Wall clock time and date at job start Tue Mar 31 2020 23:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.91596 * 2 1 4 4 C 1.54907 * 111.00695 * 123.90603 * 2 1 3 5 5 N 1.47422 * 104.83596 * 155.08396 * 4 2 1 6 6 C 1.36940 * 125.64742 * 155.89336 * 5 4 2 7 7 H 1.08005 * 119.99981 * 359.97438 * 6 5 4 8 8 C 1.38808 * 119.99787 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00024 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00196 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.47146 * 89.99771 * 10 8 6 12 12 H 1.48492 * 109.47570 * 210.00114 * 10 8 6 13 13 H 1.48504 * 109.46951 * 330.00290 * 10 8 6 14 14 C 1.47016 * 108.70225 * 335.86703 * 5 4 2 15 15 C 1.54331 * 107.27173 * 1.06411 * 14 5 4 16 16 H 1.08996 * 110.71825 * 140.73084 * 15 14 5 17 17 N 1.46502 * 110.71677 * 263.82731 * 15 14 5 18 18 C 1.34772 * 120.00062 * 273.54596 * 17 15 14 19 19 O 1.21550 * 119.99994 * 0.02562 * 18 17 15 20 20 C 1.47945 * 120.00394 * 179.97438 * 18 17 15 21 21 N 1.32204 * 120.15778 * 354.69736 * 20 18 17 22 22 C 1.32027 * 122.68052 * 180.02562 * 21 20 18 23 23 C 1.36687 * 122.03115 * 359.97438 * 22 21 20 24 24 C 1.40527 * 118.84584 * 0.02562 * 23 22 21 25 25 C 1.40324 * 122.22300 * 180.02562 * 24 23 22 26 26 C 1.36205 * 119.45175 * 179.11931 * 25 24 23 27 27 C 1.39382 * 121.00287 * 0.88161 * 26 25 24 28 28 C 1.36265 * 121.07947 * 359.38644 * 27 26 25 29 29 C 1.40091 * 119.53678 * 0.02562 * 28 27 26 30 30 H 1.08998 * 109.47335 * 297.54864 * 1 2 3 31 31 H 1.08998 * 109.47115 * 57.55096 * 1 2 3 32 32 H 1.09003 * 109.47269 * 177.54966 * 1 2 3 33 33 H 1.09005 * 109.47041 * 182.44905 * 3 2 1 34 34 H 1.09001 * 109.47281 * 302.44735 * 3 2 1 35 35 H 1.08998 * 109.47020 * 62.44755 * 3 2 1 36 36 H 1.09003 * 110.36889 * 36.23854 * 4 2 1 37 37 H 1.09005 * 110.36488 * 273.92487 * 4 2 1 38 38 H 0.97003 * 120.00331 * 180.02562 * 9 8 6 39 39 H 1.08998 * 109.88124 * 120.47532 * 14 5 4 40 40 H 1.08994 * 109.88513 * 241.48871 * 14 5 4 41 41 H 0.97003 * 120.00032 * 93.54534 * 17 15 14 42 42 H 1.08002 * 118.97838 * 180.02562 * 22 21 20 43 43 H 1.08001 * 120.57589 * 180.02562 * 23 22 21 44 44 H 1.08007 * 120.26764 * 359.95056 * 25 24 23 45 45 H 1.08001 * 119.50089 * 180.29188 * 26 25 24 46 46 H 1.07992 * 119.46586 * 179.41374 * 27 26 25 47 47 H 1.07992 * 120.23186 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0853 -0.8067 1.2002 5 7 3.4272 -1.2431 0.7732 6 6 4.4641 -1.5665 1.6071 7 1 4.3335 -1.5113 2.6778 8 6 5.6835 -1.9642 1.0763 9 7 5.8428 -2.0309 -0.2285 10 14 7.0983 -2.4047 2.2137 11 1 7.0453 -3.8545 2.5311 12 1 8.3868 -2.0910 1.5455 13 1 6.9874 -1.6189 3.4689 14 6 3.4674 -1.2742 -0.6960 15 6 2.0861 -0.8079 -1.2023 16 1 2.1920 -0.1724 -2.0815 17 7 1.2268 -1.9574 -1.4962 18 6 1.2806 -2.5468 -2.7070 19 8 2.0425 -2.1250 -3.5550 20 6 0.4133 -3.7080 -3.0038 21 7 -0.3386 -4.2356 -2.0530 22 6 -1.1300 -5.2715 -2.2623 23 6 -1.2274 -5.8739 -3.4854 24 6 -0.4600 -5.3731 -4.5508 25 6 -0.5055 -5.9364 -5.8352 26 6 0.2489 -5.3944 -6.8313 27 6 1.0786 -4.3008 -6.5896 28 6 1.1512 -3.7327 -5.3531 29 6 0.3805 -4.2554 -4.3066 30 1 -0.3634 0.4753 0.9111 31 1 -0.3633 0.5514 -0.8672 32 1 -0.3634 -1.0267 -0.0439 33 1 3.1650 1.4020 -0.0439 34 1 1.6909 1.9654 -0.8672 35 1 1.7619 1.9382 0.9111 36 1 1.4519 -1.6704 1.4024 37 1 2.1560 -0.1721 2.0836 38 1 6.6948 -2.3092 -0.5996 39 1 4.2425 -0.5998 -1.0600 40 1 3.6677 -2.2888 -1.0400 41 1 0.6190 -2.2943 -0.8194 42 1 -1.7191 -5.6542 -1.4419 43 1 -1.8829 -6.7199 -3.6305 44 1 -1.1438 -6.7844 -6.0355 45 1 0.2109 -5.8244 -7.8213 46 1 1.6733 -3.8968 -7.3954 47 1 1.7984 -2.8855 -5.1812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974964222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:16 Heat of formation + Delta-G solvation = 55.498262 kcal Electronic energy + Delta-G solvation = -29706.479172 eV Core-core repulsion = 25855.117986 eV Total energy + Delta-G solvation = -3851.361186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.14687 -39.52453 -37.85375 -37.43028 -33.88880 -33.11108 -32.91148 -31.23569 -30.65905 -29.86388 -28.06120 -26.82733 -25.59679 -25.03864 -23.63897 -23.44110 -22.57331 -20.80570 -19.94810 -18.84455 -18.08277 -17.45085 -17.08790 -16.64777 -15.96206 -15.75692 -15.09320 -14.91371 -14.62113 -14.45808 -13.87816 -13.84292 -13.79886 -13.70349 -13.34724 -13.18282 -12.99574 -12.41416 -12.24359 -12.01793 -11.96979 -11.91891 -11.64020 -11.50025 -11.36322 -11.04127 -10.96591 -10.74181 -10.33871 -10.25129 -10.19468 -10.00424 -9.90296 -9.83778 -9.60581 -9.27893 -9.22620 -8.59537 -8.48640 -8.13709 -6.77507 -5.64501 -2.98884 0.00922 0.78584 1.67182 2.71650 3.28149 3.36909 3.43696 3.48329 3.50645 4.07376 4.18227 4.44250 4.54194 4.66752 4.69446 4.78488 4.97266 4.99420 5.12711 5.19847 5.30771 5.34577 5.36127 5.58186 5.60301 5.67284 5.72355 5.84388 5.91481 5.95491 6.00392 6.07462 6.19048 6.21964 6.24528 6.29371 6.39848 6.41341 6.52130 6.61666 6.66954 6.70225 6.72679 6.86741 6.99565 7.55046 7.63615 7.70560 7.87182 7.98600 8.30509 8.53942 9.26807 9.87638 10.53205 11.46280 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012261 B = 0.003398 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.137680 B = 8238.800153 C = 9067.907597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 C -0.125 4.125 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.228 4.228 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.910 3.090 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.176 3.824 15 C 0.121 3.879 16 H 0.090 0.910 17 N -0.682 5.682 18 C 0.569 3.431 19 O -0.529 6.529 20 C 0.136 3.864 21 N -0.458 5.458 22 C 0.076 3.924 23 C -0.139 4.139 24 C -0.030 4.030 25 C -0.124 4.124 26 C -0.093 4.093 27 C -0.128 4.128 28 C -0.085 4.085 29 C -0.074 4.074 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.017 0.983 37 H 0.041 0.959 38 H 0.252 0.748 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.407 0.593 42 H 0.159 0.841 43 H 0.140 0.860 44 H 0.130 0.870 45 H 0.125 0.875 46 H 0.128 0.872 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.107 -3.975 -9.950 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.090 4.090 3 C -0.182 4.182 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.741 3.259 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.051 3.949 15 C 0.016 3.984 16 H 0.108 0.892 17 N -0.332 5.332 18 C 0.353 3.647 19 O -0.406 6.406 20 C -0.016 4.016 21 N -0.170 5.170 22 C -0.070 4.070 23 C -0.159 4.159 24 C -0.035 4.035 25 C -0.142 4.142 26 C -0.112 4.112 27 C -0.146 4.146 28 C -0.103 4.103 29 C -0.077 4.077 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.035 0.965 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.244 0.756 42 H 0.176 0.824 43 H 0.158 0.842 44 H 0.148 0.852 45 H 0.143 0.857 46 H 0.146 0.854 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -16.361 -3.426 -9.656 19.305 hybrid contribution 0.407 -1.177 0.092 1.248 sum -15.954 -4.602 -9.564 19.162 Atomic orbital electron populations 1.21703 0.94688 1.01335 1.01379 1.22001 0.94491 0.96031 0.96464 1.21591 1.02419 0.93637 1.00596 1.21644 0.87787 0.94633 0.94263 1.44423 1.07662 1.79000 1.01797 1.19022 0.89321 1.38412 0.88898 0.90489 1.24796 0.97804 1.01824 0.95936 1.69957 1.24189 1.53320 1.09130 0.86151 0.82107 0.78146 0.79527 1.21745 1.21728 1.20743 1.21519 0.89391 1.00573 0.83433 1.22588 0.92497 0.86014 0.97292 0.89210 1.45931 1.41610 1.31910 1.13769 1.17648 0.82030 0.81969 0.83023 1.90581 1.39476 1.64170 1.46399 1.21553 0.95047 0.95663 0.89383 1.67303 1.04736 1.10552 1.34401 1.22188 0.96149 0.92052 0.96623 1.22096 0.99542 1.00819 0.93467 1.18196 0.95843 0.94652 0.94820 1.20887 1.01038 1.00599 0.91669 1.21064 0.95329 0.95671 0.99180 1.21120 0.99220 0.96550 0.97724 1.22278 0.96540 1.00358 0.91164 1.18725 0.98299 0.96171 0.94465 0.92547 0.92867 0.92804 0.91224 0.93376 0.92776 0.96544 0.94042 0.93737 0.92685 0.93316 0.75557 0.82370 0.84190 0.85180 0.85685 0.85415 0.80732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 8.35 37.16 0.31 -1.49 16 2 C -0.09 -1.49 0.83 -152.36 -0.13 -1.62 16 3 C -0.12 -1.99 8.61 37.16 0.32 -1.67 16 4 C 0.14 2.89 6.14 -2.53 -0.02 2.88 16 5 N -0.60 -15.24 3.38 -170.08 -0.58 -15.81 16 6 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 7 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -27.62 10.31 55.49 0.57 -27.05 16 10 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 14 C 0.18 4.37 4.73 -3.06 -0.01 4.36 16 15 C 0.12 2.33 2.51 -66.09 -0.17 2.17 16 16 H 0.09 1.74 7.60 -51.93 -0.39 1.35 16 17 N -0.68 -12.25 4.53 -52.94 -0.24 -12.49 16 18 C 0.57 10.52 7.77 -12.29 -0.10 10.43 16 19 O -0.53 -10.75 13.17 5.32 0.07 -10.68 16 20 C 0.14 2.22 6.81 -82.55 -0.56 1.66 16 21 N -0.46 -6.82 9.52 -9.81 -0.09 -6.91 16 22 C 0.08 0.88 11.06 -18.03 -0.20 0.68 16 23 C -0.14 -1.44 9.88 -39.28 -0.39 -1.83 16 24 C -0.03 -0.37 5.75 -106.82 -0.61 -0.98 16 25 C -0.12 -1.23 9.82 -39.53 -0.39 -1.62 16 26 C -0.09 -0.90 9.95 -39.89 -0.40 -1.30 16 27 C -0.13 -1.46 9.95 -39.87 -0.40 -1.85 16 28 C -0.08 -1.22 9.23 -39.60 -0.37 -1.59 16 29 C -0.07 -1.11 5.76 -106.59 -0.61 -1.72 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.71 6.17 -51.93 -0.32 0.39 16 33 H 0.07 1.30 7.81 -51.93 -0.41 0.90 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.02 0.34 8.04 -51.93 -0.42 -0.08 16 37 H 0.04 0.82 8.05 -51.93 -0.42 0.40 16 38 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.06 1.53 7.38 -51.93 -0.38 1.14 16 40 H 0.05 1.40 7.40 -51.93 -0.38 1.02 16 41 H 0.41 6.84 6.19 -40.82 -0.25 6.58 16 42 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 45 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 47 H 0.18 2.83 4.96 -52.50 -0.26 2.57 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -32.80 377.31 -10.16 -42.96 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.59 Total: 7.17 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -3.96 Total: -0.33 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.34 Total: -62.26 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.80 -10.16 -42.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974964222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.458 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds