Wall clock time and date at job start Tue Mar 31 2020 23:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 110.91340 * 2 1 4 4 C 1.55394 * 111.18585 * 235.94675 * 2 1 3 5 5 N 1.47422 * 104.87226 * 204.97832 * 4 2 1 6 6 C 1.36934 * 125.64962 * 204.16877 * 5 4 2 7 7 H 1.08005 * 119.99795 * 354.83861 * 6 5 4 8 8 C 1.38817 * 120.00307 * 174.83297 * 6 5 4 9 9 N 1.31613 * 119.99595 * 7.06937 * 8 6 5 10 10 Si 1.86798 * 119.99926 * 187.06203 * 8 6 5 11 11 H 1.48497 * 109.46668 * 94.99479 * 10 8 6 12 12 H 1.48506 * 109.46790 * 214.98935 * 10 8 6 13 13 H 1.48494 * 109.47577 * 334.99043 * 10 8 6 14 14 C 1.47023 * 108.70386 * 24.13062 * 5 4 2 15 15 C 1.54324 * 107.27126 * 358.94388 * 14 5 4 16 16 H 1.09001 * 110.72050 * 219.26495 * 15 14 5 17 17 N 1.46499 * 110.72277 * 96.16866 * 15 14 5 18 18 C 1.34777 * 120.00027 * 88.84192 * 17 15 14 19 19 O 1.21560 * 119.99945 * 359.97438 * 18 17 15 20 20 C 1.47765 * 120.00053 * 179.97438 * 18 17 15 21 21 C 1.40636 * 119.80582 * 0.21991 * 20 18 17 22 22 C 1.35692 * 120.92326 * 180.20814 * 21 20 18 23 23 C 1.40760 * 120.11711 * 359.54828 * 22 21 20 24 24 N 1.33644 * 120.84805 * 180.28195 * 23 22 21 25 25 C 1.31118 * 121.39492 * 179.97438 * 24 23 22 26 26 C 1.39313 * 121.77889 * 359.97438 * 25 24 23 27 27 C 1.36584 * 119.89592 * 0.02562 * 26 25 24 28 28 C 1.40891 * 118.15581 * 359.97438 * 27 26 25 29 29 C 1.38544 * 119.80393 * 179.97438 * 20 18 17 30 30 H 1.09001 * 109.47074 * 296.09397 * 1 2 3 31 31 H 1.08997 * 109.47507 * 56.09246 * 1 2 3 32 32 H 1.09001 * 109.46917 * 176.09687 * 1 2 3 33 33 H 1.09001 * 109.46793 * 183.90220 * 3 2 1 34 34 H 1.08991 * 109.47555 * 303.90595 * 3 2 1 35 35 H 1.09000 * 109.46677 * 63.90925 * 3 2 1 36 36 H 1.08999 * 110.34277 * 86.12648 * 4 2 1 37 37 H 1.08998 * 110.44327 * 323.88003 * 4 2 1 38 38 H 0.97005 * 120.00033 * 179.97438 * 9 8 6 39 39 H 1.08997 * 109.88398 * 239.52427 * 14 5 4 40 40 H 1.08997 * 109.88347 * 118.36074 * 14 5 4 41 41 H 0.97001 * 119.99658 * 268.84448 * 17 15 14 42 42 H 1.08008 * 119.53750 * 0.02562 * 21 20 18 43 43 H 1.08008 * 119.94253 * 179.81777 * 22 21 20 44 44 H 1.08004 * 119.10918 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.05004 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.91829 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.30378 * 0.05069 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0916 -0.8113 -1.2004 5 7 3.4326 -1.2460 -0.7691 6 6 4.4724 -1.5692 -1.5996 7 1 4.3212 -1.5964 -2.6686 8 6 5.7207 -1.8617 -1.0674 9 7 5.8726 -1.9652 0.2358 10 14 7.1847 -2.1086 -2.2011 11 1 7.9315 -0.8316 -2.3302 12 1 8.0791 -3.1500 -1.6347 13 1 6.7073 -2.5404 -3.5393 14 6 3.4691 -1.2742 0.7004 15 6 2.0862 -0.8080 1.2021 16 1 2.1893 -0.1708 2.0804 17 7 1.2269 -1.9575 1.4960 18 6 1.2428 -2.5145 2.7232 19 8 1.9706 -2.0633 3.5860 20 6 0.3757 -3.6736 3.0199 21 6 -0.4613 -4.1952 2.0173 22 6 -1.2698 -5.2562 2.2661 23 6 -1.2735 -5.8583 3.5384 24 7 -2.0598 -6.9074 3.7977 25 6 -2.0714 -7.4768 4.9788 26 6 -1.2677 -7.0205 6.0212 27 6 -0.4398 -5.9521 5.8250 28 6 -0.4301 -5.3430 4.5546 29 6 0.3958 -4.2433 4.2826 30 1 -0.3633 0.4520 0.9229 31 1 -0.3634 0.5733 -0.8528 32 1 -0.3633 -1.0253 -0.0700 33 1 3.1636 1.4026 -0.0699 34 1 1.6705 1.9732 -0.8528 35 1 1.7836 1.9299 0.9230 36 1 2.1642 -0.1783 -2.0848 37 1 1.4599 -1.6759 -1.4045 38 1 6.7448 -2.1699 0.6077 39 1 4.2428 -0.5986 1.0650 40 1 3.6665 -2.2886 1.0469 41 1 0.6464 -2.3178 0.8074 42 1 -0.4627 -3.7431 1.0364 43 1 -1.9084 -5.6421 1.4852 44 1 -2.7217 -8.3224 5.1480 45 1 -1.2999 -7.5104 6.9832 46 1 0.1905 -5.5849 6.6214 47 1 1.0414 -3.8436 5.0506 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975008933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:26 Heat of formation + Delta-G solvation = 26.148040 kcal Electronic energy + Delta-G solvation = -29194.230779 eV Core-core repulsion = 25341.596871 eV Total energy + Delta-G solvation = -3852.633907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.98802 -41.15217 -39.55810 -37.68309 -35.74226 -34.69479 -34.40032 -32.62252 -31.84485 -31.11329 -29.72015 -28.08354 -27.42827 -26.10408 -24.89842 -24.80187 -23.18574 -22.45775 -21.71279 -20.37799 -19.29206 -18.80688 -18.67654 -17.95786 -17.12807 -16.95933 -16.65719 -16.01138 -15.70357 -15.61196 -15.40392 -15.35581 -15.18175 -14.95084 -14.76538 -14.45086 -14.06534 -13.98950 -13.79572 -13.44192 -13.14673 -13.10553 -12.98644 -12.86469 -12.72652 -12.67137 -12.58641 -12.47620 -12.10515 -11.86767 -11.76886 -11.61382 -11.53681 -11.30448 -11.08678 -10.72359 -10.52894 -10.10923 -9.81936 -9.35095 -8.88749 -7.84740 -5.19952 -0.81876 -0.35928 0.86021 1.39796 1.43660 1.45745 1.54532 2.08025 2.30795 2.48897 3.07108 3.25480 3.33480 3.48001 3.53855 3.60485 3.72531 3.74551 3.95133 3.95852 3.99689 4.03785 4.07410 4.27451 4.39121 4.50900 4.51783 4.67468 4.76182 4.85296 4.87009 4.88756 4.95098 4.95610 5.00656 5.04855 5.12964 5.16671 5.17325 5.26244 5.28546 5.36060 5.46985 5.47614 5.56763 5.70247 5.73149 5.74894 6.17596 6.51166 6.87024 7.07643 7.17958 7.77902 8.42635 9.24987 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013527 B = 0.002919 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.458406 B = 9590.284015 C =10519.956826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 C -0.124 4.124 4 C 0.137 3.863 5 N -0.619 5.619 6 C -0.236 4.236 7 H 0.087 0.913 8 C -0.069 4.069 9 N -0.951 5.951 10 Si 0.975 3.025 11 H -0.288 1.288 12 H -0.300 1.300 13 H -0.264 1.264 14 C 0.192 3.808 15 C 0.137 3.863 16 H 0.079 0.921 17 N -0.692 5.692 18 C 0.552 3.448 19 O -0.581 6.581 20 C -0.145 4.145 21 C -0.073 4.073 22 C -0.099 4.099 23 C 0.124 3.876 24 N -0.505 5.505 25 C 0.140 3.860 26 C -0.169 4.169 27 C -0.055 4.055 28 C -0.129 4.129 29 C -0.031 4.031 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.032 0.968 38 H 0.243 0.757 39 H 0.009 0.991 40 H -0.003 1.003 41 H 0.409 0.591 42 H 0.152 0.848 43 H 0.159 0.841 44 H 0.196 0.804 45 H 0.179 0.821 46 H 0.162 0.838 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.134 -6.037 8.370 23.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.075 4.075 3 C -0.181 4.181 4 C 0.012 3.988 5 N -0.346 5.346 6 C -0.365 4.365 7 H 0.105 0.895 8 C -0.262 4.262 9 N -0.601 5.601 10 Si 0.804 3.196 11 H -0.215 1.215 12 H -0.227 1.227 13 H -0.188 1.188 14 C 0.066 3.934 15 C 0.031 3.969 16 H 0.097 0.903 17 N -0.343 5.343 18 C 0.341 3.659 19 O -0.462 6.462 20 C -0.148 4.148 21 C -0.093 4.093 22 C -0.118 4.118 23 C 0.003 3.997 24 N -0.214 5.214 25 C -0.032 4.032 26 C -0.189 4.189 27 C -0.081 4.081 28 C -0.132 4.132 29 C -0.051 4.051 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.027 0.973 40 H 0.015 0.985 41 H 0.248 0.752 42 H 0.169 0.831 43 H 0.176 0.824 44 H 0.212 0.788 45 H 0.196 0.804 46 H 0.180 0.820 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.929 -6.002 8.172 23.256 hybrid contribution 2.085 -0.006 0.031 2.085 sum -18.844 -6.008 8.203 21.412 Atomic orbital electron populations 1.21661 0.90766 1.02623 1.03178 1.22073 0.97262 0.95253 0.92921 1.21591 1.00038 0.93832 1.02680 1.21996 0.85450 0.95492 0.95855 1.44668 1.09506 1.78727 1.01663 1.19461 0.88262 1.38779 0.89961 0.89498 1.25685 1.00491 1.02780 0.97242 1.70244 1.22365 1.56142 1.11308 0.85095 0.79333 0.76805 0.78354 1.21530 1.22743 1.18802 1.21096 0.91994 0.96532 0.83809 1.22133 0.90112 0.86846 0.97810 0.90283 1.45748 1.43426 1.32573 1.12572 1.18616 0.81831 0.83140 0.82317 1.90744 1.43093 1.64543 1.47861 1.19900 1.00601 0.97957 0.96302 1.21072 0.93640 0.95756 0.98843 1.20882 0.99780 0.95458 0.95647 1.19258 0.93040 0.92990 0.94392 1.68125 1.20887 1.08716 1.23679 1.23772 0.94939 0.97374 0.87142 1.22334 0.96698 0.97339 1.02492 1.21938 0.96884 0.94305 0.94982 1.18984 0.99465 0.98032 0.96670 1.21530 0.95066 0.92553 0.95966 0.91687 0.90116 0.91829 0.95113 0.90180 0.91610 0.93168 0.95043 0.94789 0.97317 0.98507 0.75243 0.83090 0.82363 0.78752 0.80402 0.82004 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 8.23 71.98 0.59 -2.09 16 2 C -0.07 -2.30 0.84 -50.62 -0.04 -2.34 16 3 C -0.12 -3.76 8.58 71.98 0.62 -3.14 16 4 C 0.14 5.16 6.16 87.03 0.54 5.70 16 5 N -0.62 -31.46 3.38 -691.02 -2.34 -33.80 16 6 C -0.24 -13.21 10.27 84.04 0.86 -12.35 16 7 H 0.09 4.60 7.84 -2.91 -0.02 4.57 16 8 C -0.07 -4.04 5.48 84.86 0.46 -3.58 16 9 N -0.95 -60.17 10.36 21.65 0.22 -59.95 16 10 Si 0.98 46.97 29.56 68.60 2.03 49.00 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 12 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 13 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 14 C 0.19 10.00 4.81 86.73 0.42 10.42 16 15 C 0.14 5.32 2.54 46.18 0.12 5.43 16 16 H 0.08 3.25 7.53 -2.39 -0.02 3.24 16 17 N -0.69 -23.24 4.46 -439.86 -1.96 -25.20 16 18 C 0.55 20.10 7.77 86.76 0.67 20.77 16 19 O -0.58 -25.93 15.99 -3.91 -0.06 -25.99 16 20 C -0.14 -4.24 5.87 -20.10 -0.12 -4.36 16 21 C -0.07 -1.71 9.44 22.27 0.21 -1.50 16 22 C -0.10 -2.20 9.95 22.30 0.22 -1.98 16 23 C 0.12 2.98 6.61 40.36 0.27 3.25 16 24 N -0.51 -10.87 10.33 -188.45 -1.95 -12.82 16 25 C 0.14 1.97 11.14 85.06 0.95 2.92 16 26 C -0.17 -1.98 10.03 22.14 0.22 -1.76 16 27 C -0.06 -0.91 9.89 22.53 0.22 -0.69 16 28 C -0.13 -3.04 5.74 -21.28 -0.12 -3.16 16 29 C -0.03 -0.85 9.35 22.82 0.21 -0.64 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.21 6.44 -2.39 -0.02 1.19 16 33 H 0.03 1.16 7.91 -2.39 -0.02 1.14 16 34 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 36 H 0.05 1.83 8.06 -2.39 -0.02 1.81 16 37 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 38 H 0.24 15.11 8.31 -92.70 -0.77 14.34 16 39 H 0.01 0.53 7.30 -2.39 -0.02 0.51 16 40 H 0.00 -0.20 7.51 -2.39 -0.02 -0.22 16 41 H 0.41 11.18 5.00 -92.71 -0.46 10.72 16 42 H 0.15 2.80 6.35 -2.91 -0.02 2.78 16 43 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 44 H 0.20 1.20 8.06 -2.91 -0.02 1.17 16 45 H 0.18 0.67 8.06 -2.91 -0.02 0.64 16 46 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 47 H 0.14 3.84 7.62 -2.91 -0.02 3.82 16 Total: -1.00 -80.85 380.75 2.77 -78.08 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.53 Total: 19.78 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 6.30 Total: 10.90 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -6.02 Total: -131.77 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.06 Total: -25.99 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -80.85 2.77 -78.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975008933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.227 kcal (2) G-P(sol) polarization free energy of solvation -80.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds