Wall clock time and date at job start Tue Mar 31 2020 23:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 110.91518 * 2 1 4 4 C 1.54907 * 111.00577 * 236.09079 * 2 1 3 5 5 N 1.47426 * 104.83021 * 204.91596 * 4 2 1 6 6 C 1.36933 * 125.64591 * 204.16312 * 5 4 2 7 7 H 1.07999 * 120.00171 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99737 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00344 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00010 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46725 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47073 * 119.99395 * 10 8 6 13 13 H 1.48490 * 109.47063 * 239.99812 * 10 8 6 14 14 C 1.47021 * 108.70340 * 24.13693 * 5 4 2 15 15 C 1.54330 * 107.27124 * 358.93078 * 14 5 4 16 16 H 1.08992 * 110.72283 * 219.44582 * 15 14 5 17 17 N 1.46504 * 110.71195 * 96.35392 * 15 14 5 18 18 C 1.34773 * 119.99907 * 88.84728 * 17 15 14 19 19 O 1.21536 * 120.00377 * 359.97438 * 18 17 15 20 20 C 1.47952 * 119.99857 * 179.97438 * 18 17 15 21 21 N 1.32198 * 120.15584 * 354.14807 * 20 18 17 22 22 C 1.32031 * 122.67989 * 179.69722 * 21 20 18 23 23 C 1.36684 * 122.02686 * 0.58427 * 22 21 20 24 24 C 1.40532 * 118.84948 * 359.72013 * 23 22 21 25 25 C 1.40318 * 122.22017 * 179.97438 * 24 23 22 26 26 C 1.36203 * 119.45626 * 180.02562 * 25 24 23 27 27 C 1.39387 * 120.99881 * 359.97438 * 26 25 24 28 28 C 1.36264 * 121.07986 * 359.97438 * 27 26 25 29 29 C 1.40082 * 119.54006 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.47361 * 296.10233 * 1 2 3 31 31 H 1.09006 * 109.46740 * 56.10138 * 1 2 3 32 32 H 1.08998 * 109.47273 * 176.10050 * 1 2 3 33 33 H 1.09001 * 109.47158 * 183.90021 * 3 2 1 34 34 H 1.09004 * 109.47018 * 303.89546 * 3 2 1 35 35 H 1.09003 * 109.47358 * 63.89611 * 3 2 1 36 36 H 1.08998 * 110.36250 * 86.07840 * 4 2 1 37 37 H 1.08998 * 110.45699 * 323.80728 * 4 2 1 38 38 H 0.96993 * 120.00554 * 179.97438 * 9 8 6 39 39 H 1.09001 * 109.87836 * 239.51859 * 14 5 4 40 40 H 1.08997 * 109.88791 * 118.35618 * 14 5 4 41 41 H 0.96997 * 119.99756 * 268.83677 * 17 15 14 42 42 H 1.08004 * 118.98879 * 180.27734 * 22 21 20 43 43 H 1.08004 * 120.57645 * 179.69330 * 23 22 21 44 44 H 1.07997 * 120.27101 * 359.97438 * 25 24 23 45 45 H 1.07996 * 119.50122 * 179.97438 * 26 25 24 46 46 H 1.08000 * 119.45943 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.22672 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0854 -0.8068 -1.2002 5 7 3.4272 -1.2431 -0.7731 6 6 4.4645 -1.5655 -1.6068 7 1 4.3340 -1.5103 -2.6775 8 6 5.6838 -1.9632 -1.0759 9 7 5.8431 -2.0300 0.2290 10 14 7.0992 -2.4024 -2.2132 11 1 6.6663 -2.2461 -3.6251 12 1 8.2481 -1.5007 -1.9446 13 1 7.5079 -3.8098 -1.9741 14 6 3.4674 -1.2742 0.6963 15 6 2.0861 -0.8078 1.2024 16 1 2.1920 -0.1698 2.0797 17 7 1.2282 -1.9574 1.5004 18 6 1.2486 -2.5132 2.7280 19 8 1.9790 -2.0610 3.5878 20 6 0.3819 -3.6738 3.0291 21 7 -0.4965 -4.0961 2.1360 22 6 -1.2901 -5.1294 2.3498 23 6 -1.2659 -5.8315 3.5223 24 6 -0.3635 -5.4426 4.5270 25 6 -0.2795 -6.1124 5.7572 26 6 0.6157 -5.6872 6.6915 27 6 1.4491 -4.5978 6.4437 28 6 1.3945 -3.9253 5.2598 29 6 0.4870 -4.3345 4.2743 30 1 -0.3634 0.4522 0.9229 31 1 -0.3633 0.5732 -0.8531 32 1 -0.3634 -1.0253 -0.0699 33 1 3.1637 1.4026 -0.0699 34 1 1.6706 1.9732 -0.8531 35 1 1.7836 1.9300 0.9228 36 1 2.1561 -0.1722 -2.0836 37 1 1.4525 -1.6705 -1.4041 38 1 6.6950 -2.3083 0.6000 39 1 4.2426 -0.5997 1.0602 40 1 3.6650 -2.2893 1.0404 41 1 0.6455 -2.3184 0.8142 42 1 -1.9831 -5.4261 1.5764 43 1 -1.9292 -6.6702 3.6742 44 1 -0.9199 -6.9576 5.9617 45 1 0.6807 -6.2019 7.6387 46 1 2.1496 -4.2814 7.2025 47 1 2.0470 -3.0832 5.0823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974964220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:12 Heat of formation + Delta-G solvation = 54.091034 kcal Electronic energy + Delta-G solvation = -29708.157664 eV Core-core repulsion = 25856.735456 eV Total energy + Delta-G solvation = -3851.422208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.14550 -39.51901 -37.86016 -37.42846 -33.88667 -33.11865 -32.91239 -31.23347 -30.66316 -29.86210 -28.05764 -26.82139 -25.60249 -25.04129 -23.63423 -23.44207 -22.56994 -20.79135 -19.97479 -18.84257 -18.08473 -17.45113 -17.08228 -16.66143 -15.94854 -15.73818 -15.10916 -14.90777 -14.63802 -14.45937 -13.88575 -13.84277 -13.78250 -13.66197 -13.38584 -13.19310 -12.99048 -12.45282 -12.24011 -12.03210 -11.93929 -11.90627 -11.63746 -11.49844 -11.35069 -11.02736 -10.96274 -10.76626 -10.32891 -10.26765 -10.19224 -10.00672 -9.91776 -9.83171 -9.61328 -9.27960 -9.22264 -8.61440 -8.48790 -8.13346 -6.78697 -5.65856 -3.00158 0.01056 0.78909 1.67720 2.71427 3.27677 3.37006 3.42648 3.47835 3.50569 4.08350 4.16885 4.44517 4.53222 4.67023 4.69716 4.78939 4.97360 4.99836 5.13395 5.20209 5.31205 5.34912 5.37043 5.57734 5.60875 5.67359 5.72766 5.84878 5.91977 5.97486 6.00926 6.07516 6.19014 6.22725 6.25067 6.30663 6.40552 6.41301 6.52397 6.61766 6.66818 6.70517 6.72911 6.87037 6.99851 7.54481 7.62692 7.69606 7.85963 7.98022 8.29095 8.53327 9.25718 9.86477 10.52025 11.45085 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.003462 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.150267 B = 8085.278179 C = 9066.599389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.088 4.088 3 C -0.125 4.125 4 C 0.143 3.857 5 N -0.603 5.603 6 C -0.228 4.228 7 H 0.078 0.922 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.910 3.090 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.176 3.824 15 C 0.120 3.880 16 H 0.091 0.909 17 N -0.681 5.681 18 C 0.569 3.431 19 O -0.530 6.530 20 C 0.136 3.864 21 N -0.459 5.459 22 C 0.075 3.925 23 C -0.139 4.139 24 C -0.030 4.030 25 C -0.124 4.124 26 C -0.093 4.093 27 C -0.128 4.128 28 C -0.084 4.084 29 C -0.073 4.073 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.017 0.983 38 H 0.252 0.748 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.407 0.593 42 H 0.159 0.841 43 H 0.140 0.860 44 H 0.130 0.870 45 H 0.125 0.875 46 H 0.128 0.872 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.539 -4.478 9.729 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 C -0.183 4.183 4 C 0.016 3.984 5 N -0.329 5.329 6 C -0.356 4.356 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.219 1.219 14 C 0.051 3.949 15 C 0.015 3.985 16 H 0.109 0.891 17 N -0.331 5.331 18 C 0.354 3.646 19 O -0.408 6.408 20 C -0.016 4.016 21 N -0.171 5.171 22 C -0.071 4.071 23 C -0.159 4.159 24 C -0.035 4.035 25 C -0.142 4.142 26 C -0.112 4.112 27 C -0.146 4.146 28 C -0.103 4.103 29 C -0.076 4.076 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.035 0.965 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.244 0.756 42 H 0.176 0.824 43 H 0.158 0.842 44 H 0.148 0.852 45 H 0.143 0.857 46 H 0.146 0.854 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -15.921 -3.833 9.477 18.921 hybrid contribution 0.488 -1.224 -0.112 1.323 sum -15.433 -5.057 9.365 18.748 Atomic orbital electron populations 1.21693 0.94617 1.01406 1.01305 1.22005 0.94544 0.96002 0.96432 1.21599 1.02507 0.93652 1.00545 1.21647 0.87761 0.94620 0.94323 1.44438 1.07663 1.79005 1.01799 1.19074 0.89300 1.38274 0.88940 0.90418 1.24797 0.97806 1.01835 0.95936 1.69963 1.24091 1.53442 1.09134 0.86077 0.82568 0.77710 0.79602 1.20564 1.21786 1.21887 1.21527 0.89441 1.00506 0.83463 1.22602 0.92458 0.86075 0.97330 0.89113 1.45888 1.42832 1.32146 1.12226 1.17644 0.81768 0.82053 0.83168 1.90574 1.41294 1.62527 1.46365 1.21548 0.94418 0.95567 0.90108 1.67293 1.03992 1.13443 1.32340 1.22179 0.96986 0.91344 0.96555 1.22095 0.98816 1.00840 0.94146 1.18195 0.95404 0.94780 0.95131 1.20882 1.00274 1.00377 0.92701 1.21066 0.94820 0.96212 0.99101 1.21126 0.99561 0.95920 0.97978 1.22278 0.96406 1.00083 0.91529 1.18720 0.97800 0.96016 0.95091 0.92899 0.92624 0.92746 0.91162 0.92845 0.93321 0.94047 0.96546 0.93779 0.92633 0.93389 0.75580 0.82381 0.84196 0.85181 0.85675 0.85393 0.80715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 8.22 37.16 0.31 -1.50 16 2 C -0.09 -1.49 0.83 -152.36 -0.13 -1.62 16 3 C -0.13 -2.00 8.57 37.16 0.32 -1.69 16 4 C 0.14 2.88 6.14 -2.53 -0.02 2.86 16 5 N -0.60 -15.17 3.38 -170.07 -0.57 -15.75 16 6 C -0.23 -6.33 10.28 -15.06 -0.15 -6.49 16 7 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 9 N -0.92 -27.50 10.31 55.49 0.57 -26.93 16 10 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 C 0.18 4.35 4.80 -3.06 -0.01 4.33 16 15 C 0.12 2.32 2.54 -66.09 -0.17 2.15 16 16 H 0.09 1.77 7.52 -51.93 -0.39 1.38 16 17 N -0.68 -12.22 4.51 -52.94 -0.24 -12.46 16 18 C 0.57 10.48 7.78 -12.28 -0.10 10.39 16 19 O -0.53 -10.71 13.12 5.33 0.07 -10.64 16 20 C 0.14 2.21 6.81 -82.55 -0.56 1.65 16 21 N -0.46 -6.73 9.52 -9.81 -0.09 -6.83 16 22 C 0.08 0.86 11.06 -18.03 -0.20 0.66 16 23 C -0.14 -1.43 9.88 -39.28 -0.39 -1.82 16 24 C -0.03 -0.37 5.75 -106.82 -0.61 -0.98 16 25 C -0.12 -1.24 9.82 -39.53 -0.39 -1.63 16 26 C -0.09 -0.91 9.95 -39.89 -0.40 -1.30 16 27 C -0.13 -1.48 9.95 -39.86 -0.40 -1.88 16 28 C -0.08 -1.23 9.23 -39.60 -0.37 -1.60 16 29 C -0.07 -1.11 5.76 -106.60 -0.61 -1.72 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.73 6.44 -51.93 -0.33 0.39 16 33 H 0.07 1.32 7.91 -51.93 -0.41 0.91 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.82 8.05 -51.93 -0.42 0.40 16 37 H 0.02 0.34 7.99 -51.93 -0.41 -0.08 16 38 H 0.25 7.36 8.31 -40.82 -0.34 7.03 16 39 H 0.06 1.53 7.38 -51.93 -0.38 1.15 16 40 H 0.05 1.37 7.41 -51.93 -0.38 0.98 16 41 H 0.41 6.86 6.39 -40.82 -0.26 6.60 16 42 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 43 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 44 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 46 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 47 H 0.18 2.88 4.96 -52.49 -0.26 2.62 16 LS Contribution 377.63 15.07 5.69 5.69 Total: -1.00 -32.55 377.63 -10.18 -42.73 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.61 Total: 7.29 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -3.97 Total: -0.50 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.33 Total: -61.96 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.07 Total: -10.64 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.55 -10.18 -42.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974964220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.824 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds