Wall clock time and date at job start Tue Mar 31 2020 23:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 110.91518 * 2 1 4 4 C 1.54907 * 111.00577 * 236.09079 * 2 1 3 5 5 N 1.47426 * 104.83021 * 204.91596 * 4 2 1 6 6 C 1.36933 * 125.64591 * 204.16312 * 5 4 2 7 7 H 1.07999 * 120.00171 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99737 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00344 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00010 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46725 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47073 * 119.99395 * 10 8 6 13 13 H 1.48490 * 109.47063 * 239.99812 * 10 8 6 14 14 C 1.47021 * 108.70340 * 24.13693 * 5 4 2 15 15 C 1.54330 * 107.27124 * 358.93078 * 14 5 4 16 16 H 1.08992 * 110.72283 * 219.44582 * 15 14 5 17 17 N 1.46504 * 110.71195 * 96.35392 * 15 14 5 18 18 C 1.34773 * 119.99907 * 88.84728 * 17 15 14 19 19 O 1.21536 * 120.00377 * 359.97438 * 18 17 15 20 20 C 1.47952 * 119.99857 * 179.97438 * 18 17 15 21 21 N 1.32198 * 120.15584 * 354.14807 * 20 18 17 22 22 C 1.32031 * 122.67989 * 179.69722 * 21 20 18 23 23 C 1.36684 * 122.02686 * 0.58427 * 22 21 20 24 24 C 1.40532 * 118.84948 * 359.72013 * 23 22 21 25 25 C 1.40318 * 122.22017 * 179.97438 * 24 23 22 26 26 C 1.36203 * 119.45626 * 180.02562 * 25 24 23 27 27 C 1.39387 * 120.99881 * 359.97438 * 26 25 24 28 28 C 1.36264 * 121.07986 * 359.97438 * 27 26 25 29 29 C 1.40082 * 119.54006 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.47361 * 296.10233 * 1 2 3 31 31 H 1.09006 * 109.46740 * 56.10138 * 1 2 3 32 32 H 1.08998 * 109.47273 * 176.10050 * 1 2 3 33 33 H 1.09001 * 109.47158 * 183.90021 * 3 2 1 34 34 H 1.09004 * 109.47018 * 303.89546 * 3 2 1 35 35 H 1.09003 * 109.47358 * 63.89611 * 3 2 1 36 36 H 1.08998 * 110.36250 * 86.07840 * 4 2 1 37 37 H 1.08998 * 110.45699 * 323.80728 * 4 2 1 38 38 H 0.96993 * 120.00554 * 179.97438 * 9 8 6 39 39 H 1.09001 * 109.87836 * 239.51859 * 14 5 4 40 40 H 1.08997 * 109.88791 * 118.35618 * 14 5 4 41 41 H 0.96997 * 119.99756 * 268.83677 * 17 15 14 42 42 H 1.08004 * 118.98879 * 180.27734 * 22 21 20 43 43 H 1.08004 * 120.57645 * 179.69330 * 23 22 21 44 44 H 1.07997 * 120.27101 * 359.97438 * 25 24 23 45 45 H 1.07996 * 119.50122 * 179.97438 * 26 25 24 46 46 H 1.08000 * 119.45943 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.22672 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0854 -0.8068 -1.2002 5 7 3.4272 -1.2431 -0.7731 6 6 4.4645 -1.5655 -1.6068 7 1 4.3340 -1.5103 -2.6775 8 6 5.6838 -1.9632 -1.0759 9 7 5.8431 -2.0300 0.2290 10 14 7.0992 -2.4024 -2.2132 11 1 6.6663 -2.2461 -3.6251 12 1 8.2481 -1.5007 -1.9446 13 1 7.5079 -3.8098 -1.9741 14 6 3.4674 -1.2742 0.6963 15 6 2.0861 -0.8078 1.2024 16 1 2.1920 -0.1698 2.0797 17 7 1.2282 -1.9574 1.5004 18 6 1.2486 -2.5132 2.7280 19 8 1.9790 -2.0610 3.5878 20 6 0.3819 -3.6738 3.0291 21 7 -0.4965 -4.0961 2.1360 22 6 -1.2901 -5.1294 2.3498 23 6 -1.2659 -5.8315 3.5223 24 6 -0.3635 -5.4426 4.5270 25 6 -0.2795 -6.1124 5.7572 26 6 0.6157 -5.6872 6.6915 27 6 1.4491 -4.5978 6.4437 28 6 1.3945 -3.9253 5.2598 29 6 0.4870 -4.3345 4.2743 30 1 -0.3634 0.4522 0.9229 31 1 -0.3633 0.5732 -0.8531 32 1 -0.3634 -1.0253 -0.0699 33 1 3.1637 1.4026 -0.0699 34 1 1.6706 1.9732 -0.8531 35 1 1.7836 1.9300 0.9228 36 1 2.1561 -0.1722 -2.0836 37 1 1.4525 -1.6705 -1.4041 38 1 6.6950 -2.3083 0.6000 39 1 4.2426 -0.5997 1.0602 40 1 3.6650 -2.2893 1.0404 41 1 0.6455 -2.3184 0.8142 42 1 -1.9831 -5.4261 1.5764 43 1 -1.9292 -6.6702 3.6742 44 1 -0.9199 -6.9576 5.9617 45 1 0.6807 -6.2019 7.6387 46 1 2.1496 -4.2814 7.2025 47 1 2.0470 -3.0832 5.0823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974964220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:11 Heat of formation + Delta-G solvation = 33.577483 kcal Electronic energy + Delta-G solvation = -29709.047198 eV Core-core repulsion = 25856.735456 eV Total energy + Delta-G solvation = -3852.311742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.19543 -40.95241 -39.35826 -38.36563 -35.73385 -34.58832 -33.93867 -32.62032 -32.16355 -30.88175 -29.70912 -28.09830 -27.45210 -26.25454 -25.00726 -24.49575 -23.72015 -22.33099 -21.62791 -20.28046 -19.20649 -18.70755 -18.42112 -18.13266 -17.31145 -16.84528 -16.69538 -16.32935 -15.95376 -15.67272 -15.50301 -15.38345 -14.96504 -14.71618 -14.68264 -14.45776 -13.96413 -13.91201 -13.77739 -13.45707 -13.17160 -13.14334 -12.96760 -12.86065 -12.73365 -12.71660 -12.60546 -12.43790 -12.07952 -11.86877 -11.74409 -11.54707 -11.33532 -11.19315 -11.07774 -10.78009 -10.46654 -10.14860 -10.06642 -9.06221 -8.90220 -7.84211 -5.21025 -0.97671 -0.11786 0.70303 1.42989 1.44520 1.54949 1.62726 2.00125 2.23021 2.48302 3.08236 3.08369 3.34188 3.47543 3.60110 3.69145 3.72984 3.81542 3.90815 3.95067 4.05641 4.19997 4.27799 4.37571 4.42969 4.47605 4.50388 4.65338 4.74492 4.82277 4.85841 4.86771 4.94073 5.00752 5.08885 5.11120 5.14220 5.16377 5.29480 5.33463 5.39665 5.44932 5.51546 5.55492 5.63168 5.70000 5.73082 5.91150 6.16589 6.39262 6.77694 7.06941 7.14367 7.76624 8.41498 9.25526 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.003462 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.150267 B = 8085.278179 C = 9066.599389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C -0.122 4.122 4 C 0.138 3.862 5 N -0.620 5.620 6 C -0.236 4.236 7 H 0.088 0.912 8 C -0.070 4.070 9 N -0.954 5.954 10 Si 0.978 3.022 11 H -0.260 1.260 12 H -0.293 1.293 13 H -0.297 1.297 14 C 0.196 3.804 15 C 0.133 3.867 16 H 0.084 0.916 17 N -0.678 5.678 18 C 0.563 3.437 19 O -0.562 6.562 20 C 0.091 3.909 21 N -0.466 5.466 22 C 0.054 3.946 23 C -0.106 4.106 24 C -0.053 4.053 25 C -0.107 4.107 26 C -0.099 4.099 27 C -0.114 4.114 28 C -0.133 4.133 29 C -0.088 4.088 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.032 0.968 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.025 0.975 38 H 0.243 0.757 39 H 0.011 0.989 40 H -0.003 1.003 41 H 0.413 0.587 42 H 0.195 0.805 43 H 0.190 0.810 44 H 0.175 0.825 45 H 0.165 0.835 46 H 0.144 0.856 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.241 -6.489 9.613 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.075 4.075 3 C -0.180 4.180 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.365 4.365 7 H 0.106 0.894 8 C -0.262 4.262 9 N -0.604 5.604 10 Si 0.807 3.193 11 H -0.184 1.184 12 H -0.220 1.220 13 H -0.224 1.224 14 C 0.069 3.931 15 C 0.027 3.973 16 H 0.102 0.898 17 N -0.328 5.328 18 C 0.349 3.651 19 O -0.441 6.441 20 C -0.059 4.059 21 N -0.178 5.178 22 C -0.093 4.093 23 C -0.125 4.125 24 C -0.059 4.059 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.132 4.132 28 C -0.152 4.152 29 C -0.091 4.091 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.029 0.971 40 H 0.015 0.985 41 H 0.251 0.749 42 H 0.212 0.788 43 H 0.207 0.793 44 H 0.192 0.808 45 H 0.182 0.818 46 H 0.161 0.839 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.664 -5.825 9.330 22.531 hybrid contribution 1.556 -0.735 0.008 1.721 sum -18.108 -6.560 9.338 21.404 Atomic orbital electron populations 1.21643 0.91077 1.02316 1.03075 1.21986 0.97112 0.95491 0.92891 1.21586 1.00122 0.93457 1.02790 1.21883 0.85456 0.95370 0.95974 1.44689 1.09247 1.78911 1.01745 1.19533 0.90120 1.37058 0.89800 0.89447 1.25685 1.00626 1.02623 0.97304 1.70240 1.24061 1.54944 1.11140 0.85007 0.79058 0.76658 0.78622 1.18447 1.21993 1.22430 1.21068 0.91743 0.96545 0.83732 1.22237 0.90245 0.86753 0.98018 0.89795 1.45740 1.42585 1.31936 1.12539 1.18204 0.81640 0.82549 0.82715 1.90566 1.42661 1.63648 1.47234 1.21105 0.96503 0.96415 0.91852 1.67194 1.03816 1.14596 1.32171 1.22855 0.97247 0.90812 0.98402 1.22657 0.97070 1.00447 0.92306 1.18614 0.95710 0.94404 0.97135 1.21417 0.99693 1.00306 0.90999 1.21475 0.94046 0.95432 1.00854 1.21435 0.99389 0.95657 0.96750 1.22047 0.98117 1.01248 0.93773 1.18901 0.98545 0.97133 0.94520 0.91798 0.89996 0.92456 0.94876 0.90110 0.91459 0.92978 0.95706 0.94742 0.97056 0.98509 0.74874 0.78820 0.79269 0.80802 0.81788 0.83864 0.84083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 8.22 71.98 0.59 -2.50 16 2 C -0.07 -2.47 0.83 -50.79 -0.04 -2.52 16 3 C -0.12 -3.85 8.57 71.98 0.62 -3.23 16 4 C 0.14 5.57 6.14 86.85 0.53 6.11 16 5 N -0.62 -32.70 3.38 -691.99 -2.34 -35.04 16 6 C -0.24 -13.59 10.28 84.03 0.86 -12.72 16 7 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 8 C -0.07 -4.15 5.49 84.86 0.47 -3.69 16 9 N -0.95 -61.25 10.31 21.65 0.22 -61.03 16 10 Si 0.98 47.67 29.55 68.60 2.03 49.70 16 11 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 13 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 14 C 0.20 10.52 4.80 86.73 0.42 10.93 16 15 C 0.13 5.49 2.54 46.18 0.12 5.61 16 16 H 0.08 3.56 7.52 -2.39 -0.02 3.55 16 17 N -0.68 -25.93 4.51 -439.68 -1.98 -27.92 16 18 C 0.56 22.68 7.78 86.82 0.68 23.36 16 19 O -0.56 -25.52 13.12 -3.83 -0.05 -25.57 16 20 C 0.09 3.15 6.81 42.43 0.29 3.44 16 21 N -0.47 -13.62 9.52 -184.94 -1.76 -15.38 16 22 C 0.05 1.08 11.06 84.30 0.93 2.02 16 23 C -0.11 -1.75 9.88 22.47 0.22 -1.53 16 24 C -0.05 -1.20 5.75 -21.29 -0.12 -1.32 16 25 C -0.11 -1.68 9.82 22.30 0.22 -1.46 16 26 C -0.10 -1.63 9.95 22.07 0.22 -1.41 16 27 C -0.11 -2.64 9.95 22.09 0.22 -2.42 16 28 C -0.13 -4.21 9.23 22.26 0.21 -4.01 16 29 C -0.09 -2.75 5.76 -21.14 -0.12 -2.87 16 30 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.06 1.42 6.44 -2.39 -0.02 1.40 16 33 H 0.03 1.28 7.91 -2.39 -0.02 1.26 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.05 2.00 8.05 -2.39 -0.02 1.98 16 37 H 0.03 0.99 7.99 -2.39 -0.02 0.97 16 38 H 0.24 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.01 0.69 7.38 -2.39 -0.02 0.68 16 40 H 0.00 -0.21 7.41 -2.39 -0.02 -0.23 16 41 H 0.41 14.43 6.39 -92.71 -0.59 13.84 16 42 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 43 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 44 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 45 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 46 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 47 H 0.14 5.38 4.96 -3.00 -0.01 5.36 16 Total: -1.00 -80.78 377.63 2.82 -77.96 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.40 Total: 25.48 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 6.30 Total: 11.80 kcal Atomic # 7 Polarization: -133.51 SS G_CDS: -5.86 Total: -139.37 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.05 Total: -25.57 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -80.78 2.82 -77.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974964220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.540 kcal (2) G-P(sol) polarization free energy of solvation -80.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds