Wall clock time and date at job start Tue Mar 31 2020 23:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 110.77694 * 2 1 4 4 C 1.54326 * 110.71799 * 236.76708 * 2 1 3 5 5 N 1.47023 * 107.26741 * 219.44082 * 4 2 1 6 6 C 1.36939 * 125.64918 * 178.98411 * 5 4 2 7 7 H 1.08000 * 119.99677 * 349.94522 * 6 5 4 8 8 C 1.38807 * 120.00066 * 169.94647 * 6 5 4 9 9 N 1.31619 * 120.00225 * 350.41290 * 8 6 5 10 10 Si 1.86801 * 119.99912 * 170.42346 * 8 6 5 11 11 H 1.48496 * 109.47578 * 94.13744 * 10 8 6 12 12 H 1.48503 * 109.46965 * 214.13506 * 10 8 6 13 13 H 1.48499 * 109.47087 * 334.13308 * 10 8 6 14 14 C 1.47426 * 108.70599 * 358.94270 * 5 4 2 15 15 C 1.54911 * 104.83051 * 24.12493 * 14 5 4 16 16 H 1.09003 * 111.03285 * 204.90407 * 15 14 5 17 17 N 1.46501 * 111.00258 * 81.06977 * 15 14 5 18 18 C 1.34775 * 119.99847 * 92.80459 * 17 15 14 19 19 O 1.21543 * 120.00444 * 359.97438 * 18 17 15 20 20 C 1.47886 * 119.99665 * 180.02562 * 18 17 15 21 21 C 1.40572 * 119.70978 * 0.02562 * 20 18 17 22 22 C 1.35814 * 120.73932 * 179.97438 * 21 20 18 23 23 C 1.40550 * 119.98535 * 0.04360 * 22 21 20 24 24 C 1.40822 * 121.14832 * 179.97438 * 23 22 21 25 25 C 1.36553 * 118.19933 * 180.22741 * 24 23 22 26 26 C 1.39418 * 119.94050 * 359.46844 * 25 24 23 27 27 N 1.31018 * 121.71215 * 0.57244 * 26 25 24 28 28 C 1.33750 * 121.35046 * 359.70409 * 27 26 25 29 29 C 1.38410 * 119.70838 * 179.97438 * 20 18 17 30 30 H 1.09000 * 109.47139 * 296.75751 * 1 2 3 31 31 H 1.08993 * 109.47011 * 56.75918 * 1 2 3 32 32 H 1.08996 * 109.46772 * 176.76033 * 1 2 3 33 33 H 1.09006 * 109.46920 * 183.24116 * 3 2 1 34 34 H 1.08999 * 109.47499 * 303.23830 * 3 2 1 35 35 H 1.08998 * 109.46888 * 63.24671 * 3 2 1 36 36 H 1.08995 * 109.88357 * 338.85552 * 4 2 1 37 37 H 1.08991 * 109.88423 * 100.02591 * 4 2 1 38 38 H 0.97000 * 120.00490 * 180.02562 * 9 8 6 39 39 H 1.09005 * 110.36059 * 265.28871 * 14 5 4 40 40 H 1.08997 * 110.36957 * 142.96882 * 14 5 4 41 41 H 0.96997 * 119.99782 * 272.80042 * 17 15 14 42 42 H 1.07996 * 119.62821 * 359.97438 * 21 20 18 43 43 H 1.07998 * 120.00528 * 179.97438 * 22 21 20 44 44 H 1.07995 * 120.89536 * 359.95515 * 24 23 22 45 45 H 1.07991 * 120.02593 * 179.72480 * 25 24 23 46 46 H 1.08002 * 119.14524 * 180.28394 * 26 25 24 47 47 H 1.08004 * 120.22990 * 0.04913 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7911 -1.2074 5 7 3.2445 -1.5506 -0.7392 6 6 4.0045 -2.3967 -1.5020 7 1 3.6725 -2.6774 -2.4907 8 6 5.2013 -2.8935 -1.0046 9 7 5.7004 -2.4106 0.1134 10 14 6.1039 -4.2473 -1.9223 11 1 7.1177 -3.6434 -2.8238 12 1 6.7785 -5.1414 -0.9473 13 1 5.1330 -5.0333 -2.7252 14 6 3.4633 -1.2498 0.6874 15 6 2.0790 -0.7955 1.2137 16 1 2.1845 -0.1520 2.0872 17 7 1.2272 -1.9489 1.5143 18 6 1.2027 -2.4618 2.7604 19 8 1.8875 -1.9679 3.6346 20 6 0.3432 -3.6265 3.0637 21 6 -0.4452 -4.1940 2.0476 22 6 -1.2416 -5.2641 2.3028 23 6 -1.2844 -5.8156 3.5949 24 6 -2.1017 -6.9246 3.8868 25 6 -2.1005 -7.4088 5.1636 26 6 -1.2952 -6.8126 6.1331 27 7 -0.5361 -5.7807 5.8584 28 6 -0.4951 -5.2544 4.6295 29 6 0.3230 -4.1488 4.3453 30 1 -0.3633 0.4627 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0581 33 1 3.1610 1.4062 -0.0581 34 1 1.6751 1.9701 -0.8595 35 1 1.7691 1.9343 0.9177 36 1 1.3130 -1.4757 -1.5777 37 1 2.3740 -0.1023 -1.9977 38 1 6.5370 -2.7575 0.4609 39 1 4.1932 -0.4478 0.7983 40 1 3.7961 -2.1426 1.2167 41 1 0.6809 -2.3433 0.8166 42 1 -0.4172 -3.7743 1.0529 43 1 -1.8427 -5.6904 1.5134 44 1 -2.7163 -7.3769 3.1227 45 1 -2.7196 -8.2553 5.4211 46 1 -1.3007 -7.2089 7.1378 47 1 0.9311 -3.7084 5.1217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977350296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:40 Heat of formation + Delta-G solvation = 24.089911 kcal Electronic energy + Delta-G solvation = -29355.364332 eV Core-core repulsion = 25502.641177 eV Total energy + Delta-G solvation = -3852.723154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.98297 -41.15999 -39.59317 -37.71488 -35.69503 -34.64637 -34.47846 -32.64731 -31.83283 -31.05345 -29.78620 -28.08413 -27.44634 -26.11489 -24.89107 -24.76045 -23.19234 -22.48916 -21.71962 -20.37562 -19.32953 -18.70129 -18.50813 -17.92890 -17.23831 -17.14721 -16.63654 -16.04882 -15.72381 -15.51004 -15.47850 -15.29329 -15.19620 -14.85336 -14.66735 -14.57763 -14.20374 -13.91919 -13.74332 -13.63593 -13.19700 -13.00272 -12.95872 -12.83011 -12.72478 -12.64500 -12.60639 -12.50608 -12.10114 -11.82452 -11.78887 -11.57718 -11.56084 -11.37167 -11.10455 -10.69668 -10.49412 -10.11189 -9.81279 -9.34553 -8.83317 -7.87130 -5.22164 -0.78375 -0.37019 0.86317 1.42993 1.44808 1.45369 1.54121 2.05216 2.28765 2.48268 3.08124 3.26896 3.32939 3.52287 3.53565 3.62309 3.68302 3.82673 3.94099 3.95647 4.03712 4.06329 4.07926 4.27752 4.39969 4.47558 4.57226 4.70375 4.72208 4.83822 4.86082 4.88585 4.93456 4.94742 5.02896 5.07647 5.10975 5.17410 5.18451 5.27607 5.30665 5.34254 5.47593 5.50014 5.53655 5.66015 5.68433 5.77669 6.18831 6.51372 6.91042 7.05779 7.16518 7.76825 8.43242 9.23952 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.003375 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.329043 B = 8293.268877 C = 9590.293725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.072 4.072 3 C -0.128 4.128 4 C 0.137 3.863 5 N -0.616 5.616 6 C -0.235 4.235 7 H 0.086 0.914 8 C -0.067 4.067 9 N -0.951 5.951 10 Si 0.973 3.027 11 H -0.287 1.287 12 H -0.302 1.302 13 H -0.262 1.262 14 C 0.181 3.819 15 C 0.133 3.867 16 H 0.082 0.918 17 N -0.683 5.683 18 C 0.549 3.451 19 O -0.584 6.584 20 C -0.119 4.119 21 C -0.100 4.100 22 C -0.081 4.081 23 C -0.101 4.101 24 C -0.056 4.056 25 C -0.162 4.162 26 C 0.126 3.874 27 N -0.514 5.514 28 C 0.094 3.906 29 C -0.052 4.052 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.043 0.957 37 H 0.026 0.974 38 H 0.243 0.757 39 H -0.002 1.002 40 H 0.023 0.977 41 H 0.410 0.590 42 H 0.151 0.849 43 H 0.180 0.820 44 H 0.182 0.818 45 H 0.182 0.818 46 H 0.189 0.811 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.078 -7.113 4.048 25.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.073 4.073 3 C -0.185 4.185 4 C 0.012 3.988 5 N -0.342 5.342 6 C -0.365 4.365 7 H 0.104 0.896 8 C -0.260 4.260 9 N -0.599 5.599 10 Si 0.802 3.198 11 H -0.214 1.214 12 H -0.229 1.229 13 H -0.186 1.186 14 C 0.055 3.945 15 C 0.027 3.973 16 H 0.100 0.900 17 N -0.333 5.333 18 C 0.338 3.662 19 O -0.466 6.466 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.099 4.099 23 C -0.103 4.103 24 C -0.082 4.082 25 C -0.181 4.181 26 C -0.047 4.047 27 N -0.223 5.223 28 C -0.026 4.026 29 C -0.072 4.072 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.016 0.984 40 H 0.041 0.959 41 H 0.248 0.752 42 H 0.168 0.832 43 H 0.197 0.803 44 H 0.199 0.801 45 H 0.199 0.801 46 H 0.206 0.794 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -22.851 -6.370 5.193 24.284 hybrid contribution 1.210 -0.831 -0.861 1.702 sum -21.640 -7.201 4.333 23.215 Atomic orbital electron populations 1.21698 0.90831 1.02560 1.03095 1.21828 0.97608 0.95326 0.92529 1.21704 1.00001 0.93752 1.03058 1.21680 0.88975 0.93138 0.94968 1.44672 1.31999 1.50873 1.06649 1.19409 0.99756 1.18539 0.98747 0.89586 1.25665 0.98293 1.03056 0.99021 1.70191 1.20656 1.45125 1.23954 0.85142 0.78556 0.78945 0.77176 1.21358 1.22917 1.18626 1.21386 0.91665 0.96571 0.84911 1.22270 0.90782 0.86810 0.97428 0.89959 1.45563 1.45003 1.32362 1.10382 1.18663 0.81561 0.83417 0.82604 1.90734 1.45119 1.62776 1.47937 1.19855 1.00036 0.97213 0.95265 1.21165 0.95219 0.96848 0.98603 1.21323 0.98135 0.94690 0.95734 1.19288 0.98192 0.98026 0.94840 1.22011 0.95239 0.92294 0.98615 1.22422 1.00156 1.02168 0.93339 1.23708 0.89560 0.89566 1.01819 1.68004 1.21587 1.12714 1.19964 1.18813 0.97261 0.96054 0.90432 1.21131 0.96261 0.93883 0.95943 0.91786 0.90109 0.91955 0.94910 0.89964 0.91345 0.93928 0.95640 0.94760 0.98430 0.95865 0.75173 0.83187 0.80254 0.80085 0.80096 0.79449 0.86124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 8.07 71.98 0.58 -2.14 16 2 C -0.07 -2.24 0.80 -50.99 -0.04 -2.28 16 3 C -0.13 -3.71 8.41 71.98 0.61 -3.11 16 4 C 0.14 5.19 6.41 86.73 0.56 5.74 16 5 N -0.62 -31.00 3.39 -691.99 -2.35 -33.35 16 6 C -0.24 -13.07 10.24 84.03 0.86 -12.21 16 7 H 0.09 4.49 7.85 -2.91 -0.02 4.46 16 8 C -0.07 -3.91 5.40 84.86 0.46 -3.45 16 9 N -0.95 -60.09 10.68 21.65 0.23 -59.86 16 10 Si 0.97 46.72 29.56 68.60 2.03 48.75 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 13 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 14 C 0.18 9.41 4.80 86.86 0.42 9.83 16 15 C 0.13 5.23 2.67 46.38 0.12 5.36 16 16 H 0.08 3.40 7.44 -2.39 -0.02 3.38 16 17 N -0.68 -23.96 4.49 -438.79 -1.97 -25.94 16 18 C 0.55 21.35 7.77 86.80 0.67 22.02 16 19 O -0.58 -27.80 15.93 -3.85 -0.06 -27.86 16 20 C -0.12 -3.81 5.87 -20.11 -0.12 -3.93 16 21 C -0.10 -2.31 9.44 22.28 0.21 -2.10 16 22 C -0.08 -1.43 9.74 22.27 0.22 -1.21 16 23 C -0.10 -2.09 5.75 -21.23 -0.12 -2.21 16 24 C -0.06 -0.69 9.89 22.51 0.22 -0.47 16 25 C -0.16 -1.74 10.03 22.16 0.22 -1.52 16 26 C 0.13 2.12 11.15 85.10 0.95 3.07 16 27 N -0.51 -13.83 10.34 -188.66 -1.95 -15.78 16 28 C 0.09 2.67 6.60 40.25 0.27 2.94 16 29 C -0.05 -1.75 9.56 22.85 0.22 -1.53 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.24 6.48 -2.39 -0.02 1.22 16 33 H 0.03 1.16 7.57 -2.38 -0.02 1.14 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.04 1.46 7.76 -2.39 -0.02 1.44 16 37 H 0.03 0.98 7.84 -2.39 -0.02 0.96 16 38 H 0.24 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.00 -0.13 7.73 -2.38 -0.02 -0.14 16 40 H 0.02 1.42 6.93 -2.39 -0.02 1.40 16 41 H 0.41 11.94 5.16 -92.71 -0.48 11.46 16 42 H 0.15 2.78 6.34 -2.91 -0.02 2.76 16 43 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 44 H 0.18 0.73 8.06 -2.91 -0.02 0.70 16 45 H 0.18 0.39 8.06 -2.92 -0.02 0.37 16 46 H 0.19 1.80 8.06 -2.91 -0.02 1.78 16 47 H 0.12 4.55 7.60 -2.91 -0.02 4.53 16 Total: -1.00 -84.13 380.14 2.74 -81.39 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.51 Total: 19.84 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 6.30 Total: 12.80 kcal Atomic # 7 Polarization: -128.88 SS G_CDS: -6.04 Total: -134.92 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.06 Total: -27.86 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -84.13 2.74 -81.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977350296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.481 kcal (2) G-P(sol) polarization free energy of solvation -84.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds