Wall clock time and date at job start Tue Mar 31 2020 23:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 110.88518 * 2 1 4 4 C 1.54913 * 111.00777 * 123.88046 * 2 1 3 5 5 N 1.47427 * 104.82993 * 81.06676 * 4 2 1 6 6 C 1.36939 * 125.64745 * 203.85996 * 5 4 2 7 7 H 1.07996 * 119.99478 * 0.02562 * 6 5 4 8 8 C 1.38809 * 119.99756 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00322 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99722 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47332 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47410 * 119.99874 * 10 8 6 13 13 H 1.48503 * 109.46805 * 239.99932 * 10 8 6 14 14 C 1.47029 * 108.70410 * 24.12932 * 5 4 2 15 15 C 1.54323 * 107.26882 * 358.93911 * 14 5 4 16 16 H 1.08998 * 110.87288 * 219.37438 * 15 14 5 17 17 N 1.46502 * 110.72109 * 96.17135 * 15 14 5 18 18 C 1.34778 * 119.99907 * 91.47223 * 17 15 14 19 19 O 1.21585 * 120.00422 * 0.02562 * 18 17 15 20 20 C 1.47569 * 119.99961 * 179.97438 * 18 17 15 21 21 C 1.38712 * 120.43418 * 354.13421 * 20 18 17 22 22 C 1.39001 * 120.75199 * 179.67447 * 21 20 18 23 23 C 1.36345 * 121.18488 * 0.62323 * 22 21 20 24 24 C 1.40347 * 119.93423 * 359.68132 * 23 22 21 25 25 C 1.40682 * 122.10262 * 180.02562 * 24 23 22 26 26 C 1.36257 * 118.66911 * 180.02562 * 25 24 23 27 27 N 1.32509 * 121.84030 * 359.95100 * 26 25 24 28 28 C 1.31318 * 122.72025 * 0.02718 * 27 26 25 29 29 C 1.40132 * 119.91821 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.47161 * 297.56566 * 1 2 3 31 31 H 1.08997 * 109.47609 * 57.57205 * 1 2 3 32 32 H 1.09001 * 109.47033 * 177.57334 * 1 2 3 33 33 H 1.08999 * 109.46994 * 182.43000 * 3 2 1 34 34 H 1.09000 * 109.47147 * 302.43124 * 3 2 1 35 35 H 1.09000 * 109.46410 * 62.42832 * 3 2 1 36 36 H 1.08996 * 110.36598 * 322.22762 * 4 2 1 37 37 H 1.08997 * 110.45876 * 199.95143 * 4 2 1 38 38 H 0.97001 * 119.99813 * 179.97438 * 9 8 6 39 39 H 1.09001 * 109.87875 * 118.35645 * 14 5 4 40 40 H 1.08997 * 109.87998 * 239.52278 * 14 5 4 41 41 H 0.96998 * 120.00336 * 271.47949 * 17 15 14 42 42 H 1.08003 * 119.62029 * 359.96756 * 21 20 18 43 43 H 1.07998 * 119.40499 * 180.30740 * 22 21 20 44 44 H 1.08007 * 120.02604 * 179.70208 * 23 22 21 45 45 H 1.08001 * 120.66317 * 359.96996 * 25 24 23 46 46 H 1.08004 * 119.08286 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.04192 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4296 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 2.0140 -2.2156 0.7741 6 6 1.9507 -3.2997 1.6084 7 1 1.9500 -3.1577 2.6789 8 6 1.8875 -4.5808 1.0779 9 7 1.8878 -4.7537 -0.2269 10 14 1.8004 -6.0596 2.2160 11 1 1.8140 -5.5992 3.6277 12 1 0.5486 -6.8138 1.9528 13 1 2.9702 -6.9414 1.9721 14 6 2.0286 -2.2649 -0.6953 15 6 2.0861 -0.8083 -1.2020 16 1 1.4540 -0.6774 -2.0802 17 7 3.4666 -0.4159 -1.4961 18 6 3.9654 -0.5848 -2.7368 19 8 3.2696 -1.0624 -3.6120 20 6 5.3558 -0.1891 -3.0332 21 6 6.1182 0.4676 -2.0785 22 6 7.4307 0.8374 -2.3483 23 6 8.0025 0.5785 -3.5586 24 6 7.2648 -0.0785 -4.5555 25 6 7.8094 -0.3689 -5.8197 26 6 7.0301 -1.0092 -6.7358 27 7 5.7819 -1.3630 -6.4664 28 6 5.2106 -1.1241 -5.3084 29 6 5.9271 -0.4700 -4.2973 30 1 -0.3633 0.4755 0.9110 31 1 -0.3634 0.5510 -0.8674 32 1 -0.3633 -1.0268 -0.0435 33 1 3.1642 1.4030 -0.0436 34 1 1.6901 1.9655 -0.8674 35 1 1.7605 1.9385 0.9110 36 1 1.4673 -0.6454 2.0839 37 1 3.1180 -0.5233 1.4044 38 1 1.8440 -5.6491 -0.5975 39 1 2.9065 -2.8119 -1.0391 40 1 1.1220 -2.7483 -1.0590 41 1 4.0217 -0.0347 -0.7980 42 1 5.6886 0.6899 -1.1128 43 1 8.0061 1.3434 -1.5872 44 1 9.0223 0.8785 -3.7498 45 1 8.8246 -0.0890 -6.0596 46 1 7.4414 -1.2350 -7.7087 47 1 4.1900 -1.4321 -5.1353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977427562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:20 Heat of formation + Delta-G solvation = 54.019347 kcal Electronic energy + Delta-G solvation = -29701.550789 eV Core-core repulsion = 25850.125472 eV Total energy + Delta-G solvation = -3851.425317 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.12728 -39.68886 -38.04494 -37.22035 -34.01191 -33.25190 -32.88415 -31.27672 -30.73072 -29.93453 -28.03501 -26.85133 -25.66488 -24.78590 -23.81799 -23.55324 -22.77511 -20.70768 -20.09858 -18.90129 -18.02327 -17.70480 -16.80786 -16.69348 -16.23306 -15.74609 -15.11541 -14.98533 -14.75014 -14.46285 -14.00438 -13.96073 -13.87708 -13.70828 -13.42439 -13.29091 -12.79494 -12.53543 -12.23735 -12.20458 -12.04894 -12.03213 -11.74187 -11.66465 -11.41031 -11.11386 -11.01633 -10.80496 -10.40323 -10.30816 -10.21673 -10.05867 -9.89499 -9.68542 -9.65503 -9.30995 -9.27859 -8.67956 -8.57560 -8.17793 -6.84541 -5.70526 -3.05471 0.01327 0.76501 1.57303 2.68328 3.26479 3.39227 3.39981 3.44897 3.47961 4.05640 4.37930 4.44037 4.49076 4.56061 4.64992 4.77700 4.80907 4.91002 4.93976 5.14917 5.23129 5.26099 5.43612 5.51932 5.57902 5.60050 5.60922 5.76358 5.80423 5.87176 5.94427 5.98672 6.01553 6.13003 6.14570 6.17029 6.19250 6.34759 6.50945 6.53435 6.56624 6.61104 6.64141 6.77619 6.90746 7.52545 7.60020 7.74570 7.84919 8.00992 8.24043 8.44101 9.20714 9.81424 10.46199 11.40265 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.003415 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.069291 B = 8197.933331 C = 9115.937299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.231 4.231 7 H 0.078 0.922 8 C -0.006 4.006 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.291 1.291 14 C 0.175 3.825 15 C 0.122 3.878 16 H 0.094 0.906 17 N -0.697 5.697 18 C 0.557 3.443 19 O -0.531 6.531 20 C -0.089 4.089 21 C -0.084 4.084 22 C -0.104 4.104 23 C -0.093 4.093 24 C -0.029 4.029 25 C -0.168 4.168 26 C 0.078 3.922 27 N -0.492 5.492 28 C 0.151 3.849 29 C -0.080 4.080 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.014 0.986 38 H 0.253 0.747 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.396 0.604 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.151 0.849 47 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.466 15.770 -5.542 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.359 4.359 7 H 0.096 0.904 8 C -0.202 4.202 9 N -0.565 5.565 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.218 1.218 14 C 0.049 3.951 15 C 0.017 3.983 16 H 0.112 0.888 17 N -0.347 5.347 18 C 0.344 3.656 19 O -0.410 6.410 20 C -0.094 4.094 21 C -0.103 4.103 22 C -0.123 4.123 23 C -0.111 4.111 24 C -0.035 4.035 25 C -0.188 4.188 26 C -0.065 4.065 27 N -0.200 5.200 28 C -0.019 4.019 29 C -0.083 4.083 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.032 0.968 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.232 0.768 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.154 0.846 46 H 0.168 0.832 47 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 9.566 14.753 -6.906 18.890 hybrid contribution 1.025 -0.266 1.657 1.967 sum 10.591 14.487 -5.249 18.697 Atomic orbital electron populations 1.21590 0.93143 1.02929 1.00635 1.22025 0.96491 0.94078 0.96510 1.21687 1.00076 0.95642 1.01499 1.21630 0.96507 0.85816 0.94363 1.44441 1.86977 0.99685 1.01788 1.19057 1.43990 0.83945 0.88903 0.90427 1.24801 1.02130 0.97373 0.95941 1.69958 1.56590 1.20775 1.09156 0.86082 0.77280 0.83033 0.79562 1.20567 1.21732 1.21836 1.21540 1.01801 0.88301 0.83434 1.22582 0.80523 0.97718 0.97454 0.88841 1.45948 1.15145 1.63035 1.10575 1.17981 0.85935 0.78689 0.83004 1.90565 1.60012 1.44972 1.45470 1.20032 0.94609 1.00643 0.94094 1.21441 0.94179 0.96116 0.98532 1.20892 0.94824 0.99390 0.97238 1.21117 0.99724 0.97476 0.92831 1.18157 0.93041 0.97409 0.94846 1.21835 1.01307 1.02160 0.93475 1.22322 0.90093 0.94708 0.99418 1.67700 1.11643 1.18551 1.22106 1.24718 1.01584 0.89435 0.86145 1.18876 0.94147 1.00339 0.94954 0.92783 0.93317 0.91198 0.93260 0.92754 0.92541 0.94025 0.96845 0.93680 0.93309 0.92581 0.76776 0.85033 0.84859 0.84858 0.84583 0.83200 0.78116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.61 37.16 0.32 -1.60 16 2 C -0.09 -1.41 0.83 -152.36 -0.13 -1.53 16 3 C -0.13 -1.58 8.35 37.16 0.31 -1.27 16 4 C 0.14 2.71 6.12 -2.53 -0.02 2.69 16 5 N -0.60 -14.59 3.38 -170.07 -0.58 -15.16 16 6 C -0.23 -6.26 10.28 -15.06 -0.15 -6.41 16 7 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 8 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 9 N -0.92 -27.06 10.31 55.49 0.57 -26.49 16 10 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 14 C 0.17 4.16 4.73 -3.06 -0.01 4.14 16 15 C 0.12 2.21 2.59 -66.10 -0.17 2.04 16 16 H 0.09 1.76 7.45 -51.93 -0.39 1.37 16 17 N -0.70 -11.04 4.36 -53.06 -0.23 -11.27 16 18 C 0.56 9.34 7.73 -12.45 -0.10 9.24 16 19 O -0.53 -10.42 13.11 5.29 0.07 -10.35 16 20 C -0.09 -1.26 5.90 -104.66 -0.62 -1.88 16 21 C -0.08 -0.91 9.51 -39.12 -0.37 -1.29 16 22 C -0.10 -0.94 9.93 -39.98 -0.40 -1.33 16 23 C -0.09 -0.87 9.79 -39.47 -0.39 -1.26 16 24 C -0.03 -0.36 5.74 -106.84 -0.61 -0.97 16 25 C -0.17 -1.79 9.88 -39.37 -0.39 -2.18 16 26 C 0.08 0.94 11.07 -17.97 -0.20 0.74 16 27 N -0.49 -7.58 10.30 -13.22 -0.14 -7.72 16 28 C 0.15 2.44 10.49 -17.06 -0.18 2.26 16 29 C -0.08 -1.18 5.76 -106.59 -0.61 -1.80 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.27 7.81 -51.93 -0.41 0.87 16 33 H 0.05 0.54 6.27 -51.93 -0.33 0.21 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 37 H 0.01 0.25 8.04 -51.93 -0.42 -0.17 16 38 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.05 1.34 7.41 -51.93 -0.38 0.96 16 40 H 0.06 1.52 7.38 -51.93 -0.38 1.13 16 41 H 0.40 5.35 5.12 -40.82 -0.21 5.14 16 42 H 0.13 1.16 6.42 -52.48 -0.34 0.82 16 43 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 44 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 45 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.15 1.34 8.06 -52.48 -0.42 0.91 16 47 H 0.20 3.57 4.97 -52.49 -0.26 3.31 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -32.83 375.03 -9.94 -42.78 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.46 Total: 6.18 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -3.81 Total: -0.65 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -0.37 Total: -60.64 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.83 -9.94 -42.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977427562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.795 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds