Wall clock time and date at job start Tue Mar 31 2020 23:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 110.78037 * 2 1 4 4 C 1.54429 * 110.72339 * 236.70859 * 2 1 3 5 5 N 1.47016 * 107.28159 * 263.84336 * 4 2 1 6 6 C 1.36938 * 125.64829 * 181.09369 * 5 4 2 7 7 H 1.07997 * 120.00192 * 359.97438 * 6 5 4 8 8 C 1.38820 * 120.00105 * 179.97438 * 6 5 4 9 9 N 1.31628 * 119.99717 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00070 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47210 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46743 * 120.00381 * 10 8 6 13 13 H 1.48502 * 109.47084 * 240.00194 * 10 8 6 14 14 C 1.47430 * 108.70387 * 1.06224 * 5 4 2 15 15 C 1.54902 * 104.82974 * 335.86802 * 14 5 4 16 16 H 1.09004 * 111.00459 * 155.11591 * 15 14 5 17 17 N 1.46495 * 111.00624 * 278.93174 * 15 14 5 18 18 C 1.34768 * 120.00468 * 270.41998 * 17 15 14 19 19 O 1.21552 * 119.99724 * 359.97438 * 18 17 15 20 20 C 1.47883 * 120.00525 * 180.02562 * 18 17 15 21 21 C 1.40576 * 119.70301 * 359.97438 * 20 18 17 22 22 C 1.35819 * 120.73512 * 180.02562 * 21 20 18 23 23 C 1.40545 * 119.98106 * 359.97438 * 22 21 20 24 24 C 1.40827 * 121.13346 * 179.97438 * 23 22 21 25 25 C 1.36555 * 118.19689 * 180.30333 * 24 23 22 26 26 C 1.39416 * 119.94018 * 359.50444 * 25 24 23 27 27 N 1.31026 * 121.71101 * 0.48211 * 26 25 24 28 28 C 1.33739 * 121.35158 * 359.77453 * 27 26 25 29 29 C 1.38405 * 119.71283 * 180.02562 * 20 18 17 30 30 H 1.08997 * 109.46993 * 296.75560 * 1 2 3 31 31 H 1.08997 * 109.46989 * 56.75995 * 1 2 3 32 32 H 1.09000 * 109.46655 * 176.75908 * 1 2 3 33 33 H 1.09000 * 109.47181 * 183.24096 * 3 2 1 34 34 H 1.08998 * 109.47306 * 303.24189 * 3 2 1 35 35 H 1.09004 * 109.46449 * 63.23962 * 3 2 1 36 36 H 1.09002 * 109.87613 * 144.42648 * 4 2 1 37 37 H 1.09002 * 110.00842 * 23.33794 * 4 2 1 38 38 H 0.96999 * 119.99478 * 179.97438 * 9 8 6 39 39 H 1.09000 * 110.36784 * 217.02959 * 14 5 4 40 40 H 1.09004 * 110.36313 * 94.70661 * 14 5 4 41 41 H 0.97009 * 119.99733 * 90.42126 * 17 15 14 42 42 H 1.08002 * 119.63488 * 359.97438 * 21 20 18 43 43 H 1.08003 * 120.00710 * 180.02562 * 22 21 20 44 44 H 1.08002 * 120.89819 * 0.02562 * 24 23 22 45 45 H 1.07996 * 120.02836 * 179.72339 * 25 24 23 46 46 H 1.07994 * 119.14372 * 180.23802 * 26 25 24 47 47 H 1.08001 * 120.22905 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0765 -0.7928 -1.2073 5 7 2.3718 -2.1544 -0.7382 6 6 2.8947 -3.1652 -1.4999 7 1 3.1254 -2.9930 -2.5408 8 6 3.1282 -4.4112 -0.9341 9 7 2.8466 -4.6211 0.3345 10 14 3.8407 -5.7901 -1.9733 11 1 4.0665 -5.3011 -3.3571 12 1 5.1317 -6.2340 -1.3888 13 1 2.8910 -6.9314 -1.9999 14 6 2.0126 -2.2513 0.6884 15 6 2.0791 -0.7955 1.2137 16 1 1.4400 -0.6658 2.0872 17 7 3.4596 -0.4083 1.5144 18 6 3.9683 -0.6264 2.7432 19 8 3.2814 -1.1440 3.6022 20 6 5.3616 -0.2350 3.0469 21 6 6.1503 0.3637 2.0490 22 6 7.4326 0.7309 2.3049 23 6 7.9843 0.5139 3.5792 24 6 9.3112 0.8847 3.8708 25 6 9.7882 0.6403 5.1268 26 6 8.9627 0.0484 6.0817 27 7 7.7283 -0.2948 5.8073 28 6 7.2015 -0.0879 4.5955 29 6 5.8781 -0.4622 4.3107 30 1 -0.3633 0.4626 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0581 33 1 3.1610 1.4062 -0.0581 34 1 1.6751 1.9701 -0.8595 35 1 1.7691 1.9343 0.9177 36 1 2.9874 -0.3226 -1.5778 37 1 1.3288 -0.8278 -1.9998 38 1 3.0094 -5.4919 0.7297 39 1 2.7291 -2.8789 1.2183 40 1 1.0037 -2.6489 0.7994 41 1 4.0076 0.0051 0.8290 42 1 5.7321 0.5327 1.0677 43 1 8.0278 1.1904 1.5296 44 1 9.9361 1.3456 3.1201 45 1 10.8029 0.9085 5.3812 46 1 9.3519 -0.1355 7.0721 47 1 5.2672 -0.9229 5.0730 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977350299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:45 Heat of formation + Delta-G solvation = 49.015187 kcal Electronic energy + Delta-G solvation = -29425.367186 eV Core-core repulsion = 25573.724872 eV Total energy + Delta-G solvation = -3851.642313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.00139 -39.73278 -38.10732 -36.63286 -33.87455 -33.62865 -33.11048 -30.87013 -30.66664 -30.11882 -28.14805 -26.88961 -25.62793 -24.91190 -24.00718 -23.24737 -22.20569 -20.99131 -20.01343 -18.97267 -18.14750 -17.53644 -16.98889 -16.71597 -16.09381 -15.73451 -14.83811 -14.63431 -14.57321 -14.27059 -14.19972 -13.96112 -13.78110 -13.69270 -13.59779 -13.24575 -13.18038 -12.74057 -12.22916 -11.96231 -11.93632 -11.80374 -11.72781 -11.63738 -11.30314 -11.17769 -11.00196 -10.78921 -10.71278 -10.41957 -10.19015 -9.96331 -9.81098 -9.69835 -9.69220 -9.52668 -8.95160 -8.68384 -8.45819 -8.31775 -6.80922 -5.62531 -3.05788 0.15120 0.51644 1.77240 2.46975 3.39884 3.42846 3.44852 3.48143 3.54466 4.06328 4.14907 4.38316 4.48923 4.52247 4.65639 4.77082 4.86795 4.95678 5.02567 5.08609 5.23177 5.27942 5.31434 5.52595 5.60598 5.61865 5.71834 5.74402 5.78527 5.87178 5.90323 6.01562 6.09039 6.14013 6.18840 6.21608 6.24987 6.33958 6.40610 6.48404 6.58915 6.62156 6.69150 6.73559 6.97494 7.49212 7.63066 7.72457 7.87207 7.99413 8.39702 8.64196 9.22442 9.84094 10.47958 11.40063 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010945 B = 0.003447 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.629093 B = 8121.393309 C = 9459.767310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.226 4.226 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.915 5.915 10 Si 0.911 3.089 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.145 3.855 15 C 0.124 3.876 16 H 0.088 0.912 17 N -0.693 5.693 18 C 0.555 3.445 19 O -0.535 6.535 20 C -0.104 4.104 21 C -0.085 4.085 22 C -0.104 4.104 23 C -0.089 4.089 24 C -0.061 4.061 25 C -0.173 4.173 26 C 0.126 3.874 27 N -0.465 5.465 28 C 0.117 3.883 29 C -0.027 4.027 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.020 0.980 37 H 0.024 0.976 38 H 0.252 0.748 39 H 0.114 0.886 40 H 0.022 0.978 41 H 0.395 0.605 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.160 0.840 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.240 16.109 5.551 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.354 4.354 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.020 3.980 15 C 0.018 3.982 16 H 0.106 0.894 17 N -0.344 5.344 18 C 0.341 3.659 19 O -0.413 6.413 20 C -0.109 4.109 21 C -0.103 4.103 22 C -0.123 4.123 23 C -0.091 4.091 24 C -0.087 4.087 25 C -0.193 4.193 26 C -0.048 4.048 27 N -0.173 5.173 28 C -0.003 4.003 29 C -0.047 4.047 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.131 0.869 40 H 0.039 0.961 41 H 0.231 0.769 42 H 0.150 0.850 43 H 0.153 0.847 44 H 0.157 0.843 45 H 0.155 0.845 46 H 0.177 0.823 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.142 15.096 6.721 18.885 hybrid contribution 1.256 -0.262 -1.650 2.090 sum 10.398 14.834 5.071 18.811 Atomic orbital electron populations 1.21683 0.93458 1.02542 1.00907 1.21865 0.96092 0.94515 0.96372 1.21720 1.00256 0.95488 1.01386 1.21428 0.96425 0.86834 0.93639 1.44466 1.74205 1.06676 1.07347 1.19059 1.34204 0.89250 0.92877 0.90540 1.24795 1.01689 0.97625 0.96319 1.69815 1.53514 1.22251 1.10770 0.86055 0.78424 0.82295 0.79037 1.20595 1.21836 1.21752 1.22323 1.00195 0.90408 0.85095 1.22565 0.80969 0.98261 0.96377 0.89364 1.45700 1.14909 1.61727 1.12017 1.18023 0.86021 0.79033 0.82813 1.90773 1.60482 1.43068 1.46937 1.20065 0.95075 1.01341 0.94449 1.21029 0.94086 0.96424 0.98763 1.20843 0.95486 1.00576 0.95345 1.18943 0.94953 0.99962 0.95260 1.21502 0.93858 0.96225 0.97089 1.21930 1.01617 1.01213 0.94514 1.22989 0.89118 0.93080 0.99612 1.68029 1.13440 1.16412 1.19388 1.18766 0.94384 0.97805 0.89348 1.21245 0.92506 0.94723 0.96201 0.93024 0.92686 0.91703 0.93085 0.92656 0.92732 0.96180 0.95814 0.93708 0.86883 0.96054 0.76856 0.85038 0.84712 0.84274 0.84488 0.82316 0.83125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.41 37.16 0.31 -1.60 16 2 C -0.09 -1.42 0.81 -152.61 -0.12 -1.54 16 3 C -0.13 -1.67 8.08 37.16 0.30 -1.37 16 4 C 0.14 2.80 6.41 -3.01 -0.02 2.78 16 5 N -0.60 -14.82 3.39 -170.01 -0.58 -15.40 16 6 C -0.23 -6.17 10.27 -15.06 -0.15 -6.33 16 7 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 8 C -0.01 -0.23 5.49 -17.42 -0.10 -0.33 16 9 N -0.92 -27.17 10.09 55.49 0.56 -26.61 16 10 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 14 C 0.15 3.55 5.27 -2.53 -0.01 3.54 16 15 C 0.12 2.36 2.61 -65.79 -0.17 2.19 16 16 H 0.09 1.73 7.53 -51.93 -0.39 1.34 16 17 N -0.69 -12.17 4.57 -52.66 -0.24 -12.41 16 18 C 0.56 10.38 7.77 -12.32 -0.10 10.29 16 19 O -0.53 -11.85 15.99 5.32 0.09 -11.77 16 20 C -0.10 -1.64 5.87 -105.01 -0.62 -2.26 16 21 C -0.08 -1.07 9.44 -39.57 -0.37 -1.44 16 22 C -0.10 -1.13 9.74 -39.58 -0.39 -1.52 16 23 C -0.09 -1.06 5.75 -106.72 -0.61 -1.68 16 24 C -0.06 -0.54 9.89 -39.21 -0.39 -0.93 16 25 C -0.17 -1.38 10.03 -39.75 -0.40 -1.78 16 26 C 0.13 1.23 11.15 -17.46 -0.19 1.04 16 27 N -0.47 -6.35 10.34 -10.98 -0.11 -6.46 16 28 C 0.12 1.68 6.60 -84.88 -0.56 1.12 16 29 C -0.03 -0.43 9.56 -38.69 -0.37 -0.80 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.10 7.57 -51.93 -0.39 0.71 16 33 H 0.05 0.61 6.42 -51.93 -0.33 0.28 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.02 0.38 7.77 -51.93 -0.40 -0.02 16 37 H 0.02 0.47 7.85 -51.93 -0.41 0.07 16 38 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.11 3.24 5.87 -51.93 -0.30 2.94 16 40 H 0.02 0.57 7.80 -51.93 -0.41 0.16 16 41 H 0.40 6.09 5.01 -40.82 -0.20 5.89 16 42 H 0.13 1.43 6.34 -52.49 -0.33 1.10 16 43 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 44 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 45 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 46 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 47 H 0.15 2.50 7.60 -52.49 -0.40 2.10 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -34.04 379.10 -10.06 -44.10 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.50 Total: 6.24 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -3.96 Total: -0.59 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.37 Total: -60.88 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.04 -10.06 -44.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977350299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.112 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds