Wall clock time and date at job start Tue Mar 31 2020 23:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 110.91165 * 2 1 4 4 C 1.54903 * 111.00130 * 236.09982 * 2 1 3 5 5 N 1.47427 * 104.83653 * 278.93114 * 4 2 1 6 6 C 1.36937 * 125.65160 * 155.90714 * 5 4 2 7 7 H 1.07998 * 119.99665 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00024 * 180.02562 * 6 5 4 9 9 N 1.31624 * 119.99926 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99999 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47174 * 89.99809 * 10 8 6 12 12 H 1.48498 * 109.46984 * 209.99668 * 10 8 6 13 13 H 1.48502 * 109.47050 * 329.99786 * 10 8 6 14 14 C 1.47021 * 108.69824 * 335.87956 * 5 4 2 15 15 C 1.54320 * 107.27360 * 1.05249 * 14 5 4 16 16 H 1.09000 * 110.87063 * 140.63251 * 15 14 5 17 17 N 1.46504 * 110.72110 * 263.83240 * 15 14 5 18 18 C 1.34783 * 119.99884 * 268.52071 * 17 15 14 19 19 O 1.21559 * 120.00144 * 0.02562 * 18 17 15 20 20 C 1.47762 * 119.99521 * 179.97438 * 18 17 15 21 21 C 1.40634 * 119.80736 * 0.02562 * 20 18 17 22 22 C 1.35703 * 120.91906 * 179.97438 * 21 20 18 23 23 C 1.40757 * 120.11759 * 359.97438 * 22 21 20 24 24 N 1.33642 * 120.83513 * 179.97438 * 23 22 21 25 25 C 1.31124 * 121.39288 * 180.02562 * 24 23 22 26 26 C 1.39309 * 121.77155 * 359.97438 * 25 24 23 27 27 C 1.36586 * 119.90530 * 0.02562 * 26 25 24 28 28 C 1.40888 * 118.15319 * 0.02562 * 27 26 25 29 29 C 1.38556 * 119.80220 * 180.27450 * 20 18 17 30 30 H 1.09004 * 109.46857 * 296.09280 * 1 2 3 31 31 H 1.08998 * 109.46956 * 56.09981 * 1 2 3 32 32 H 1.09003 * 109.46850 * 176.09748 * 1 2 3 33 33 H 1.09003 * 109.46712 * 183.90067 * 3 2 1 34 34 H 1.08994 * 109.47688 * 303.90021 * 3 2 1 35 35 H 1.08999 * 109.47099 * 63.90486 * 3 2 1 36 36 H 1.09000 * 110.37018 * 37.77195 * 4 2 1 37 37 H 1.09004 * 110.36614 * 160.09509 * 4 2 1 38 38 H 0.97003 * 119.99601 * 180.02562 * 9 8 6 39 39 H 1.09009 * 109.87977 * 241.63345 * 14 5 4 40 40 H 1.09003 * 109.88586 * 120.47672 * 14 5 4 41 41 H 0.97001 * 119.99734 * 88.52032 * 17 15 14 42 42 H 1.07994 * 119.53758 * 359.97438 * 21 20 18 43 43 H 1.08003 * 119.93973 * 180.02562 * 22 21 20 44 44 H 1.08004 * 119.11619 * 180.02562 * 25 24 23 45 45 H 1.08002 * 120.05279 * 180.02562 * 26 25 24 46 46 H 1.07993 * 120.92279 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.29749 * 359.75680 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 2.0140 -2.2159 -0.7734 6 6 1.9461 -3.3000 -1.6073 7 1 1.9421 -3.1582 -2.6779 8 6 1.8824 -4.5810 -1.0765 9 7 1.8867 -4.7536 0.2284 10 14 1.7905 -6.0598 -2.2140 11 1 3.1641 -6.5273 -2.5301 12 1 1.0374 -7.1518 -1.5464 13 1 1.0969 -5.6761 -3.4698 14 6 2.0285 -2.2646 0.6959 15 6 2.0862 -0.8079 1.2021 16 1 1.4541 -0.6768 2.0805 17 7 3.4667 -0.4156 1.4961 18 6 3.9655 -0.5841 2.7369 19 8 3.2701 -1.0620 3.6119 20 6 5.3581 -0.1888 3.0332 21 6 6.1593 0.3632 2.0177 22 6 7.4409 0.7344 2.2649 23 6 7.9880 0.5706 3.5514 24 7 9.2486 0.9308 3.8107 25 6 9.7695 0.7826 5.0049 26 6 9.0390 0.2446 6.0621 27 6 7.7445 -0.1447 5.8669 28 6 7.1888 0.0151 4.5821 29 6 5.8686 -0.3691 4.3086 30 1 -0.3633 0.4520 0.9230 31 1 -0.3633 0.5732 -0.8530 32 1 -0.3633 -1.0253 -0.0699 33 1 3.1636 1.4026 -0.0699 34 1 1.6705 1.9732 -0.8529 35 1 1.7836 1.9299 0.9229 36 1 1.4672 -0.6461 -2.0837 37 1 3.1182 -0.5233 -1.4025 38 1 1.8426 -5.6488 0.5993 39 1 2.9064 -2.8117 1.0400 40 1 1.1219 -2.7480 1.0599 41 1 4.0218 -0.0346 0.7978 42 1 5.7488 0.4934 1.0273 43 1 8.0419 1.1572 1.4734 44 1 10.7920 1.0866 5.1737 45 1 9.4957 0.1354 7.0347 46 1 7.1633 -0.5642 6.6747 47 1 5.2521 -0.7932 5.0873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975008937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:30 Heat of formation + Delta-G solvation = 47.511945 kcal Electronic energy + Delta-G solvation = -29196.462265 eV Core-core repulsion = 25344.754766 eV Total energy + Delta-G solvation = -3851.707499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.07278 -39.81680 -38.15141 -36.67131 -33.99499 -33.69484 -33.07160 -30.92977 -30.66717 -30.23109 -28.09931 -26.86511 -25.64555 -24.96765 -24.04458 -23.30374 -22.25472 -21.01999 -20.07735 -18.99378 -18.27180 -17.73917 -17.08505 -16.69123 -15.98720 -15.71730 -14.92295 -14.69888 -14.62127 -14.34105 -14.20170 -14.03705 -13.83402 -13.76344 -13.59247 -13.30482 -13.26630 -12.58922 -12.22966 -12.13917 -11.98240 -11.74955 -11.68412 -11.63436 -11.36375 -11.07886 -10.98965 -10.82788 -10.77393 -10.40584 -10.27291 -10.02704 -9.88165 -9.77039 -9.66100 -9.62685 -9.03726 -8.64045 -8.54995 -8.38031 -6.82629 -5.68715 -3.03575 0.05548 0.46842 1.72714 2.35336 3.37267 3.40872 3.45562 3.46719 3.48025 3.96883 4.01291 4.36000 4.44723 4.50385 4.61300 4.72934 4.82396 4.90589 4.95014 5.03908 5.23332 5.26597 5.29886 5.53170 5.53800 5.61637 5.68655 5.72896 5.79713 5.82096 5.91640 6.01240 6.04540 6.12437 6.15967 6.20034 6.24096 6.26283 6.38016 6.53686 6.57622 6.60062 6.66586 6.71000 6.93985 7.55305 7.63145 7.63526 7.80528 7.89621 8.25963 8.52283 9.22407 9.83198 10.48355 11.41876 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.002944 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.843635 B = 9509.799999 C =10464.636358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.230 4.230 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.918 5.918 10 Si 0.911 3.089 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.175 3.825 15 C 0.123 3.877 16 H 0.091 0.909 17 N -0.701 5.701 18 C 0.555 3.445 19 O -0.537 6.537 20 C -0.123 4.123 21 C -0.072 4.072 22 C -0.099 4.099 23 C 0.140 3.860 24 N -0.478 5.478 25 C 0.136 3.864 26 C -0.183 4.183 27 C -0.045 4.045 28 C -0.113 4.113 29 C -0.029 4.029 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.015 0.985 38 H 0.252 0.748 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.395 0.605 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.159 0.841 45 H 0.138 0.862 46 H 0.142 0.858 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.829 14.977 8.872 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.358 4.358 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.049 3.951 15 C 0.019 3.981 16 H 0.109 0.891 17 N -0.352 5.352 18 C 0.341 3.659 19 O -0.415 6.415 20 C -0.126 4.126 21 C -0.092 4.092 22 C -0.118 4.118 23 C 0.019 3.981 24 N -0.186 5.186 25 C -0.037 4.037 26 C -0.203 4.203 27 C -0.071 4.071 28 C -0.115 4.115 29 C -0.049 4.049 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.032 0.968 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.231 0.769 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.177 0.823 45 H 0.156 0.844 46 H 0.160 0.840 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.693 14.730 8.723 20.184 hybrid contribution -0.112 -1.142 -0.228 1.170 sum 10.581 13.588 8.496 19.203 Atomic orbital electron populations 1.21599 0.93222 1.02979 1.00540 1.22024 0.96426 0.94119 0.96575 1.21676 1.00150 0.95610 1.01418 1.21639 0.96524 0.85791 0.94380 1.44434 1.86936 0.99701 1.01796 1.19012 1.43926 0.83966 0.88883 0.90483 1.24810 1.02209 0.97382 0.95955 1.69963 1.56625 1.20793 1.09143 0.86144 0.77498 0.82730 0.79511 1.21700 1.21715 1.20740 1.21534 1.01705 0.88428 0.83413 1.22539 0.80747 0.97621 0.97242 0.89099 1.45929 1.15012 1.63482 1.10773 1.18066 0.86177 0.78718 0.82927 1.90774 1.60086 1.44406 1.46217 1.20098 0.94942 1.02819 0.94723 1.21004 0.93608 0.95769 0.98813 1.20660 0.95109 1.00830 0.95156 1.18991 0.89690 0.95553 0.93858 1.68063 1.11449 1.16804 1.22277 1.23015 0.99907 0.92908 0.87833 1.21887 0.95468 1.01845 1.01121 1.21585 0.95246 0.94630 0.95645 1.18820 0.95371 1.02309 0.94966 1.21461 0.92976 0.94028 0.96441 0.93321 0.92861 0.91156 0.93180 0.92588 0.92814 0.94022 0.96772 0.93710 0.93360 0.92709 0.76874 0.84850 0.84163 0.82342 0.84367 0.84006 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.57 37.16 0.32 -1.65 16 2 C -0.09 -1.46 0.83 -152.36 -0.13 -1.59 16 3 C -0.13 -1.65 8.22 37.16 0.31 -1.34 16 4 C 0.14 2.77 6.12 -2.53 -0.02 2.76 16 5 N -0.60 -14.82 3.38 -170.07 -0.57 -15.39 16 6 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 7 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 9 N -0.92 -27.26 10.31 55.49 0.57 -26.68 16 10 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 14 C 0.17 4.24 4.79 -3.07 -0.01 4.23 16 15 C 0.12 2.31 2.59 -66.10 -0.17 2.14 16 16 H 0.09 1.78 7.45 -51.93 -0.39 1.39 16 17 N -0.70 -11.58 4.40 -53.00 -0.23 -11.81 16 18 C 0.55 9.60 7.77 -12.36 -0.10 9.50 16 19 O -0.54 -11.11 15.95 5.31 0.08 -11.03 16 20 C -0.12 -1.74 5.87 -104.98 -0.62 -2.36 16 21 C -0.07 -0.86 9.44 -39.58 -0.37 -1.23 16 22 C -0.10 -1.15 9.95 -39.54 -0.39 -1.54 16 23 C 0.14 1.76 6.61 -84.78 -0.56 1.20 16 24 N -0.48 -5.65 10.33 -10.92 -0.11 -5.76 16 25 C 0.14 1.19 11.15 -17.46 -0.19 0.99 16 26 C -0.18 -1.40 10.03 -39.78 -0.40 -1.80 16 27 C -0.05 -0.41 9.89 -39.18 -0.39 -0.80 16 28 C -0.11 -1.35 5.74 -106.82 -0.61 -1.96 16 29 C -0.03 -0.38 9.35 -38.73 -0.36 -0.75 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 33 H 0.05 0.58 6.48 -51.93 -0.34 0.24 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.04 0.80 8.05 -51.93 -0.42 0.38 16 37 H 0.01 0.27 7.98 -51.93 -0.41 -0.14 16 38 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.05 1.35 7.41 -51.92 -0.38 0.97 16 40 H 0.05 1.51 7.38 -51.93 -0.38 1.12 16 41 H 0.40 5.62 5.10 -40.82 -0.21 5.41 16 42 H 0.13 1.34 6.35 -52.49 -0.33 1.00 16 43 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 44 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 45 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 46 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 47 H 0.15 1.85 7.62 -52.49 -0.40 1.45 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -33.84 380.59 -10.11 -43.94 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.60 Total: 4.76 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -3.95 Total: -0.94 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.35 Total: -59.65 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.84 -10.11 -43.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975008937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.455 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds