.41602 4.44931 4.51481 4.70337 4.79427 4.80793 4.83502 4.87062 4.92529 5.00157 5.03946 5.09675 5.15041 5.20534 5.23868 5.31442 5.33571 5.34592 5.48379 5.52692 5.57874 5.68911 5.79565 5.83696 6.31438 6.53654 6.84414 7.08947 7.22265 7.79467 8.42806 9.24193 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.003908 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.386611 B = 7163.143992 C = 8232.259495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.137 3.863 5 N -0.617 5.617 6 C -0.233 4.233 7 H 0.085 0.915 8 C -0.067 4.067 9 N -0.949 5.949 10 Si 0.974 3.026 11 H -0.274 1.274 12 H -0.301 1.301 13 H -0.277 1.277 14 C 0.155 3.845 15 C 0.136 3.864 16 H 0.082 0.918 17 N -0.684 5.684 18 C 0.554 3.446 19 O -0.572 6.572 20 C -0.134 4.134 21 C -0.065 4.065 22 C -0.102 4.102 23 C -0.070 4.070 24 C 0.096 3.904 25 N -0.493 5.493 26 C 0.129 3.871 27 C -0.172 4.172 28 C -0.090 4.090 29 C -0.086 4.086 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.037 0.963 37 H 0.026 0.974 38 H 0.242 0.758 39 H 0.069 0.931 40 H -0.015 1.015 41 H 0.407 0.593 42 H 0.150 0.850 43 H 0.179 0.821 44 H 0.162 0.838 45 H 0.198 0.802 46 H 0.165 0.835 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.776 16.596 6.099 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.074 4.074 3 C -0.183 4.183 4 C 0.013 3.987 5 N -0.343 5.343 6 C -0.362 4.362 7 H 0.103 0.897 8 C -0.259 4.259 9 N -0.599 5.599 10 Si 0.803 3.197 11 H -0.200 1.200 12 H -0.228 1.228 13 H -0.203 1.203 14 C 0.029 3.971 15 C 0.030 3.970 16 H 0.100 0.900 17 N -0.334 5.334 18 C 0.343 3.657 19 O -0.454 6.454 20 C -0.138 4.138 21 C -0.084 4.084 22 C -0.121 4.121 23 C -0.088 4.088 24 C -0.025 4.025 25 N -0.202 5.202 26 C -0.043 4.043 27 C -0.192 4.192 28 C -0.115 4.115 29 C -0.089 4.089 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.003 0.997 41 H 0.245 0.755 42 H 0.168 0.832 43 H 0.196 0.804 44 H 0.180 0.820 45 H 0.214 0.786 46 H 0.182 0.818 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.233 16.296 6.684 19.041 hybrid contribution -0.806 -1.771 -0.790 2.100 sum 6.427 14.525 5.895 16.942 Atomic orbital electron populations 1.21692 0.92368 1.01254 1.03091 1.21832 0.96927 0.95983 0.92644 1.21712 1.00792 0.92592 1.03228 1.21665 0.97237 0.84749 0.95092 1.44674 1.73952 1.08286 1.07426 1.19406 1.33212 0.90077 0.93496 0.89700 1.25593 1.02899 1.00107 0.97330 1.70107 1.55203 1.22009 1.12537 0.85210 0.78647 0.78406 0.77443 1.20023 1.22770 1.20294 1.21935 0.96722 0.93197 0.85294 1.22234 0.82008 0.95567 0.97178 0.90022 1.45599 1.14597 1.58973 1.14203 1.18458 0.86794 0.78240 0.82245 1.90527 1.63181 1.43918 1.47788 1.19908 0.93911 1.05100 0.94907 1.21788 0.94471 0.93490 0.98607 1.21235 0.94488 0.98764 0.97601 1.21334 1.00615 0.95758 0.91123 1.19208 0.90737 0.99258 0.93304 1.68102 1.37290 1.14918 0.99844 1.23609 0.90754 0.90949 0.98970 1.22370 0.97314 1.01245 0.98248 1.22655 1.02438 0.93645 0.92810 1.18841 0.95377 1.00595 0.94042 0.91211 0.90076 0.94811 0.92203 0.90169 0.91515 0.94474 0.95587 0.94882 0.91341 0.99685 0.75467 0.83214 0.80403 0.82019 0.78558 0.81770 0.82647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 8.41 71.98 0.61 -2.89 16 2 C -0.07 -2.20 0.81 -50.99 -0.04 -2.25 16 3 C -0.13 -2.67 8.07 71.98 0.58 -2.09 16 4 C 0.14 5.15 6.41 86.73 0.56 5.70 16 5 N -0.62 -30.75 3.39 -691.98 -2.35 -33.10 16 6 C -0.23 -12.84 10.27 84.03 0.86 -11.97 16 7 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 8 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 9 N -0.95 -58.90 10.09 21.65 0.22 -58.68 16 10 Si 0.97 46.38 29.55 68.60 2.03 48.40 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 C 0.15 7.86 5.27 86.85 0.46 8.32 16 15 C 0.14 5.18 2.56 46.39 0.12 5.29 16 16 H 0.08 3.20 7.63 -2.38 -0.02 3.18 16 17 N -0.68 -23.53 4.64 -439.10 -2.04 -25.57 16 18 C 0.55 20.97 7.73 86.70 0.67 21.64 16 19 O -0.57 -25.43 13.15 -3.99 -0.05 -25.48 16 20 C -0.13 -4.32 5.90 -19.88 -0.12 -4.44 16 21 C -0.06 -1.56 9.51 22.55 0.21 -1.34 16 22 C -0.10 -1.91 9.92 21.97 0.22 -1.69 16 23 C -0.07 -1.52 9.96 22.40 0.22 -1.29 16 24 C 0.10 2.73 6.60 40.27 0.27 2.99 16 25 N -0.49 -13.22 10.34 -188.69 -1.95 -15.17 16 26 C 0.13 2.87 11.15 85.07 0.95 3.82 16 27 C -0.17 -4.20 10.03 22.17 0.22 -3.98 16 28 C -0.09 -2.92 9.29 22.45 0.21 -2.71 16 29 C -0.09 -2.79 5.76 -21.10 -0.12 -2.91 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.03 1.13 7.57 -2.39 -0.02 1.11 16 33 H 0.06 1.18 6.35 -2.39 -0.02 1.16 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.04 1.29 7.76 -2.39 -0.02 1.27 16 37 H 0.03 0.98 7.84 -2.39 -0.02 0.96 16 38 H 0.24 14.89 8.31 -92.71 -0.77 14.11 16 39 H 0.07 4.15 5.87 -2.38 -0.01 4.13 16 40 H -0.01 -0.82 7.80 -2.39 -0.02 -0.84 16 41 H 0.41 11.73 4.95 -92.71 -0.46 11.27 16 42 H 0.15 2.94 6.43 -2.91 -0.02 2.92 16 43 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16 44 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 45 H 0.20 2.58 8.06 -2.91 -0.02 2.56 16 46 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 47 H 0.16 5.78 4.96 -3.18 -0.02 5.76 16 Total: -1.00 -77.77 373.76 2.73 -75.04 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.54 Total: 27.73 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 6.34 Total: 6.83 kcal Atomic # 7 Polarization: -126.40 SS G_CDS: -6.12 Total: -132.52 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.05 Total: -25.48 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -77.77 2.73 -75.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974878119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.599 kcal (2) G-P(sol) polarization free energy of solvation -77.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds