Wall clock time and date at job start Tue Mar 31 2020 23:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.91288 * 2 1 4 4 C 1.54904 * 111.00251 * 236.09649 * 2 1 3 5 5 N 1.47425 * 104.83515 * 278.93453 * 4 2 1 6 6 C 1.36936 * 125.65178 * 155.90790 * 5 4 2 7 7 H 1.08007 * 119.99956 * 359.97438 * 6 5 4 8 8 C 1.38806 * 120.00489 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99579 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00350 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47084 * 60.00250 * 10 8 6 12 12 H 1.48500 * 109.47371 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47428 * 300.00142 * 10 8 6 14 14 C 1.47017 * 108.70205 * 335.87237 * 5 4 2 15 15 C 1.54325 * 107.27191 * 1.06131 * 14 5 4 16 16 H 1.09001 * 110.87436 * 140.62589 * 15 14 5 17 17 N 1.46502 * 110.71857 * 263.83043 * 15 14 5 18 18 C 1.34786 * 119.99907 * 268.52540 * 17 15 14 19 19 O 1.21546 * 119.99820 * 359.97438 * 18 17 15 20 20 C 1.47884 * 120.00291 * 180.02562 * 18 17 15 21 21 C 1.40607 * 119.72873 * 359.97438 * 20 18 17 22 22 C 1.35840 * 120.95385 * 179.97438 * 21 20 18 23 23 C 1.40498 * 119.88074 * 0.02562 * 22 21 20 24 24 C 1.40480 * 121.84188 * 179.97438 * 23 22 21 25 25 N 1.31219 * 119.93824 * 180.02562 * 24 23 22 26 26 C 1.32556 * 122.80726 * 359.97438 * 25 24 23 27 27 C 1.36224 * 121.84079 * 0.02562 * 26 25 24 28 28 C 1.40757 * 118.68110 * 0.02562 * 27 26 25 29 29 C 1.38528 * 119.73254 * 180.24942 * 20 18 17 30 30 H 1.09004 * 109.47415 * 296.09950 * 1 2 3 31 31 H 1.09003 * 109.47235 * 56.09689 * 1 2 3 32 32 H 1.09007 * 109.47473 * 176.09914 * 1 2 3 33 33 H 1.09006 * 109.46815 * 183.90496 * 3 2 1 34 34 H 1.08998 * 109.47281 * 303.89953 * 3 2 1 35 35 H 1.08999 * 109.47452 * 63.90606 * 3 2 1 36 36 H 1.09004 * 110.37007 * 37.77165 * 4 2 1 37 37 H 1.09001 * 110.36639 * 160.09536 * 4 2 1 38 38 H 0.97001 * 119.99733 * 179.97438 * 9 8 6 39 39 H 1.08996 * 109.88607 * 241.63881 * 14 5 4 40 40 H 1.09006 * 109.88265 * 120.47361 * 14 5 4 41 41 H 0.96996 * 120.00300 * 88.51725 * 17 15 14 42 42 H 1.07998 * 119.52001 * 359.97438 * 21 20 18 43 43 H 1.07994 * 120.06432 * 179.97438 * 22 21 20 44 44 H 1.08000 * 120.02998 * 0.03880 * 24 23 22 45 45 H 1.07993 * 119.07936 * 180.02562 * 26 25 24 46 46 H 1.08006 * 120.65772 * 179.97438 * 27 26 25 47 47 H 1.07996 * 120.36107 * 359.76580 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4292 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 2.0138 -2.2159 -0.7733 6 6 1.9460 -3.3000 -1.6071 7 1 1.9412 -3.1584 -2.6778 8 6 1.8822 -4.5810 -1.0763 9 7 1.8864 -4.7536 0.2285 10 14 1.7889 -6.0598 -2.2137 11 1 2.9918 -6.0916 -3.0840 12 1 1.7296 -7.3037 -1.4047 13 1 0.5705 -5.9598 -3.0568 14 6 2.0285 -2.2646 0.6960 15 6 2.0861 -0.8079 1.2022 16 1 1.4540 -0.6767 2.0805 17 7 3.4666 -0.4155 1.4961 18 6 3.9655 -0.5841 2.7369 19 8 3.2698 -1.0612 3.6120 20 6 5.3589 -0.1875 3.0338 21 6 6.1585 0.3644 2.0174 22 6 7.4413 0.7377 2.2627 23 6 7.9847 0.5729 3.5478 24 6 9.3061 0.9442 3.8469 25 7 9.7757 0.7731 5.0602 26 6 9.0529 0.2565 6.0439 27 6 7.7616 -0.1353 5.8576 28 6 7.1871 0.0158 4.5815 29 6 5.8676 -0.3680 4.3096 30 1 -0.3634 0.4521 0.9229 31 1 -0.3634 0.5732 -0.8530 32 1 -0.3634 -1.0253 -0.0699 33 1 3.1636 1.4025 -0.0700 34 1 1.6704 1.9732 -0.8530 35 1 1.7836 1.9300 0.9229 36 1 1.4671 -0.6462 -2.0837 37 1 3.1181 -0.5233 -1.4024 38 1 1.8415 -5.6487 0.5995 39 1 2.9062 -2.8116 1.0401 40 1 1.1218 -2.7480 1.0600 41 1 4.0217 -0.0346 0.7979 42 1 5.7467 0.4932 1.0273 43 1 8.0427 1.1597 1.4712 44 1 9.9348 1.3702 3.0791 45 1 9.5002 0.1431 7.0203 46 1 7.1902 -0.5544 6.6728 47 1 5.2511 -0.7928 5.0880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977418554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:00 Heat of formation + Delta-G solvation = 46.161589 kcal Electronic energy + Delta-G solvation = -29189.227341 eV Core-core repulsion = 25337.461286 eV Total energy + Delta-G solvation = -3851.766055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.09409 -39.85546 -38.22110 -36.93770 -33.99698 -33.34036 -33.02587 -31.46532 -30.71205 -29.84129 -28.17317 -26.91198 -25.67013 -25.04419 -24.00085 -23.32593 -22.42447 -20.97472 -20.09362 -19.02292 -18.17721 -17.75617 -16.81262 -16.71667 -16.25230 -15.70486 -15.16256 -14.92755 -14.60050 -14.33031 -14.12949 -14.03972 -13.88051 -13.78771 -13.74269 -13.30176 -13.02940 -12.70567 -12.47839 -12.27532 -12.01022 -11.99423 -11.70510 -11.40733 -11.31309 -11.10530 -11.01083 -10.77776 -10.48367 -10.44226 -10.30897 -10.05668 -9.91438 -9.85849 -9.66838 -9.62368 -9.30520 -8.65671 -8.51459 -8.31663 -6.84856 -5.70436 -3.05509 0.01883 0.48154 1.63516 2.44883 3.33894 3.39824 3.43463 3.44203 3.46098 3.90933 4.13785 4.27646 4.47231 4.49125 4.52341 4.70246 4.78483 4.89398 4.95894 5.02395 5.23702 5.26929 5.34089 5.44292 5.48421 5.51893 5.61043 5.69551 5.76799 5.80256 5.88914 5.98488 6.04750 6.08141 6.13546 6.17073 6.21413 6.34903 6.35772 6.49095 6.54821 6.57288 6.63932 6.67646 6.91175 7.52661 7.60400 7.69169 7.77199 7.86237 8.24036 8.47502 9.20471 9.81270 10.46324 11.40096 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.002934 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.905372 B = 9541.827449 C =10497.244547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.006 4.006 9 N -0.918 5.918 10 Si 0.911 3.089 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.175 3.825 15 C 0.123 3.877 16 H 0.091 0.909 17 N -0.700 5.700 18 C 0.552 3.448 19 O -0.534 6.534 20 C -0.102 4.102 21 C -0.091 4.091 22 C -0.092 4.092 23 C -0.099 4.099 24 C 0.143 3.857 25 N -0.486 5.486 26 C 0.069 3.931 27 C -0.143 4.143 28 C -0.034 4.034 29 C -0.047 4.047 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.014 0.986 38 H 0.253 0.747 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.395 0.605 42 H 0.131 0.869 43 H 0.139 0.861 44 H 0.165 0.835 45 H 0.154 0.846 46 H 0.141 0.859 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.965 15.360 6.216 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.188 4.188 4 C 0.017 3.983 5 N -0.328 5.328 6 C -0.359 4.359 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.049 3.951 15 C 0.018 3.982 16 H 0.109 0.891 17 N -0.351 5.351 18 C 0.338 3.662 19 O -0.412 6.412 20 C -0.107 4.107 21 C -0.109 4.109 22 C -0.112 4.112 23 C -0.102 4.102 24 C -0.029 4.029 25 N -0.194 5.194 26 C -0.074 4.074 27 C -0.163 4.163 28 C -0.039 4.039 29 C -0.066 4.066 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.032 0.968 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.231 0.769 42 H 0.149 0.851 43 H 0.157 0.843 44 H 0.182 0.818 45 H 0.171 0.829 46 H 0.159 0.841 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.261 14.946 7.194 19.505 hybrid contribution -0.610 -1.051 -1.156 1.677 sum 9.651 13.896 6.038 17.963 Atomic orbital electron populations 1.21601 0.93200 1.03000 1.00559 1.22024 0.96447 0.94107 0.96556 1.21676 1.00109 0.95622 1.01434 1.21636 0.96500 0.85798 0.94380 1.44422 1.86959 0.99691 1.01773 1.18965 1.44150 0.83967 0.88856 0.90530 1.24809 1.02140 0.97389 0.95959 1.69948 1.56472 1.20953 1.09160 0.86220 0.77844 0.82333 0.79447 1.21253 1.21634 1.21194 1.21532 1.01715 0.88385 0.83430 1.22552 0.80696 0.97664 0.97274 0.89086 1.45933 1.15032 1.63399 1.10745 1.18132 0.86232 0.78843 0.82981 1.90778 1.60003 1.44251 1.46192 1.20177 0.94771 1.01128 0.94619 1.21027 0.94124 0.97009 0.98786 1.20861 0.95397 0.99548 0.95392 1.19149 0.95808 1.00523 0.94680 1.23233 0.91614 0.94250 0.93808 1.67380 1.38361 1.12834 1.00854 1.22175 0.91282 0.95823 0.98076 1.22011 0.96935 1.00686 0.96639 1.18151 0.94056 0.97898 0.93762 1.21445 0.93288 0.95315 0.96525 0.93312 0.92843 0.91144 0.93213 0.92569 0.92815 0.94014 0.96806 0.93631 0.93371 0.92693 0.76861 0.85095 0.84324 0.81829 0.82898 0.84101 0.83510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.57 37.16 0.32 -1.63 16 2 C -0.09 -1.43 0.83 -152.37 -0.13 -1.56 16 3 C -0.13 -1.60 8.22 37.16 0.31 -1.30 16 4 C 0.14 2.73 6.12 -2.53 -0.02 2.72 16 5 N -0.60 -14.66 3.38 -170.08 -0.57 -15.24 16 6 C -0.23 -6.28 10.28 -15.06 -0.15 -6.43 16 7 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 8 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 9 N -0.92 -27.09 10.31 55.49 0.57 -26.52 16 10 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.17 4.21 4.79 -3.07 -0.01 4.19 16 15 C 0.12 2.27 2.59 -66.10 -0.17 2.10 16 16 H 0.09 1.76 7.45 -51.93 -0.39 1.37 16 17 N -0.70 -11.31 4.40 -52.96 -0.23 -11.54 16 18 C 0.55 9.37 7.77 -12.31 -0.10 9.28 16 19 O -0.53 -10.97 15.95 5.33 0.08 -10.89 16 20 C -0.10 -1.40 5.87 -104.95 -0.62 -2.02 16 21 C -0.09 -0.99 9.44 -39.55 -0.37 -1.37 16 22 C -0.09 -0.86 9.77 -39.59 -0.39 -1.24 16 23 C -0.10 -1.05 5.75 -106.78 -0.61 -1.66 16 24 C 0.14 1.35 11.04 -16.97 -0.19 1.17 16 25 N -0.49 -5.26 10.29 -13.15 -0.14 -5.40 16 26 C 0.07 0.66 11.07 -17.96 -0.20 0.47 16 27 C -0.14 -1.40 9.88 -39.35 -0.39 -1.79 16 28 C -0.03 -0.39 5.74 -106.83 -0.61 -1.00 16 29 C -0.05 -0.60 9.38 -38.78 -0.36 -0.97 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.30 7.91 -51.93 -0.41 0.89 16 33 H 0.05 0.55 6.48 -51.93 -0.34 0.22 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 37 H 0.01 0.26 7.98 -51.93 -0.41 -0.15 16 38 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.05 1.34 7.41 -51.93 -0.38 0.95 16 40 H 0.06 1.50 7.38 -51.93 -0.38 1.12 16 41 H 0.40 5.44 5.09 -40.82 -0.21 5.23 16 42 H 0.13 1.20 6.34 -52.49 -0.33 0.87 16 43 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 47 H 0.15 1.88 7.62 -52.49 -0.40 1.48 16 LS Contribution 380.46 15.07 5.73 5.73 Total: -1.00 -33.52 380.46 -9.97 -43.49 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.60 Total: 4.66 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -3.79 Total: -1.33 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.37 Total: -58.70 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.52 -9.97 -43.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977418554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.656 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds