Wall clock time and date at job start Tue Mar 31 2020 23:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 110.91340 * 2 1 4 4 C 1.55394 * 111.18585 * 235.94675 * 2 1 3 5 5 N 1.47422 * 104.87226 * 204.97832 * 4 2 1 6 6 C 1.36934 * 125.64962 * 204.16877 * 5 4 2 7 7 H 1.08005 * 119.99795 * 354.83861 * 6 5 4 8 8 C 1.38817 * 120.00307 * 174.83297 * 6 5 4 9 9 N 1.31613 * 119.99595 * 7.06937 * 8 6 5 10 10 Si 1.86798 * 119.99926 * 187.06203 * 8 6 5 11 11 H 1.48497 * 109.46668 * 94.99479 * 10 8 6 12 12 H 1.48506 * 109.46790 * 214.98935 * 10 8 6 13 13 H 1.48494 * 109.47577 * 334.99043 * 10 8 6 14 14 C 1.47023 * 108.70386 * 24.13062 * 5 4 2 15 15 C 1.54324 * 107.27126 * 358.94388 * 14 5 4 16 16 H 1.09001 * 110.72050 * 219.26495 * 15 14 5 17 17 N 1.46499 * 110.72277 * 96.16866 * 15 14 5 18 18 C 1.34777 * 120.00027 * 88.84192 * 17 15 14 19 19 O 1.21560 * 119.99945 * 359.97438 * 18 17 15 20 20 C 1.47765 * 120.00053 * 179.97438 * 18 17 15 21 21 C 1.40636 * 119.80582 * 0.21991 * 20 18 17 22 22 C 1.35692 * 120.92326 * 180.20814 * 21 20 18 23 23 C 1.40760 * 120.11711 * 359.54828 * 22 21 20 24 24 N 1.33644 * 120.84805 * 180.28195 * 23 22 21 25 25 C 1.31118 * 121.39492 * 179.97438 * 24 23 22 26 26 C 1.39313 * 121.77889 * 359.97438 * 25 24 23 27 27 C 1.36584 * 119.89592 * 0.02562 * 26 25 24 28 28 C 1.40891 * 118.15581 * 359.97438 * 27 26 25 29 29 C 1.38544 * 119.80393 * 179.97438 * 20 18 17 30 30 H 1.09001 * 109.47074 * 296.09397 * 1 2 3 31 31 H 1.08997 * 109.47507 * 56.09246 * 1 2 3 32 32 H 1.09001 * 109.46917 * 176.09687 * 1 2 3 33 33 H 1.09001 * 109.46793 * 183.90220 * 3 2 1 34 34 H 1.08991 * 109.47555 * 303.90595 * 3 2 1 35 35 H 1.09000 * 109.46677 * 63.90925 * 3 2 1 36 36 H 1.08999 * 110.34277 * 86.12648 * 4 2 1 37 37 H 1.08998 * 110.44327 * 323.88003 * 4 2 1 38 38 H 0.97005 * 120.00033 * 179.97438 * 9 8 6 39 39 H 1.08997 * 109.88398 * 239.52427 * 14 5 4 40 40 H 1.08997 * 109.88347 * 118.36074 * 14 5 4 41 41 H 0.97001 * 119.99658 * 268.84448 * 17 15 14 42 42 H 1.08008 * 119.53750 * 0.02562 * 21 20 18 43 43 H 1.08008 * 119.94253 * 179.81777 * 22 21 20 44 44 H 1.08004 * 119.10918 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.05004 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.91829 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.30378 * 0.05069 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0916 -0.8113 -1.2004 5 7 3.4326 -1.2460 -0.7691 6 6 4.4724 -1.5692 -1.5996 7 1 4.3212 -1.5964 -2.6686 8 6 5.7207 -1.8617 -1.0674 9 7 5.8726 -1.9652 0.2358 10 14 7.1847 -2.1086 -2.2011 11 1 7.9315 -0.8316 -2.3302 12 1 8.0791 -3.1500 -1.6347 13 1 6.7073 -2.5404 -3.5393 14 6 3.4691 -1.2742 0.7004 15 6 2.0862 -0.8080 1.2021 16 1 2.1893 -0.1708 2.0804 17 7 1.2269 -1.9575 1.4960 18 6 1.2428 -2.5145 2.7232 19 8 1.9706 -2.0633 3.5860 20 6 0.3757 -3.6736 3.0199 21 6 -0.4613 -4.1952 2.0173 22 6 -1.2698 -5.2562 2.2661 23 6 -1.2735 -5.8583 3.5384 24 7 -2.0598 -6.9074 3.7977 25 6 -2.0714 -7.4768 4.9788 26 6 -1.2677 -7.0205 6.0212 27 6 -0.4398 -5.9521 5.8250 28 6 -0.4301 -5.3430 4.5546 29 6 0.3958 -4.2433 4.2826 30 1 -0.3633 0.4520 0.9229 31 1 -0.3634 0.5733 -0.8528 32 1 -0.3633 -1.0253 -0.0700 33 1 3.1636 1.4026 -0.0699 34 1 1.6705 1.9732 -0.8528 35 1 1.7836 1.9299 0.9230 36 1 2.1642 -0.1783 -2.0848 37 1 1.4599 -1.6759 -1.4045 38 1 6.7448 -2.1699 0.6077 39 1 4.2428 -0.5986 1.0650 40 1 3.6665 -2.2886 1.0469 41 1 0.6464 -2.3178 0.8074 42 1 -0.4627 -3.7431 1.0364 43 1 -1.9084 -5.6421 1.4852 44 1 -2.7217 -8.3224 5.1480 45 1 -1.2999 -7.5104 6.9832 46 1 0.1905 -5.5849 6.6214 47 1 1.0414 -3.8436 5.0506 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975008933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:27 Heat of formation + Delta-G solvation = 47.690611 kcal Electronic energy + Delta-G solvation = -29193.296623 eV Core-core repulsion = 25341.596871 eV Total energy + Delta-G solvation = -3851.699751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.07132 -39.80885 -38.13074 -36.66704 -33.99720 -33.69460 -33.05896 -30.92963 -30.67825 -30.23029 -28.09456 -26.86629 -25.64313 -24.96575 -24.04328 -23.30716 -22.25319 -21.02627 -20.05903 -19.00133 -18.26682 -17.73747 -17.08284 -16.68335 -15.98655 -15.71230 -14.92703 -14.69514 -14.62038 -14.33503 -14.20260 -14.03836 -13.83188 -13.76591 -13.59254 -13.30273 -13.26365 -12.58683 -12.22681 -12.15326 -11.98490 -11.75269 -11.67796 -11.63436 -11.35803 -11.07875 -11.00530 -10.82625 -10.78487 -10.40770 -10.26181 -10.01003 -9.88398 -9.76916 -9.68081 -9.61009 -9.03562 -8.61770 -8.54596 -8.38077 -6.82296 -5.69868 -3.03513 0.05788 0.46976 1.72894 2.35586 3.37567 3.41009 3.45947 3.47021 3.48494 3.97071 4.01390 4.36182 4.44855 4.50549 4.61492 4.73085 4.82465 4.89701 4.94901 5.03867 5.23454 5.26328 5.28781 5.53280 5.53652 5.61102 5.68777 5.72956 5.78605 5.82156 5.90937 6.01037 6.04652 6.12568 6.15925 6.19645 6.23954 6.26433 6.37919 6.53821 6.57573 6.59709 6.66595 6.71099 6.93978 7.57020 7.62198 7.63587 7.80935 7.89882 8.25957 8.52852 9.22095 9.83162 10.48832 11.41105 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013527 B = 0.002919 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.458406 B = 9590.284015 C =10519.956826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.126 4.126 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.006 4.006 9 N -0.916 5.916 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.174 3.826 15 C 0.124 3.876 16 H 0.089 0.911 17 N -0.702 5.702 18 C 0.554 3.446 19 O -0.536 6.536 20 C -0.123 4.123 21 C -0.072 4.072 22 C -0.099 4.099 23 C 0.140 3.860 24 N -0.478 5.478 25 C 0.136 3.864 26 C -0.183 4.183 27 C -0.045 4.045 28 C -0.113 4.113 29 C -0.029 4.029 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.042 0.958 37 H 0.014 0.986 38 H 0.253 0.747 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.395 0.605 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.159 0.841 45 H 0.138 0.862 46 H 0.142 0.858 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.870 -4.961 8.834 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.359 4.359 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.562 5.562 10 Si 0.739 3.261 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.049 3.951 15 C 0.019 3.981 16 H 0.107 0.893 17 N -0.353 5.353 18 C 0.341 3.659 19 O -0.414 6.414 20 C -0.126 4.126 21 C -0.092 4.092 22 C -0.118 4.118 23 C 0.019 3.981 24 N -0.186 5.186 25 C -0.037 4.037 26 C -0.203 4.203 27 C -0.071 4.071 28 C -0.115 4.115 29 C -0.049 4.049 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.032 0.968 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.231 0.769 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.177 0.823 45 H 0.156 0.844 46 H 0.160 0.840 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.599 -4.926 8.688 20.235 hybrid contribution 1.157 -0.196 -0.227 1.195 sum -16.442 -5.123 8.461 19.188 Atomic orbital electron populations 1.21675 0.94722 1.01011 1.01464 1.22099 0.94392 0.96082 0.96549 1.21592 1.02562 0.93643 1.00542 1.21718 0.87786 0.94451 0.94342 1.44428 1.07835 1.78814 1.01780 1.19013 0.87374 1.40408 0.89114 0.90472 1.24828 0.97589 1.01882 0.95933 1.69975 1.22643 1.54265 1.09367 0.86150 0.82948 0.77379 0.79592 1.21636 1.21841 1.20704 1.21539 0.89640 1.00475 0.83465 1.22527 0.92314 0.86049 0.97195 0.89268 1.45941 1.43954 1.33164 1.12220 1.18064 0.82241 0.82822 0.82790 1.90778 1.41046 1.63017 1.46523 1.20098 0.99412 0.98163 0.94900 1.21001 0.93991 0.95456 0.98754 1.20656 0.99955 0.95899 0.95253 1.18991 0.92713 0.92448 0.93946 1.68060 1.20224 1.08371 1.21942 1.23014 0.95337 0.97368 0.87946 1.21887 0.98660 0.98585 1.01186 1.21587 0.96106 0.93840 0.95570 1.18822 0.99382 0.98073 0.95184 1.21461 0.94983 0.92095 0.96364 0.92774 0.92544 0.93196 0.91141 0.92841 0.93322 0.94004 0.96797 0.93698 0.92591 0.93533 0.76899 0.84867 0.84168 0.82345 0.84366 0.84003 0.83597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.23 37.16 0.31 -1.33 16 2 C -0.09 -1.45 0.84 -152.10 -0.13 -1.58 16 3 C -0.13 -1.97 8.58 37.16 0.32 -1.65 16 4 C 0.14 2.78 6.16 -2.27 -0.01 2.77 16 5 N -0.60 -14.85 3.38 -169.77 -0.57 -15.42 16 6 C -0.23 -6.34 10.27 -15.06 -0.15 -6.49 16 7 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16 8 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 9 N -0.92 -27.22 10.36 55.49 0.57 -26.65 16 10 Si 0.91 22.19 29.56 -169.99 -5.02 17.17 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.17 4.24 4.81 -3.06 -0.01 4.23 16 15 C 0.12 2.33 2.54 -66.10 -0.17 2.16 16 16 H 0.09 1.74 7.53 -51.93 -0.39 1.35 16 17 N -0.70 -11.58 4.46 -53.00 -0.24 -11.82 16 18 C 0.55 9.62 7.77 -12.37 -0.10 9.53 16 19 O -0.54 -11.15 15.99 5.31 0.08 -11.07 16 20 C -0.12 -1.75 5.87 -104.99 -0.62 -2.36 16 21 C -0.07 -0.86 9.44 -39.59 -0.37 -1.23 16 22 C -0.10 -1.15 9.95 -39.54 -0.39 -1.54 16 23 C 0.14 1.76 6.61 -84.78 -0.56 1.20 16 24 N -0.48 -5.64 10.33 -10.92 -0.11 -5.75 16 25 C 0.14 1.19 11.14 -17.46 -0.19 0.99 16 26 C -0.18 -1.40 10.03 -39.78 -0.40 -1.80 16 27 C -0.05 -0.41 9.89 -39.18 -0.39 -0.80 16 28 C -0.11 -1.35 5.74 -106.81 -0.61 -1.96 16 29 C -0.03 -0.39 9.35 -38.74 -0.36 -0.75 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.57 6.44 -51.93 -0.33 0.23 16 33 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 37 H 0.01 0.27 8.00 -51.93 -0.42 -0.15 16 38 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.06 1.54 7.30 -51.93 -0.38 1.16 16 40 H 0.05 1.31 7.51 -51.93 -0.39 0.92 16 41 H 0.39 5.57 5.00 -40.82 -0.20 5.37 16 42 H 0.13 1.33 6.35 -52.48 -0.33 0.99 16 43 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 44 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 45 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 46 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.15 1.86 7.62 -52.49 -0.40 1.46 16 LS Contribution 380.75 15.07 5.74 5.74 Total: -1.00 -33.94 380.75 -10.10 -44.04 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.61 Total: 4.64 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -3.94 Total: -0.88 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -0.35 Total: -59.64 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.94 -10.10 -44.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975008933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.731 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds