Wall clock time and date at job start Tue Mar 31 2020 23:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 110.88518 * 2 1 4 4 C 1.54913 * 111.00777 * 123.88046 * 2 1 3 5 5 N 1.47427 * 104.82993 * 81.06676 * 4 2 1 6 6 C 1.36939 * 125.64745 * 203.85996 * 5 4 2 7 7 H 1.07996 * 119.99478 * 0.02562 * 6 5 4 8 8 C 1.38809 * 119.99756 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00322 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99722 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47332 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47410 * 119.99874 * 10 8 6 13 13 H 1.48503 * 109.46805 * 239.99932 * 10 8 6 14 14 C 1.47029 * 108.70410 * 24.12932 * 5 4 2 15 15 C 1.54323 * 107.26882 * 358.93911 * 14 5 4 16 16 H 1.08998 * 110.87288 * 219.37438 * 15 14 5 17 17 N 1.46502 * 110.72109 * 96.17135 * 15 14 5 18 18 C 1.34778 * 119.99907 * 91.47223 * 17 15 14 19 19 O 1.21585 * 120.00422 * 0.02562 * 18 17 15 20 20 C 1.47569 * 119.99961 * 179.97438 * 18 17 15 21 21 C 1.38712 * 120.43418 * 354.13421 * 20 18 17 22 22 C 1.39001 * 120.75199 * 179.67447 * 21 20 18 23 23 C 1.36345 * 121.18488 * 0.62323 * 22 21 20 24 24 C 1.40347 * 119.93423 * 359.68132 * 23 22 21 25 25 C 1.40682 * 122.10262 * 180.02562 * 24 23 22 26 26 C 1.36257 * 118.66911 * 180.02562 * 25 24 23 27 27 N 1.32509 * 121.84030 * 359.95100 * 26 25 24 28 28 C 1.31318 * 122.72025 * 0.02718 * 27 26 25 29 29 C 1.40132 * 119.91821 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.47161 * 297.56566 * 1 2 3 31 31 H 1.08997 * 109.47609 * 57.57205 * 1 2 3 32 32 H 1.09001 * 109.47033 * 177.57334 * 1 2 3 33 33 H 1.08999 * 109.46994 * 182.43000 * 3 2 1 34 34 H 1.09000 * 109.47147 * 302.43124 * 3 2 1 35 35 H 1.09000 * 109.46410 * 62.42832 * 3 2 1 36 36 H 1.08996 * 110.36598 * 322.22762 * 4 2 1 37 37 H 1.08997 * 110.45876 * 199.95143 * 4 2 1 38 38 H 0.97001 * 119.99813 * 179.97438 * 9 8 6 39 39 H 1.09001 * 109.87875 * 118.35645 * 14 5 4 40 40 H 1.08997 * 109.87998 * 239.52278 * 14 5 4 41 41 H 0.96998 * 120.00336 * 271.47949 * 17 15 14 42 42 H 1.08003 * 119.62029 * 359.96756 * 21 20 18 43 43 H 1.07998 * 119.40499 * 180.30740 * 22 21 20 44 44 H 1.08007 * 120.02604 * 179.70208 * 23 22 21 45 45 H 1.08001 * 120.66317 * 359.96996 * 25 24 23 46 46 H 1.08004 * 119.08286 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.04192 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4296 0.0000 4 6 2.0853 -0.8062 1.2006 5 7 2.0140 -2.2156 0.7741 6 6 1.9507 -3.2997 1.6084 7 1 1.9500 -3.1577 2.6789 8 6 1.8875 -4.5808 1.0779 9 7 1.8878 -4.7537 -0.2269 10 14 1.8004 -6.0596 2.2160 11 1 1.8140 -5.5992 3.6277 12 1 0.5486 -6.8138 1.9528 13 1 2.9702 -6.9414 1.9721 14 6 2.0286 -2.2649 -0.6953 15 6 2.0861 -0.8083 -1.2020 16 1 1.4540 -0.6774 -2.0802 17 7 3.4666 -0.4159 -1.4961 18 6 3.9654 -0.5848 -2.7368 19 8 3.2696 -1.0624 -3.6120 20 6 5.3558 -0.1891 -3.0332 21 6 6.1182 0.4676 -2.0785 22 6 7.4307 0.8374 -2.3483 23 6 8.0025 0.5785 -3.5586 24 6 7.2648 -0.0785 -4.5555 25 6 7.8094 -0.3689 -5.8197 26 6 7.0301 -1.0092 -6.7358 27 7 5.7819 -1.3630 -6.4664 28 6 5.2106 -1.1241 -5.3084 29 6 5.9271 -0.4700 -4.2973 30 1 -0.3633 0.4755 0.9110 31 1 -0.3634 0.5510 -0.8674 32 1 -0.3633 -1.0268 -0.0435 33 1 3.1642 1.4030 -0.0436 34 1 1.6901 1.9655 -0.8674 35 1 1.7605 1.9385 0.9110 36 1 1.4673 -0.6454 2.0839 37 1 3.1180 -0.5233 1.4044 38 1 1.8440 -5.6491 -0.5975 39 1 2.9065 -2.8119 -1.0391 40 1 1.1220 -2.7483 -1.0590 41 1 4.0217 -0.0347 -0.7980 42 1 5.6886 0.6899 -1.1128 43 1 8.0061 1.3434 -1.5872 44 1 9.0223 0.8785 -3.7498 45 1 8.8246 -0.0890 -6.0596 46 1 7.4414 -1.2350 -7.7087 47 1 4.1900 -1.4321 -5.1353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977427562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:19 Heat of formation + Delta-G solvation = 32.855140 kcal Electronic energy + Delta-G solvation = -29702.468538 eV Core-core repulsion = 25850.125472 eV Total energy + Delta-G solvation = -3852.343066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.14774 -41.01269 -39.44040 -38.17820 -35.75111 -34.67452 -33.88008 -32.60840 -32.17605 -30.99256 -29.57576 -28.05858 -27.41511 -25.90012 -25.15791 -24.45859 -24.06280 -22.21678 -21.61798 -20.23000 -19.01813 -18.79013 -18.63992 -17.79976 -17.32500 -17.02138 -16.69742 -16.26220 -15.96618 -15.64928 -15.55353 -15.36809 -15.06973 -14.78321 -14.60633 -14.52287 -13.98171 -13.78592 -13.68037 -13.45540 -13.18056 -13.08463 -13.01829 -12.95564 -12.83013 -12.72588 -12.58620 -12.50300 -12.07449 -11.86037 -11.72687 -11.53643 -11.31777 -11.18260 -10.92208 -10.74570 -10.38767 -10.17588 -10.07923 -9.09051 -8.88889 -7.83857 -5.20274 -0.91282 -0.11870 0.58252 1.43715 1.44672 1.55105 1.72478 2.04286 2.25363 2.48806 3.08315 3.35095 3.44583 3.49298 3.56430 3.71714 3.72974 3.76395 3.85583 3.95418 3.96603 4.07565 4.19863 4.38948 4.40517 4.51003 4.56069 4.70369 4.73670 4.80095 4.85155 4.88856 4.90100 4.96155 5.00991 5.09697 5.14374 5.18036 5.20388 5.30588 5.33669 5.36222 5.46898 5.56581 5.67659 5.70378 5.74314 5.80233 6.17579 6.48981 7.00305 7.07969 7.19379 7.78218 8.42132 9.25608 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.003415 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.069291 B = 8197.933331 C = 9115.937299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 C -0.124 4.124 4 C 0.137 3.863 5 N -0.620 5.620 6 C -0.233 4.233 7 H 0.089 0.911 8 C -0.070 4.070 9 N -0.955 5.955 10 Si 0.975 3.025 11 H -0.259 1.259 12 H -0.296 1.296 13 H -0.297 1.297 14 C 0.193 3.807 15 C 0.136 3.864 16 H 0.080 0.920 17 N -0.688 5.688 18 C 0.551 3.449 19 O -0.574 6.574 20 C -0.131 4.131 21 C -0.060 4.060 22 C -0.106 4.106 23 C -0.072 4.072 24 C -0.051 4.051 25 C -0.140 4.140 26 C 0.049 3.951 27 N -0.516 5.516 28 C 0.109 3.891 29 C -0.095 4.095 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.034 0.966 38 H 0.242 0.758 39 H -0.001 1.001 40 H 0.006 0.994 41 H 0.410 0.590 42 H 0.155 0.845 43 H 0.179 0.821 44 H 0.179 0.821 45 H 0.184 0.816 46 H 0.179 0.821 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.164 19.614 -3.420 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.075 4.075 3 C -0.182 4.182 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.362 4.362 7 H 0.107 0.893 8 C -0.262 4.262 9 N -0.604 5.604 10 Si 0.804 3.196 11 H -0.183 1.183 12 H -0.224 1.224 13 H -0.225 1.225 14 C 0.067 3.933 15 C 0.030 3.970 16 H 0.098 0.902 17 N -0.339 5.339 18 C 0.341 3.659 19 O -0.455 6.455 20 C -0.136 4.136 21 C -0.079 4.079 22 C -0.124 4.124 23 C -0.089 4.089 24 C -0.056 4.056 25 C -0.159 4.159 26 C -0.094 4.094 27 N -0.225 5.225 28 C -0.060 4.060 29 C -0.098 4.098 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.017 0.983 40 H 0.024 0.976 41 H 0.249 0.751 42 H 0.172 0.828 43 H 0.196 0.804 44 H 0.196 0.804 45 H 0.201 0.799 46 H 0.196 0.804 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 13.275 18.657 -4.730 23.381 hybrid contribution -0.005 -1.404 0.987 1.716 sum 13.270 17.253 -3.744 22.086 Atomic orbital electron populations 1.21592 0.92895 1.00918 1.02743 1.21997 0.96666 0.95928 0.92954 1.21666 1.00989 0.92288 1.03243 1.21916 0.97863 0.83139 0.95798 1.44684 1.86610 1.01660 1.01637 1.19521 1.41924 0.84958 0.89824 0.89316 1.25657 1.03041 1.00376 0.97176 1.70241 1.58674 1.20348 1.11167 0.85047 0.76379 0.79404 0.78767 1.18278 1.22356 1.22494 1.21077 0.97137 0.91334 0.83798 1.22131 0.82192 0.94726 0.97925 0.90161 1.45711 1.14257 1.62983 1.10920 1.18589 0.87153 0.77655 0.82542 1.90566 1.61497 1.46720 1.46766 1.19807 0.93538 1.04706 0.95566 1.21853 0.94833 0.93064 0.98147 1.21395 0.93866 0.98896 0.98277 1.21665 1.01080 0.94529 0.91659 1.18570 0.92131 0.98323 0.96609 1.22345 1.02668 0.98953 0.91976 1.22850 0.89247 0.95908 1.01403 1.67559 1.13770 1.19074 1.22069 1.24235 1.01220 0.92691 0.87885 1.18977 0.95643 1.00501 0.94647 0.90417 0.91445 0.95267 0.91702 0.91730 0.90140 0.93198 0.94792 0.94863 0.98273 0.97623 0.75142 0.82791 0.80388 0.80389 0.79882 0.80382 0.81467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.72 8.61 71.98 0.62 -3.10 16 2 C -0.07 -2.25 0.83 -50.79 -0.04 -2.29 16 3 C -0.12 -2.53 8.35 71.99 0.60 -1.93 16 4 C 0.14 5.03 6.12 86.86 0.53 5.56 16 5 N -0.62 -31.00 3.38 -691.98 -2.34 -33.34 16 6 C -0.23 -12.94 10.28 84.03 0.86 -12.07 16 7 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 8 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 9 N -0.95 -60.52 10.31 21.65 0.22 -60.29 16 10 Si 0.98 46.84 29.55 68.60 2.03 48.86 16 11 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 13 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 14 C 0.19 9.96 4.73 86.73 0.41 10.37 16 15 C 0.14 5.20 2.59 46.18 0.12 5.32 16 16 H 0.08 3.29 7.45 -2.39 -0.02 3.27 16 17 N -0.69 -22.32 4.36 -440.04 -1.92 -24.24 16 18 C 0.55 19.82 7.73 86.71 0.67 20.49 16 19 O -0.57 -25.36 13.11 -3.98 -0.05 -25.41 16 20 C -0.13 -3.79 5.90 -19.89 -0.12 -3.91 16 21 C -0.06 -1.14 9.51 22.57 0.21 -0.92 16 22 C -0.11 -1.33 9.93 22.01 0.22 -1.11 16 23 C -0.07 -0.96 9.79 22.34 0.22 -0.74 16 24 C -0.05 -1.11 5.74 -21.30 -0.12 -1.24 16 25 C -0.14 -2.56 9.88 22.41 0.22 -2.34 16 26 C 0.05 1.16 11.07 84.13 0.93 2.10 16 27 N -0.52 -17.08 10.30 -195.73 -2.02 -19.09 16 28 C 0.11 3.91 10.49 85.23 0.89 4.80 16 29 C -0.09 -2.89 5.76 -21.14 -0.12 -3.01 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.03 1.09 7.81 -2.39 -0.02 1.08 16 33 H 0.06 1.13 6.27 -2.39 -0.01 1.11 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.76 8.05 -2.39 -0.02 1.74 16 37 H 0.03 1.14 8.04 -2.39 -0.02 1.12 16 38 H 0.24 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.00 -0.06 7.41 -2.39 -0.02 -0.07 16 40 H 0.01 0.34 7.38 -2.39 -0.02 0.32 16 41 H 0.41 10.50 5.12 -92.71 -0.48 10.02 16 42 H 0.15 2.09 6.42 -2.91 -0.02 2.08 16 43 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 44 H 0.18 0.85 8.06 -2.91 -0.02 0.82 16 45 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 46 H 0.18 2.92 8.06 -2.91 -0.02 2.89 16 47 H 0.17 7.01 4.97 -2.93 -0.01 7.00 16 Total: -1.00 -83.44 375.03 3.02 -80.42 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.52 Total: 20.73 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 6.58 Total: 12.37 kcal Atomic # 7 Polarization: -130.92 SS G_CDS: -6.05 Total: -136.97 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.05 Total: -25.41 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -83.44 3.02 -80.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977427562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.276 kcal (2) G-P(sol) polarization free energy of solvation -83.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds