Wall clock time and date at job start Tue Mar 31 2020 23:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.91596 * 2 1 4 4 C 1.54907 * 111.00695 * 123.90603 * 2 1 3 5 5 N 1.47422 * 104.83596 * 155.08396 * 4 2 1 6 6 C 1.36940 * 125.64742 * 155.89336 * 5 4 2 7 7 H 1.08005 * 119.99981 * 359.97438 * 6 5 4 8 8 C 1.38808 * 119.99787 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00024 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00196 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.47146 * 89.99771 * 10 8 6 12 12 H 1.48492 * 109.47570 * 210.00114 * 10 8 6 13 13 H 1.48504 * 109.46951 * 330.00290 * 10 8 6 14 14 C 1.47016 * 108.70225 * 335.86703 * 5 4 2 15 15 C 1.54331 * 107.27173 * 1.06411 * 14 5 4 16 16 H 1.08996 * 110.71825 * 140.73084 * 15 14 5 17 17 N 1.46502 * 110.71677 * 263.82731 * 15 14 5 18 18 C 1.34772 * 120.00062 * 273.54596 * 17 15 14 19 19 O 1.21550 * 119.99994 * 0.02562 * 18 17 15 20 20 C 1.47945 * 120.00394 * 179.97438 * 18 17 15 21 21 N 1.32204 * 120.15778 * 354.69736 * 20 18 17 22 22 C 1.32027 * 122.68052 * 180.02562 * 21 20 18 23 23 C 1.36687 * 122.03115 * 359.97438 * 22 21 20 24 24 C 1.40527 * 118.84584 * 0.02562 * 23 22 21 25 25 C 1.40324 * 122.22300 * 180.02562 * 24 23 22 26 26 C 1.36205 * 119.45175 * 179.11931 * 25 24 23 27 27 C 1.39382 * 121.00287 * 0.88161 * 26 25 24 28 28 C 1.36265 * 121.07947 * 359.38644 * 27 26 25 29 29 C 1.40091 * 119.53678 * 0.02562 * 28 27 26 30 30 H 1.08998 * 109.47335 * 297.54864 * 1 2 3 31 31 H 1.08998 * 109.47115 * 57.55096 * 1 2 3 32 32 H 1.09003 * 109.47269 * 177.54966 * 1 2 3 33 33 H 1.09005 * 109.47041 * 182.44905 * 3 2 1 34 34 H 1.09001 * 109.47281 * 302.44735 * 3 2 1 35 35 H 1.08998 * 109.47020 * 62.44755 * 3 2 1 36 36 H 1.09003 * 110.36889 * 36.23854 * 4 2 1 37 37 H 1.09005 * 110.36488 * 273.92487 * 4 2 1 38 38 H 0.97003 * 120.00331 * 180.02562 * 9 8 6 39 39 H 1.08998 * 109.88124 * 120.47532 * 14 5 4 40 40 H 1.08994 * 109.88513 * 241.48871 * 14 5 4 41 41 H 0.97003 * 120.00032 * 93.54534 * 17 15 14 42 42 H 1.08002 * 118.97838 * 180.02562 * 22 21 20 43 43 H 1.08001 * 120.57589 * 180.02562 * 23 22 21 44 44 H 1.08007 * 120.26764 * 359.95056 * 25 24 23 45 45 H 1.08001 * 119.50089 * 180.29188 * 26 25 24 46 46 H 1.07992 * 119.46586 * 179.41374 * 27 26 25 47 47 H 1.07992 * 120.23186 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0853 -0.8067 1.2002 5 7 3.4272 -1.2431 0.7732 6 6 4.4641 -1.5665 1.6071 7 1 4.3335 -1.5113 2.6778 8 6 5.6835 -1.9642 1.0763 9 7 5.8428 -2.0309 -0.2285 10 14 7.0983 -2.4047 2.2137 11 1 7.0453 -3.8545 2.5311 12 1 8.3868 -2.0910 1.5455 13 1 6.9874 -1.6189 3.4689 14 6 3.4674 -1.2742 -0.6960 15 6 2.0861 -0.8079 -1.2023 16 1 2.1920 -0.1724 -2.0815 17 7 1.2268 -1.9574 -1.4962 18 6 1.2806 -2.5468 -2.7070 19 8 2.0425 -2.1250 -3.5550 20 6 0.4133 -3.7080 -3.0038 21 7 -0.3386 -4.2356 -2.0530 22 6 -1.1300 -5.2715 -2.2623 23 6 -1.2274 -5.8739 -3.4854 24 6 -0.4600 -5.3731 -4.5508 25 6 -0.5055 -5.9364 -5.8352 26 6 0.2489 -5.3944 -6.8313 27 6 1.0786 -4.3008 -6.5896 28 6 1.1512 -3.7327 -5.3531 29 6 0.3805 -4.2554 -4.3066 30 1 -0.3634 0.4753 0.9111 31 1 -0.3633 0.5514 -0.8672 32 1 -0.3634 -1.0267 -0.0439 33 1 3.1650 1.4020 -0.0439 34 1 1.6909 1.9654 -0.8672 35 1 1.7619 1.9382 0.9111 36 1 1.4519 -1.6704 1.4024 37 1 2.1560 -0.1721 2.0836 38 1 6.6948 -2.3092 -0.5996 39 1 4.2425 -0.5998 -1.0600 40 1 3.6677 -2.2888 -1.0400 41 1 0.6190 -2.2943 -0.8194 42 1 -1.7191 -5.6542 -1.4419 43 1 -1.8829 -6.7199 -3.6305 44 1 -1.1438 -6.7844 -6.0355 45 1 0.2109 -5.8244 -7.8213 46 1 1.6733 -3.8968 -7.3954 47 1 1.7984 -2.8855 -5.1812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974964222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:15 Heat of formation + Delta-G solvation = 34.693718 kcal Electronic energy + Delta-G solvation = -29707.381325 eV Core-core repulsion = 25855.117986 eV Total energy + Delta-G solvation = -3852.263339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.19704 -40.95923 -39.35238 -38.36574 -35.74105 -34.58048 -33.93839 -32.62139 -32.16235 -30.87832 -29.71528 -28.10001 -27.45113 -26.25381 -25.01055 -24.49529 -23.71729 -22.34869 -21.60560 -20.28046 -19.20460 -18.70293 -18.41510 -18.13417 -17.33505 -16.87238 -16.69098 -16.27200 -15.97991 -15.67527 -15.50913 -15.37373 -14.99005 -14.72521 -14.67908 -14.38982 -13.99363 -13.90494 -13.74342 -13.46187 -13.17596 -13.14208 -12.99820 -12.87467 -12.72905 -12.69271 -12.59739 -12.43491 -12.13662 -11.85853 -11.73126 -11.53346 -11.33741 -11.19396 -11.07853 -10.76602 -10.46880 -10.14784 -10.06156 -9.06209 -8.89833 -7.83715 -5.20651 -0.97588 -0.11684 0.70494 1.42719 1.45379 1.54226 1.62889 2.00899 2.22604 2.48584 3.05424 3.11519 3.34363 3.47575 3.60084 3.68969 3.73428 3.81631 3.90866 3.94783 4.04868 4.20309 4.28086 4.37376 4.42891 4.47813 4.50155 4.65140 4.74475 4.81844 4.85473 4.87030 4.93946 5.00619 5.08648 5.10866 5.14119 5.16797 5.29481 5.33260 5.39980 5.44810 5.51725 5.55130 5.63225 5.70436 5.73717 5.91541 6.16939 6.39298 6.78006 7.07069 7.14730 7.77021 8.41875 9.25688 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012261 B = 0.003398 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.137680 B = 8238.800153 C = 9067.907597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.121 4.121 4 C 0.138 3.862 5 N -0.620 5.620 6 C -0.237 4.237 7 H 0.088 0.912 8 C -0.070 4.070 9 N -0.954 5.954 10 Si 0.979 3.021 11 H -0.289 1.289 12 H -0.297 1.297 13 H -0.263 1.263 14 C 0.196 3.804 15 C 0.134 3.866 16 H 0.084 0.916 17 N -0.679 5.679 18 C 0.562 3.438 19 O -0.561 6.561 20 C 0.091 3.909 21 N -0.468 5.468 22 C 0.053 3.947 23 C -0.105 4.105 24 C -0.053 4.053 25 C -0.107 4.107 26 C -0.099 4.099 27 C -0.114 4.114 28 C -0.132 4.132 29 C -0.087 4.087 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.024 0.976 37 H 0.052 0.948 38 H 0.243 0.757 39 H 0.011 0.989 40 H -0.004 1.004 41 H 0.413 0.587 42 H 0.194 0.806 43 H 0.190 0.810 44 H 0.174 0.826 45 H 0.165 0.835 46 H 0.145 0.855 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.822 -5.861 -9.961 23.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.075 4.075 3 C -0.179 4.179 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.366 4.366 7 H 0.105 0.895 8 C -0.263 4.263 9 N -0.603 5.603 10 Si 0.807 3.193 11 H -0.216 1.216 12 H -0.224 1.224 13 H -0.188 1.188 14 C 0.069 3.931 15 C 0.028 3.972 16 H 0.102 0.898 17 N -0.329 5.329 18 C 0.348 3.652 19 O -0.441 6.441 20 C -0.059 4.059 21 N -0.180 5.180 22 C -0.094 4.094 23 C -0.125 4.125 24 C -0.059 4.059 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.132 4.132 28 C -0.151 4.151 29 C -0.091 4.091 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.029 0.971 40 H 0.014 0.986 41 H 0.252 0.748 42 H 0.210 0.790 43 H 0.207 0.793 44 H 0.192 0.808 45 H 0.182 0.818 46 H 0.162 0.838 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.121 -5.291 -9.634 22.927 hybrid contribution 1.474 -0.724 0.007 1.642 sum -18.647 -6.015 -9.627 21.830 Atomic orbital electron populations 1.21658 0.91085 1.02128 1.03353 1.21982 0.97109 0.95516 0.92851 1.21581 0.99995 0.93412 1.02916 1.21886 0.85455 0.95381 0.95979 1.44679 1.09263 1.78906 1.01747 1.19495 0.90148 1.37199 0.89789 0.89468 1.25694 1.00653 1.02609 0.97316 1.70242 1.24099 1.54842 1.11148 0.85070 0.78345 0.77785 0.78103 1.21620 1.22388 1.18758 1.21057 0.91756 0.96532 0.83706 1.22224 0.90226 0.86705 0.98032 0.89786 1.45788 1.41358 1.31687 1.14075 1.18215 0.81903 0.82484 0.82564 1.90572 1.40874 1.65315 1.47299 1.21111 0.97355 0.96523 0.90871 1.67195 1.04767 1.11646 1.34396 1.22840 0.96293 0.91576 0.98653 1.22652 0.97581 1.00375 0.91857 1.18614 0.96073 0.94238 0.96936 1.21418 1.00225 1.00681 0.90108 1.21479 0.94404 0.94741 1.01151 1.21437 0.98655 0.96406 0.96668 1.22056 0.98542 1.01413 0.93118 1.18903 0.99058 0.97307 0.93792 0.90004 0.91442 0.92625 0.94965 0.91117 0.90357 0.95778 0.92944 0.94771 0.97110 0.98571 0.74812 0.78958 0.79280 0.80843 0.81773 0.83767 0.83957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 8.35 71.98 0.60 -2.49 16 2 C -0.07 -2.46 0.83 -50.79 -0.04 -2.51 16 3 C -0.12 -3.82 8.61 71.98 0.62 -3.20 16 4 C 0.14 5.59 6.14 86.85 0.53 6.12 16 5 N -0.62 -32.88 3.38 -692.00 -2.34 -35.22 16 6 C -0.24 -13.72 10.28 84.03 0.86 -12.86 16 7 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 8 C -0.07 -4.19 5.49 84.86 0.47 -3.72 16 9 N -0.95 -61.54 10.31 21.65 0.22 -61.31 16 10 Si 0.98 47.86 29.55 68.60 2.03 49.88 16 11 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 12 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 13 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 14 C 0.20 10.59 4.73 86.73 0.41 11.01 16 15 C 0.13 5.52 2.51 46.18 0.12 5.64 16 16 H 0.08 3.55 7.60 -2.39 -0.02 3.53 16 17 N -0.68 -26.01 4.53 -439.67 -1.99 -28.01 16 18 C 0.56 22.79 7.77 86.82 0.67 23.46 16 19 O -0.56 -25.67 13.17 -3.87 -0.05 -25.72 16 20 C 0.09 3.17 6.81 42.43 0.29 3.46 16 21 N -0.47 -13.99 9.52 -184.95 -1.76 -15.75 16 22 C 0.05 1.10 11.06 84.30 0.93 2.03 16 23 C -0.11 -1.77 9.88 22.47 0.22 -1.54 16 24 C -0.05 -1.19 5.75 -21.29 -0.12 -1.31 16 25 C -0.11 -1.66 9.82 22.30 0.22 -1.44 16 26 C -0.10 -1.58 9.95 22.07 0.22 -1.36 16 27 C -0.11 -2.55 9.95 22.09 0.22 -2.33 16 28 C -0.13 -4.11 9.23 22.26 0.21 -3.91 16 29 C -0.09 -2.72 5.76 -21.14 -0.12 -2.84 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.38 6.17 -2.39 -0.01 1.36 16 33 H 0.03 1.24 7.81 -2.38 -0.02 1.22 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.02 0.96 8.04 -2.39 -0.02 0.94 16 37 H 0.05 2.02 8.05 -2.38 -0.02 2.00 16 38 H 0.24 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.01 0.66 7.38 -2.39 -0.02 0.65 16 40 H 0.00 -0.25 7.40 -2.39 -0.02 -0.27 16 41 H 0.41 14.42 6.19 -92.71 -0.57 13.84 16 42 H 0.19 2.49 8.06 -2.91 -0.02 2.47 16 43 H 0.19 1.27 8.06 -2.91 -0.02 1.24 16 44 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 45 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 46 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 47 H 0.14 5.30 4.96 -3.01 -0.01 5.29 16 Total: -1.00 -81.46 377.31 2.83 -78.63 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.42 Total: 25.28 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 6.30 Total: 12.22 kcal Atomic # 7 Polarization: -134.41 SS G_CDS: -5.87 Total: -140.28 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.05 Total: -25.72 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.88 kcal Total: -81.46 2.83 -78.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974964222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.321 kcal (2) G-P(sol) polarization free energy of solvation -81.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds