Wall clock time and date at job start Tue Mar 31 2020 23:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 110.78037 * 2 1 4 4 C 1.54429 * 110.72339 * 236.70859 * 2 1 3 5 5 N 1.47016 * 107.28159 * 263.84336 * 4 2 1 6 6 C 1.36938 * 125.64829 * 181.09369 * 5 4 2 7 7 H 1.07997 * 120.00192 * 359.97438 * 6 5 4 8 8 C 1.38820 * 120.00105 * 179.97438 * 6 5 4 9 9 N 1.31628 * 119.99717 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00070 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47210 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46743 * 120.00381 * 10 8 6 13 13 H 1.48502 * 109.47084 * 240.00194 * 10 8 6 14 14 C 1.47430 * 108.70387 * 1.06224 * 5 4 2 15 15 C 1.54902 * 104.82974 * 335.86802 * 14 5 4 16 16 H 1.09004 * 111.00459 * 155.11591 * 15 14 5 17 17 N 1.46495 * 111.00624 * 278.93174 * 15 14 5 18 18 C 1.34768 * 120.00468 * 270.41998 * 17 15 14 19 19 O 1.21552 * 119.99724 * 359.97438 * 18 17 15 20 20 C 1.47883 * 120.00525 * 180.02562 * 18 17 15 21 21 C 1.40576 * 119.70301 * 359.97438 * 20 18 17 22 22 C 1.35819 * 120.73512 * 180.02562 * 21 20 18 23 23 C 1.40545 * 119.98106 * 359.97438 * 22 21 20 24 24 C 1.40827 * 121.13346 * 179.97438 * 23 22 21 25 25 C 1.36555 * 118.19689 * 180.30333 * 24 23 22 26 26 C 1.39416 * 119.94018 * 359.50444 * 25 24 23 27 27 N 1.31026 * 121.71101 * 0.48211 * 26 25 24 28 28 C 1.33739 * 121.35158 * 359.77453 * 27 26 25 29 29 C 1.38405 * 119.71283 * 180.02562 * 20 18 17 30 30 H 1.08997 * 109.46993 * 296.75560 * 1 2 3 31 31 H 1.08997 * 109.46989 * 56.75995 * 1 2 3 32 32 H 1.09000 * 109.46655 * 176.75908 * 1 2 3 33 33 H 1.09000 * 109.47181 * 183.24096 * 3 2 1 34 34 H 1.08998 * 109.47306 * 303.24189 * 3 2 1 35 35 H 1.09004 * 109.46449 * 63.23962 * 3 2 1 36 36 H 1.09002 * 109.87613 * 144.42648 * 4 2 1 37 37 H 1.09002 * 110.00842 * 23.33794 * 4 2 1 38 38 H 0.96999 * 119.99478 * 179.97438 * 9 8 6 39 39 H 1.09000 * 110.36784 * 217.02959 * 14 5 4 40 40 H 1.09004 * 110.36313 * 94.70661 * 14 5 4 41 41 H 0.97009 * 119.99733 * 90.42126 * 17 15 14 42 42 H 1.08002 * 119.63488 * 359.97438 * 21 20 18 43 43 H 1.08003 * 120.00710 * 180.02562 * 22 21 20 44 44 H 1.08002 * 120.89819 * 0.02562 * 24 23 22 45 45 H 1.07996 * 120.02836 * 179.72339 * 25 24 23 46 46 H 1.07994 * 119.14372 * 180.23802 * 26 25 24 47 47 H 1.08001 * 120.22905 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0765 -0.7928 -1.2073 5 7 2.3718 -2.1544 -0.7382 6 6 2.8947 -3.1652 -1.4999 7 1 3.1254 -2.9930 -2.5408 8 6 3.1282 -4.4112 -0.9341 9 7 2.8466 -4.6211 0.3345 10 14 3.8407 -5.7901 -1.9733 11 1 4.0665 -5.3011 -3.3571 12 1 5.1317 -6.2340 -1.3888 13 1 2.8910 -6.9314 -1.9999 14 6 2.0126 -2.2513 0.6884 15 6 2.0791 -0.7955 1.2137 16 1 1.4400 -0.6658 2.0872 17 7 3.4596 -0.4083 1.5144 18 6 3.9683 -0.6264 2.7432 19 8 3.2814 -1.1440 3.6022 20 6 5.3616 -0.2350 3.0469 21 6 6.1503 0.3637 2.0490 22 6 7.4326 0.7309 2.3049 23 6 7.9843 0.5139 3.5792 24 6 9.3112 0.8847 3.8708 25 6 9.7882 0.6403 5.1268 26 6 8.9627 0.0484 6.0817 27 7 7.7283 -0.2948 5.8073 28 6 7.2015 -0.0879 4.5955 29 6 5.8781 -0.4622 4.3107 30 1 -0.3633 0.4626 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0581 33 1 3.1610 1.4062 -0.0581 34 1 1.6751 1.9701 -0.8595 35 1 1.7691 1.9343 0.9177 36 1 2.9874 -0.3226 -1.5778 37 1 1.3288 -0.8278 -1.9998 38 1 3.0094 -5.4919 0.7297 39 1 2.7291 -2.8789 1.2183 40 1 1.0037 -2.6489 0.7994 41 1 4.0076 0.0051 0.8290 42 1 5.7321 0.5327 1.0677 43 1 8.0278 1.1904 1.5296 44 1 9.9361 1.3456 3.1201 45 1 10.8029 0.9085 5.3812 46 1 9.3519 -0.1355 7.0721 47 1 5.2672 -0.9229 5.0730 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977350299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:44 Heat of formation + Delta-G solvation = 26.838596 kcal Electronic energy + Delta-G solvation = -29426.328835 eV Core-core repulsion = 25573.724872 eV Total energy + Delta-G solvation = -3852.603963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.97156 -41.13771 -39.56815 -37.70329 -35.71000 -34.63159 -34.47313 -32.60899 -31.82566 -31.04847 -29.77499 -28.08647 -27.42849 -26.10563 -24.88859 -24.76799 -23.18764 -22.47023 -21.66397 -20.36752 -19.31055 -18.72642 -18.51417 -17.92525 -17.25121 -17.13786 -16.60735 -16.03325 -15.67566 -15.50585 -15.48172 -15.27800 -15.18725 -14.84556 -14.64973 -14.57167 -14.18492 -13.91529 -13.74892 -13.67420 -13.04037 -13.01709 -12.95075 -12.90182 -12.73077 -12.64143 -12.59938 -12.49889 -12.06220 -11.79584 -11.77624 -11.55901 -11.46422 -11.36581 -11.08223 -10.77583 -10.49027 -10.08036 -9.80226 -9.34097 -8.84952 -7.75774 -5.20968 -0.77510 -0.36561 0.86992 1.43709 1.44676 1.46661 1.55163 2.07647 2.31448 2.48386 3.08624 3.27531 3.34540 3.52906 3.55105 3.63673 3.70109 3.83149 3.94611 3.96847 4.03905 4.06872 4.08106 4.28184 4.40962 4.50865 4.57422 4.71202 4.72671 4.83861 4.86270 4.88071 4.93044 4.95040 5.03441 5.07695 5.11063 5.18109 5.20252 5.27749 5.30826 5.33942 5.48296 5.50830 5.53249 5.66532 5.78140 5.82356 6.30533 6.53749 6.91495 7.08570 7.19776 7.79169 8.42915 9.24932 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010945 B = 0.003447 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.629093 B = 8121.393309 C = 9459.767310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.125 4.125 4 C 0.137 3.863 5 N -0.617 5.617 6 C -0.229 4.229 7 H 0.087 0.913 8 C -0.070 4.070 9 N -0.950 5.950 10 Si 0.976 3.024 11 H -0.259 1.259 12 H -0.297 1.297 13 H -0.297 1.297 14 C 0.154 3.846 15 C 0.134 3.866 16 H 0.079 0.921 17 N -0.682 5.682 18 C 0.549 3.451 19 O -0.584 6.584 20 C -0.118 4.118 21 C -0.100 4.100 22 C -0.081 4.081 23 C -0.102 4.102 24 C -0.056 4.056 25 C -0.162 4.162 26 C 0.126 3.874 27 N -0.514 5.514 28 C 0.094 3.906 29 C -0.053 4.053 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.028 0.972 38 H 0.241 0.759 39 H 0.067 0.933 40 H -0.014 1.014 41 H 0.408 0.592 42 H 0.150 0.850 43 H 0.181 0.819 44 H 0.182 0.818 45 H 0.182 0.818 46 H 0.189 0.811 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.766 19.689 3.477 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.074 4.074 3 C -0.183 4.183 4 C 0.013 3.987 5 N -0.343 5.343 6 C -0.358 4.358 7 H 0.105 0.895 8 C -0.263 4.263 9 N -0.600 5.600 10 Si 0.805 3.195 11 H -0.183 1.183 12 H -0.225 1.225 13 H -0.225 1.225 14 C 0.027 3.973 15 C 0.028 3.972 16 H 0.097 0.903 17 N -0.332 5.332 18 C 0.337 3.663 19 O -0.465 6.465 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.099 4.099 23 C -0.104 4.104 24 C -0.081 4.081 25 C -0.181 4.181 26 C -0.047 4.047 27 N -0.223 5.223 28 C -0.025 4.025 29 C -0.073 4.073 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.085 0.915 40 H 0.004 0.996 41 H 0.247 0.753 42 H 0.167 0.833 43 H 0.198 0.802 44 H 0.199 0.801 45 H 0.199 0.801 46 H 0.206 0.794 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.677 18.735 4.591 23.082 hybrid contribution 0.293 -1.346 -0.899 1.644 sum 12.970 17.390 3.692 22.006 Atomic orbital electron populations 1.21695 0.92416 1.01260 1.03070 1.21854 0.96895 0.96035 0.92569 1.21706 1.00884 0.92508 1.03162 1.21688 0.97364 0.84665 0.95017 1.44686 1.73927 1.08378 1.07304 1.19493 1.32831 0.89951 0.93496 0.89484 1.25639 1.03023 1.00243 0.97350 1.70142 1.55388 1.21901 1.12619 0.85030 0.76919 0.79081 0.78464 1.18327 1.22450 1.22464 1.21937 0.96715 0.93161 0.85468 1.22242 0.82108 0.95624 0.97230 0.90288 1.45549 1.14407 1.61186 1.12082 1.18645 0.87187 0.77951 0.82487 1.90732 1.62087 1.45304 1.48421 1.19874 0.93633 1.03291 0.95528 1.21163 0.94913 0.97223 0.98566 1.21324 0.94657 0.98159 0.95757 1.19286 0.96384 0.99719 0.95005 1.22013 0.92492 0.95173 0.98458 1.22424 1.03075 0.99048 0.93552 1.23713 0.88049 0.91367 1.01536 1.68000 1.15754 1.18810 1.19731 1.18804 0.93971 0.98981 0.90757 1.21128 0.93861 0.96396 0.95937 0.91371 0.89918 0.94820 0.92101 0.90059 0.91689 0.94302 0.95419 0.94933 0.91545 0.99628 0.75306 0.83261 0.80212 0.80050 0.80050 0.79428 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 8.41 71.98 0.61 -3.03 16 2 C -0.07 -2.27 0.81 -50.95 -0.04 -2.31 16 3 C -0.13 -2.76 8.08 71.98 0.58 -2.18 16 4 C 0.14 5.22 6.41 86.77 0.56 5.78 16 5 N -0.62 -31.18 3.39 -691.78 -2.35 -33.53 16 6 C -0.23 -12.69 10.27 84.04 0.86 -11.83 16 7 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 8 C -0.07 -4.08 5.49 84.86 0.47 -3.62 16 9 N -0.95 -59.98 10.09 21.66 0.22 -59.77 16 10 Si 0.98 46.83 29.55 68.60 2.03 48.86 16 11 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 12 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 13 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 14 C 0.15 8.03 5.27 86.85 0.46 8.49 16 15 C 0.13 5.34 2.61 46.38 0.12 5.46 16 16 H 0.08 3.30 7.53 -2.39 -0.02 3.28 16 17 N -0.68 -24.67 4.57 -438.81 -2.01 -26.68 16 18 C 0.55 22.12 7.77 86.80 0.67 22.80 16 19 O -0.58 -28.66 15.99 -3.88 -0.06 -28.72 16 20 C -0.12 -3.95 5.87 -20.11 -0.12 -4.07 16 21 C -0.10 -2.43 9.44 22.28 0.21 -2.22 16 22 C -0.08 -1.51 9.74 22.27 0.22 -1.29 16 23 C -0.10 -2.19 5.75 -21.23 -0.12 -2.31 16 24 C -0.06 -0.73 9.89 22.51 0.22 -0.50 16 25 C -0.16 -1.84 10.03 22.16 0.22 -1.62 16 26 C 0.13 2.20 11.15 85.10 0.95 3.15 16 27 N -0.51 -14.28 10.34 -188.67 -1.95 -16.23 16 28 C 0.09 2.78 6.60 40.25 0.27 3.05 16 29 C -0.05 -1.85 9.56 22.85 0.22 -1.63 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.03 1.16 7.57 -2.39 -0.02 1.14 16 33 H 0.06 1.23 6.42 -2.39 -0.02 1.22 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.04 1.36 7.77 -2.39 -0.02 1.34 16 37 H 0.03 1.05 7.85 -2.39 -0.02 1.03 16 38 H 0.24 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.07 4.14 5.87 -2.39 -0.01 4.13 16 40 H -0.01 -0.81 7.80 -2.38 -0.02 -0.83 16 41 H 0.41 12.32 5.01 -92.70 -0.46 11.85 16 42 H 0.15 2.93 6.34 -2.91 -0.02 2.92 16 43 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 44 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 45 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 46 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 47 H 0.12 4.68 7.60 -2.91 -0.02 4.66 16 Total: -1.00 -84.12 379.10 2.76 -81.37 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.53 Total: 22.61 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 6.35 Total: 12.10 kcal Atomic # 7 Polarization: -130.12 SS G_CDS: -6.09 Total: -136.20 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.06 Total: -28.72 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -84.12 2.76 -81.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977350299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.204 kcal (2) G-P(sol) polarization free energy of solvation -84.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds