Wall clock time and date at job start Tue Mar 31 2020 23:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.91288 * 2 1 4 4 C 1.54904 * 111.00251 * 236.09649 * 2 1 3 5 5 N 1.47425 * 104.83515 * 278.93453 * 4 2 1 6 6 C 1.36936 * 125.65178 * 155.90790 * 5 4 2 7 7 H 1.08007 * 119.99956 * 359.97438 * 6 5 4 8 8 C 1.38806 * 120.00489 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99579 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00350 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47084 * 60.00250 * 10 8 6 12 12 H 1.48500 * 109.47371 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47428 * 300.00142 * 10 8 6 14 14 C 1.47017 * 108.70205 * 335.87237 * 5 4 2 15 15 C 1.54325 * 107.27191 * 1.06131 * 14 5 4 16 16 H 1.09001 * 110.87436 * 140.62589 * 15 14 5 17 17 N 1.46502 * 110.71857 * 263.83043 * 15 14 5 18 18 C 1.34786 * 119.99907 * 268.52540 * 17 15 14 19 19 O 1.21546 * 119.99820 * 359.97438 * 18 17 15 20 20 C 1.47884 * 120.00291 * 180.02562 * 18 17 15 21 21 C 1.40607 * 119.72873 * 359.97438 * 20 18 17 22 22 C 1.35840 * 120.95385 * 179.97438 * 21 20 18 23 23 C 1.40498 * 119.88074 * 0.02562 * 22 21 20 24 24 C 1.40480 * 121.84188 * 179.97438 * 23 22 21 25 25 N 1.31219 * 119.93824 * 180.02562 * 24 23 22 26 26 C 1.32556 * 122.80726 * 359.97438 * 25 24 23 27 27 C 1.36224 * 121.84079 * 0.02562 * 26 25 24 28 28 C 1.40757 * 118.68110 * 0.02562 * 27 26 25 29 29 C 1.38528 * 119.73254 * 180.24942 * 20 18 17 30 30 H 1.09004 * 109.47415 * 296.09950 * 1 2 3 31 31 H 1.09003 * 109.47235 * 56.09689 * 1 2 3 32 32 H 1.09007 * 109.47473 * 176.09914 * 1 2 3 33 33 H 1.09006 * 109.46815 * 183.90496 * 3 2 1 34 34 H 1.08998 * 109.47281 * 303.89953 * 3 2 1 35 35 H 1.08999 * 109.47452 * 63.90606 * 3 2 1 36 36 H 1.09004 * 110.37007 * 37.77165 * 4 2 1 37 37 H 1.09001 * 110.36639 * 160.09536 * 4 2 1 38 38 H 0.97001 * 119.99733 * 179.97438 * 9 8 6 39 39 H 1.08996 * 109.88607 * 241.63881 * 14 5 4 40 40 H 1.09006 * 109.88265 * 120.47361 * 14 5 4 41 41 H 0.96996 * 120.00300 * 88.51725 * 17 15 14 42 42 H 1.07998 * 119.52001 * 359.97438 * 21 20 18 43 43 H 1.07994 * 120.06432 * 179.97438 * 22 21 20 44 44 H 1.08000 * 120.02998 * 0.03880 * 24 23 22 45 45 H 1.07993 * 119.07936 * 180.02562 * 26 25 24 46 46 H 1.08006 * 120.65772 * 179.97438 * 27 26 25 47 47 H 1.07996 * 120.36107 * 359.76580 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4292 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 2.0138 -2.2159 -0.7733 6 6 1.9460 -3.3000 -1.6071 7 1 1.9412 -3.1584 -2.6778 8 6 1.8822 -4.5810 -1.0763 9 7 1.8864 -4.7536 0.2285 10 14 1.7889 -6.0598 -2.2137 11 1 2.9918 -6.0916 -3.0840 12 1 1.7296 -7.3037 -1.4047 13 1 0.5705 -5.9598 -3.0568 14 6 2.0285 -2.2646 0.6960 15 6 2.0861 -0.8079 1.2022 16 1 1.4540 -0.6767 2.0805 17 7 3.4666 -0.4155 1.4961 18 6 3.9655 -0.5841 2.7369 19 8 3.2698 -1.0612 3.6120 20 6 5.3589 -0.1875 3.0338 21 6 6.1585 0.3644 2.0174 22 6 7.4413 0.7377 2.2627 23 6 7.9847 0.5729 3.5478 24 6 9.3061 0.9442 3.8469 25 7 9.7757 0.7731 5.0602 26 6 9.0529 0.2565 6.0439 27 6 7.7616 -0.1353 5.8576 28 6 7.1871 0.0158 4.5815 29 6 5.8676 -0.3680 4.3096 30 1 -0.3634 0.4521 0.9229 31 1 -0.3634 0.5732 -0.8530 32 1 -0.3634 -1.0253 -0.0699 33 1 3.1636 1.4025 -0.0700 34 1 1.6704 1.9732 -0.8530 35 1 1.7836 1.9300 0.9229 36 1 1.4671 -0.6462 -2.0837 37 1 3.1181 -0.5233 -1.4024 38 1 1.8415 -5.6487 0.5995 39 1 2.9062 -2.8116 1.0401 40 1 1.1218 -2.7480 1.0600 41 1 4.0217 -0.0346 0.7979 42 1 5.7467 0.4932 1.0273 43 1 8.0427 1.1597 1.4712 44 1 9.9348 1.3702 3.0791 45 1 9.5002 0.1431 7.0203 46 1 7.1902 -0.5544 6.6728 47 1 5.2511 -0.7928 5.0880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977418554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:59 Heat of formation + Delta-G solvation = 25.199495 kcal Electronic energy + Delta-G solvation = -29190.136326 eV Core-core repulsion = 25337.461286 eV Total energy + Delta-G solvation = -3852.675039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.98919 -41.16797 -39.60576 -37.93134 -35.74432 -34.67145 -33.98017 -32.61320 -32.40044 -30.63950 -29.79989 -28.10687 -27.43307 -26.19824 -24.83791 -24.79336 -23.29736 -22.40697 -21.71416 -20.36534 -19.25635 -18.73906 -18.61178 -17.76941 -17.26537 -17.04144 -16.65570 -16.01683 -15.93016 -15.69921 -15.48251 -15.32010 -15.13278 -14.80729 -14.66043 -14.61870 -14.02950 -13.88760 -13.77811 -13.48589 -13.40784 -13.15287 -13.07019 -12.94217 -12.81445 -12.64726 -12.58596 -12.18311 -12.11217 -11.86276 -11.75597 -11.54878 -11.32125 -11.26497 -11.15039 -10.73187 -10.52507 -10.27460 -9.97461 -9.12283 -8.88881 -7.83259 -5.19766 -0.83477 -0.34896 0.80811 1.43980 1.47177 1.47539 1.53731 2.05932 2.33655 2.49372 3.05542 3.35045 3.44555 3.49143 3.52665 3.55805 3.71517 3.75321 3.83221 3.96226 3.99087 4.07169 4.07612 4.28006 4.39626 4.50989 4.58594 4.63863 4.70820 4.75344 4.85286 4.88786 4.92327 4.95812 5.02721 5.04532 5.12561 5.16941 5.20810 5.25201 5.28500 5.35733 5.46394 5.56297 5.60300 5.68835 5.72065 5.73401 6.17587 6.49587 6.95562 7.07770 7.15970 7.78342 8.42421 9.25700 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.002934 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.905372 B = 9541.827449 C =10497.244547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 C -0.124 4.124 4 C 0.137 3.863 5 N -0.619 5.619 6 C -0.235 4.235 7 H 0.088 0.912 8 C -0.070 4.070 9 N -0.954 5.954 10 Si 0.977 3.023 11 H -0.275 1.275 12 H -0.301 1.301 13 H -0.275 1.275 14 C 0.193 3.807 15 C 0.136 3.864 16 H 0.079 0.921 17 N -0.689 5.689 18 C 0.548 3.452 19 O -0.582 6.582 20 C -0.118 4.118 21 C -0.102 4.102 22 C -0.071 4.071 23 C -0.110 4.110 24 C 0.149 3.851 25 N -0.506 5.506 26 C 0.068 3.932 27 C -0.154 4.154 28 C -0.049 4.049 29 C -0.060 4.060 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.029 0.971 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.034 0.966 38 H 0.242 0.758 39 H 0.000 1.000 40 H 0.006 0.994 41 H 0.410 0.590 42 H 0.150 0.850 43 H 0.182 0.818 44 H 0.201 0.799 45 H 0.177 0.823 46 H 0.155 0.845 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.164 18.437 4.225 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.076 4.076 3 C -0.182 4.182 4 C 0.012 3.988 5 N -0.345 5.345 6 C -0.364 4.364 7 H 0.106 0.894 8 C -0.263 4.263 9 N -0.603 5.603 10 Si 0.805 3.195 11 H -0.201 1.201 12 H -0.228 1.228 13 H -0.201 1.201 14 C 0.066 3.934 15 C 0.030 3.970 16 H 0.097 0.903 17 N -0.340 5.340 18 C 0.336 3.664 19 O -0.463 6.463 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.090 4.090 23 C -0.112 4.112 24 C -0.023 4.023 25 N -0.214 5.214 26 C -0.074 4.074 27 C -0.174 4.174 28 C -0.054 4.054 29 C -0.079 4.079 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.018 0.982 40 H 0.024 0.976 41 H 0.249 0.751 42 H 0.168 0.832 43 H 0.199 0.801 44 H 0.217 0.783 45 H 0.194 0.806 46 H 0.172 0.828 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.483 18.085 5.154 22.571 hybrid contribution -1.221 -1.975 -0.503 2.376 sum 11.262 16.110 4.651 20.199 Atomic orbital electron populations 1.21601 0.92879 1.01085 1.02636 1.21996 0.96675 0.95906 0.92990 1.21658 1.01093 0.92348 1.03068 1.21921 0.97848 0.83172 0.95815 1.44659 1.86623 1.01638 1.01610 1.19435 1.42220 0.84977 0.89789 0.89417 1.25672 1.03004 1.00393 0.97238 1.70230 1.58492 1.20479 1.11105 0.85170 0.78353 0.78403 0.77526 1.20099 1.22780 1.20111 1.21084 0.97165 0.91311 0.83832 1.22140 0.82263 0.94788 0.97816 0.90316 1.45723 1.14211 1.62980 1.11116 1.18753 0.87435 0.77678 0.82495 1.90746 1.61595 1.46377 1.47583 1.20009 0.93136 1.03116 0.95947 1.21183 0.94708 0.97460 0.98727 1.21294 0.94722 0.97287 0.95728 1.19460 0.96362 1.00409 0.95014 1.23818 0.91325 0.92976 0.94147 1.67467 1.38864 1.13512 1.01602 1.22587 0.91045 0.94766 0.98974 1.22214 0.97420 1.01120 0.96608 1.18334 0.93556 0.98368 0.95134 1.21425 0.94187 0.96066 0.96235 0.91723 0.90175 0.95143 0.91642 0.90143 0.91885 0.93192 0.94786 0.94854 0.98224 0.97592 0.75111 0.83198 0.80051 0.78251 0.80564 0.82752 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.72 8.57 71.98 0.62 -3.10 16 2 C -0.07 -2.26 0.83 -50.79 -0.04 -2.30 16 3 C -0.12 -2.55 8.22 71.98 0.59 -1.96 16 4 C 0.14 5.02 6.12 86.85 0.53 5.55 16 5 N -0.62 -30.86 3.38 -692.00 -2.34 -33.20 16 6 C -0.24 -12.99 10.28 84.03 0.86 -12.13 16 7 H 0.09 4.54 7.83 -2.91 -0.02 4.52 16 8 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 9 N -0.95 -59.81 10.31 21.65 0.22 -59.59 16 10 Si 0.98 46.48 29.55 68.60 2.03 48.50 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 C 0.19 9.88 4.79 86.73 0.42 10.30 16 15 C 0.14 5.18 2.59 46.18 0.12 5.30 16 16 H 0.08 3.22 7.45 -2.39 -0.02 3.20 16 17 N -0.69 -22.34 4.40 -439.73 -1.94 -24.28 16 18 C 0.55 19.39 7.77 86.80 0.67 20.07 16 19 O -0.58 -25.71 15.95 -3.86 -0.06 -25.77 16 20 C -0.12 -3.26 5.87 -20.08 -0.12 -3.38 16 21 C -0.10 -2.01 9.44 22.29 0.21 -1.80 16 22 C -0.07 -1.07 9.77 22.26 0.22 -0.85 16 23 C -0.11 -2.05 5.75 -21.26 -0.12 -2.17 16 24 C 0.15 2.33 11.04 85.33 0.94 3.27 16 25 N -0.51 -9.70 10.29 -195.51 -2.01 -11.71 16 26 C 0.07 1.20 11.07 84.11 0.93 2.13 16 27 C -0.15 -2.93 9.88 22.42 0.22 -2.71 16 28 C -0.05 -1.11 5.74 -21.29 -0.12 -1.23 16 29 C -0.06 -1.61 9.38 22.79 0.21 -1.40 16 30 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 32 H 0.03 1.14 7.91 -2.38 -0.02 1.12 16 33 H 0.06 1.16 6.48 -2.38 -0.02 1.14 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.05 1.77 8.05 -2.38 -0.02 1.75 16 37 H 0.03 1.15 7.98 -2.39 -0.02 1.13 16 38 H 0.24 15.04 8.31 -92.71 -0.77 14.27 16 39 H 0.00 -0.03 7.41 -2.39 -0.02 -0.04 16 40 H 0.01 0.36 7.38 -2.38 -0.02 0.34 16 41 H 0.41 10.59 5.09 -92.71 -0.47 10.12 16 42 H 0.15 2.26 6.34 -2.91 -0.02 2.25 16 43 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 44 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 45 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 46 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 47 H 0.13 3.78 7.62 -2.91 -0.02 3.76 16 Total: -1.00 -79.96 380.46 3.03 -76.93 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.52 Total: 19.13 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 6.61 Total: 9.98 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -6.06 Total: -128.78 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.06 Total: -25.77 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -79.96 3.03 -76.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977418554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.134 kcal (2) G-P(sol) polarization free energy of solvation -79.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds