Wall clock time and date at job start Tue Mar 31 2020 23:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 110.77694 * 2 1 4 4 C 1.54326 * 110.71799 * 236.76708 * 2 1 3 5 5 N 1.47023 * 107.26741 * 219.44082 * 4 2 1 6 6 C 1.36939 * 125.64918 * 178.98411 * 5 4 2 7 7 H 1.08000 * 119.99677 * 349.94522 * 6 5 4 8 8 C 1.38807 * 120.00066 * 169.94647 * 6 5 4 9 9 N 1.31619 * 120.00225 * 350.41290 * 8 6 5 10 10 Si 1.86801 * 119.99912 * 170.42346 * 8 6 5 11 11 H 1.48496 * 109.47578 * 94.13744 * 10 8 6 12 12 H 1.48503 * 109.46965 * 214.13506 * 10 8 6 13 13 H 1.48499 * 109.47087 * 334.13308 * 10 8 6 14 14 C 1.47426 * 108.70599 * 358.94270 * 5 4 2 15 15 C 1.54911 * 104.83051 * 24.12493 * 14 5 4 16 16 H 1.09003 * 111.03285 * 204.90407 * 15 14 5 17 17 N 1.46501 * 111.00258 * 81.06977 * 15 14 5 18 18 C 1.34775 * 119.99847 * 92.80459 * 17 15 14 19 19 O 1.21543 * 120.00444 * 359.97438 * 18 17 15 20 20 C 1.47886 * 119.99665 * 180.02562 * 18 17 15 21 21 C 1.40572 * 119.70978 * 0.02562 * 20 18 17 22 22 C 1.35814 * 120.73932 * 179.97438 * 21 20 18 23 23 C 1.40550 * 119.98535 * 0.04360 * 22 21 20 24 24 C 1.40822 * 121.14832 * 179.97438 * 23 22 21 25 25 C 1.36553 * 118.19933 * 180.22741 * 24 23 22 26 26 C 1.39418 * 119.94050 * 359.46844 * 25 24 23 27 27 N 1.31018 * 121.71215 * 0.57244 * 26 25 24 28 28 C 1.33750 * 121.35046 * 359.70409 * 27 26 25 29 29 C 1.38410 * 119.70838 * 179.97438 * 20 18 17 30 30 H 1.09000 * 109.47139 * 296.75751 * 1 2 3 31 31 H 1.08993 * 109.47011 * 56.75918 * 1 2 3 32 32 H 1.08996 * 109.46772 * 176.76033 * 1 2 3 33 33 H 1.09006 * 109.46920 * 183.24116 * 3 2 1 34 34 H 1.08999 * 109.47499 * 303.23830 * 3 2 1 35 35 H 1.08998 * 109.46888 * 63.24671 * 3 2 1 36 36 H 1.08995 * 109.88357 * 338.85552 * 4 2 1 37 37 H 1.08991 * 109.88423 * 100.02591 * 4 2 1 38 38 H 0.97000 * 120.00490 * 180.02562 * 9 8 6 39 39 H 1.09005 * 110.36059 * 265.28871 * 14 5 4 40 40 H 1.08997 * 110.36957 * 142.96882 * 14 5 4 41 41 H 0.96997 * 119.99782 * 272.80042 * 17 15 14 42 42 H 1.07996 * 119.62821 * 359.97438 * 21 20 18 43 43 H 1.07998 * 120.00528 * 179.97438 * 22 21 20 44 44 H 1.07995 * 120.89536 * 359.95515 * 24 23 22 45 45 H 1.07991 * 120.02593 * 179.72480 * 25 24 23 46 46 H 1.08002 * 119.14524 * 180.28394 * 26 25 24 47 47 H 1.08004 * 120.22990 * 0.04913 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7911 -1.2074 5 7 3.2445 -1.5506 -0.7392 6 6 4.0045 -2.3967 -1.5020 7 1 3.6725 -2.6774 -2.4907 8 6 5.2013 -2.8935 -1.0046 9 7 5.7004 -2.4106 0.1134 10 14 6.1039 -4.2473 -1.9223 11 1 7.1177 -3.6434 -2.8238 12 1 6.7785 -5.1414 -0.9473 13 1 5.1330 -5.0333 -2.7252 14 6 3.4633 -1.2498 0.6874 15 6 2.0790 -0.7955 1.2137 16 1 2.1845 -0.1520 2.0872 17 7 1.2272 -1.9489 1.5143 18 6 1.2027 -2.4618 2.7604 19 8 1.8875 -1.9679 3.6346 20 6 0.3432 -3.6265 3.0637 21 6 -0.4452 -4.1940 2.0476 22 6 -1.2416 -5.2641 2.3028 23 6 -1.2844 -5.8156 3.5949 24 6 -2.1017 -6.9246 3.8868 25 6 -2.1005 -7.4088 5.1636 26 6 -1.2952 -6.8126 6.1331 27 7 -0.5361 -5.7807 5.8584 28 6 -0.4951 -5.2544 4.6295 29 6 0.3230 -4.1488 4.3453 30 1 -0.3633 0.4627 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0581 33 1 3.1610 1.4062 -0.0581 34 1 1.6751 1.9701 -0.8595 35 1 1.7691 1.9343 0.9177 36 1 1.3130 -1.4757 -1.5777 37 1 2.3740 -0.1023 -1.9977 38 1 6.5370 -2.7575 0.4609 39 1 4.1932 -0.4478 0.7983 40 1 3.7961 -2.1426 1.2167 41 1 0.6809 -2.3433 0.8166 42 1 -0.4172 -3.7743 1.0529 43 1 -1.8427 -5.6904 1.5134 44 1 -2.7163 -7.3769 3.1227 45 1 -2.7196 -8.2553 5.4211 46 1 -1.3007 -7.2089 7.1378 47 1 0.9311 -3.7084 5.1217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977350296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:41 Heat of formation + Delta-G solvation = 46.287722 kcal Electronic energy + Delta-G solvation = -29354.401762 eV Core-core repulsion = 25502.641177 eV Total energy + Delta-G solvation = -3851.760585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.04079 -39.78212 -38.14535 -36.68066 -33.87616 -33.66052 -33.14114 -30.91538 -30.69061 -30.15856 -28.16430 -26.88937 -25.64466 -24.94879 -24.04356 -23.24190 -22.23988 -21.02729 -20.08651 -19.00046 -18.18601 -17.56849 -17.02368 -16.67955 -16.13274 -15.75868 -14.87835 -14.66043 -14.60517 -14.31820 -14.19899 -14.03593 -13.81032 -13.71012 -13.63501 -13.27667 -13.18531 -12.75994 -12.18908 -12.00362 -11.94728 -11.81556 -11.77136 -11.67061 -11.34922 -11.27646 -10.88892 -10.77971 -10.74813 -10.42579 -10.21087 -10.03373 -9.90935 -9.73754 -9.71017 -9.58821 -8.99303 -8.59251 -8.51423 -8.38123 -6.78505 -5.72922 -3.06485 0.11144 0.47829 1.73360 2.42569 3.37811 3.39507 3.44958 3.47475 3.48253 4.01567 4.11266 4.34941 4.48805 4.49374 4.62553 4.73473 4.82577 4.94108 4.98537 5.05488 5.22785 5.27183 5.27971 5.50791 5.57162 5.61363 5.68415 5.71083 5.77600 5.86302 5.87781 6.00074 6.08440 6.11508 6.17248 6.18303 6.23645 6.30322 6.38785 6.50336 6.56014 6.59294 6.68685 6.71220 6.96185 7.51489 7.56292 7.68956 7.79358 7.91910 8.27095 8.57325 9.19182 9.81971 10.48722 11.39278 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.003375 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.329043 B = 8293.268877 C = 9590.293725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.142 3.858 5 N -0.600 5.600 6 C -0.233 4.233 7 H 0.075 0.925 8 C -0.004 4.004 9 N -0.913 5.913 10 Si 0.908 3.092 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.168 3.832 15 C 0.121 3.879 16 H 0.092 0.908 17 N -0.694 5.694 18 C 0.554 3.446 19 O -0.536 6.536 20 C -0.106 4.106 21 C -0.085 4.085 22 C -0.103 4.103 23 C -0.089 4.089 24 C -0.061 4.061 25 C -0.172 4.172 26 C 0.126 3.874 27 N -0.465 5.465 28 C 0.117 3.883 29 C -0.027 4.027 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.021 0.979 37 H 0.025 0.975 38 H 0.253 0.747 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.397 0.603 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.160 0.840 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.376 -4.797 6.032 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 C -0.187 4.187 4 C 0.016 3.984 5 N -0.326 5.326 6 C -0.361 4.361 7 H 0.093 0.907 8 C -0.201 4.201 9 N -0.559 5.559 10 Si 0.738 3.262 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.042 3.958 15 C 0.016 3.984 16 H 0.110 0.890 17 N -0.344 5.344 18 C 0.340 3.660 19 O -0.414 6.414 20 C -0.111 4.111 21 C -0.104 4.104 22 C -0.122 4.122 23 C -0.091 4.091 24 C -0.087 4.087 25 C -0.192 4.192 26 C -0.048 4.048 27 N -0.173 5.173 28 C -0.003 4.003 29 C -0.047 4.047 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.092 0.908 41 H 0.233 0.767 42 H 0.150 0.850 43 H 0.153 0.847 44 H 0.158 0.842 45 H 0.155 0.845 46 H 0.177 0.823 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.087 -4.058 7.232 19.898 hybrid contribution -0.168 -1.439 -1.583 2.146 sum -18.255 -5.497 5.649 19.884 Atomic orbital electron populations 1.21715 0.94607 1.01117 1.01376 1.21840 0.94833 0.95848 0.96237 1.21693 1.02083 0.93968 1.00908 1.21421 0.90420 0.92884 0.93664 1.44443 1.31004 1.50509 1.06648 1.18951 0.99828 1.18937 0.98367 0.90734 1.24812 0.96896 1.00431 0.97962 1.69940 1.20561 1.43498 1.21943 0.86184 0.79657 0.81772 0.78592 1.21625 1.21665 1.20681 1.21782 0.89226 1.00140 0.84612 1.22616 0.93005 0.86138 0.96647 0.89021 1.45729 1.45603 1.32871 1.10226 1.18058 0.81935 0.83018 0.82974 1.90772 1.42983 1.61135 1.46508 1.20057 0.99065 0.97724 0.94238 1.21031 0.94772 0.95715 0.98838 1.20850 0.99667 0.96438 0.95225 1.18949 0.98098 0.96959 0.95090 1.21504 0.96148 0.93849 0.97162 1.21937 1.01188 1.01872 0.94232 1.22995 0.90902 0.91057 0.99797 1.68032 1.19142 1.10449 1.19664 1.18770 0.96505 0.96024 0.89042 1.21247 0.94957 0.92176 0.96275 0.92771 0.92645 0.93089 0.91577 0.92667 0.93031 0.96140 0.95721 0.93629 0.94559 0.90778 0.76730 0.84977 0.84673 0.84245 0.84459 0.82291 0.83126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.07 37.16 0.30 -1.35 16 2 C -0.09 -1.39 0.80 -152.67 -0.12 -1.52 16 3 C -0.13 -1.93 8.41 37.16 0.31 -1.62 16 4 C 0.14 2.77 6.41 -3.06 -0.02 2.75 16 5 N -0.60 -14.72 3.39 -170.07 -0.58 -15.29 16 6 C -0.23 -6.36 10.24 -15.06 -0.15 -6.51 16 7 H 0.07 1.97 7.85 -52.49 -0.41 1.56 16 8 C 0.00 -0.11 5.40 -17.43 -0.09 -0.20 16 9 N -0.91 -27.12 10.68 55.49 0.59 -26.53 16 10 Si 0.91 22.16 29.56 -169.99 -5.03 17.14 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.17 4.07 4.80 -2.53 -0.01 4.06 16 15 C 0.12 2.28 2.67 -65.78 -0.18 2.11 16 16 H 0.09 1.77 7.44 -51.93 -0.39 1.39 16 17 N -0.69 -11.87 4.49 -52.66 -0.24 -12.10 16 18 C 0.55 10.04 7.77 -12.31 -0.10 9.95 16 19 O -0.54 -11.56 15.93 5.33 0.08 -11.47 16 20 C -0.11 -1.61 5.87 -105.00 -0.62 -2.22 16 21 C -0.09 -1.04 9.44 -39.57 -0.37 -1.41 16 22 C -0.10 -1.08 9.74 -39.58 -0.39 -1.47 16 23 C -0.09 -1.03 5.75 -106.72 -0.61 -1.64 16 24 C -0.06 -0.52 9.89 -39.21 -0.39 -0.91 16 25 C -0.17 -1.32 10.03 -39.75 -0.40 -1.72 16 26 C 0.13 1.20 11.15 -17.46 -0.19 1.00 16 27 N -0.47 -6.18 10.34 -10.98 -0.11 -6.29 16 28 C 0.12 1.63 6.60 -84.87 -0.56 1.07 16 29 C -0.03 -0.41 9.56 -38.69 -0.37 -0.78 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.60 6.48 -51.93 -0.34 0.27 16 33 H 0.07 1.14 7.57 -51.93 -0.39 0.75 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.02 0.39 7.76 -51.93 -0.40 -0.02 16 37 H 0.02 0.50 7.84 -51.93 -0.41 0.09 16 38 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.04 0.96 7.73 -51.93 -0.40 0.56 16 40 H 0.07 2.09 6.93 -51.93 -0.36 1.73 16 41 H 0.40 5.95 5.16 -40.82 -0.21 5.74 16 42 H 0.13 1.38 6.34 -52.49 -0.33 1.05 16 43 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 46 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.15 2.42 7.60 -52.48 -0.40 2.02 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -34.05 380.14 -10.07 -44.12 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.56 Total: 5.13 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -3.96 Total: -0.42 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.33 Total: -60.22 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.08 Total: -11.47 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.05 -10.07 -44.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977350296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.406 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds