Wall clock time and date at job start Tue Mar 31 2020 23:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 110.91883 * 2 1 4 4 C 1.55383 * 111.19076 * 235.93362 * 2 1 3 5 5 N 1.47424 * 104.87682 * 204.97921 * 4 2 1 6 6 C 1.36939 * 125.65361 * 204.16837 * 5 4 2 7 7 H 1.08009 * 119.99591 * 354.84104 * 6 5 4 8 8 C 1.38813 * 120.00432 * 174.83948 * 6 5 4 9 9 N 1.31618 * 119.99495 * 7.06915 * 8 6 5 10 10 Si 1.86794 * 120.00124 * 187.06352 * 8 6 5 11 11 H 1.48505 * 109.46992 * 94.98946 * 10 8 6 12 12 H 1.48498 * 109.47154 * 214.98844 * 10 8 6 13 13 H 1.48503 * 109.47385 * 334.99021 * 10 8 6 14 14 C 1.47024 * 108.70160 * 24.13880 * 5 4 2 15 15 C 1.54320 * 107.27188 * 358.93718 * 14 5 4 16 16 H 1.08998 * 110.71966 * 219.27221 * 15 14 5 17 17 N 1.46498 * 110.72177 * 96.17150 * 15 14 5 18 18 C 1.34775 * 119.99876 * 88.84146 * 17 15 14 19 19 O 1.21564 * 120.00156 * 0.02562 * 18 17 15 20 20 C 1.47781 * 119.99700 * 179.97438 * 18 17 15 21 21 C 1.40645 * 119.70259 * 0.02562 * 20 18 17 22 22 C 1.35844 * 120.88071 * 179.97438 * 21 20 18 23 23 C 1.40393 * 119.84190 * 359.97438 * 22 21 20 24 24 C 1.40638 * 121.97703 * 179.97438 * 23 22 21 25 25 C 1.36224 * 118.73190 * 180.02562 * 24 23 22 26 26 N 1.32596 * 121.90009 * 359.97438 * 25 24 23 27 27 C 1.31240 * 122.74020 * 0.02562 * 26 25 24 28 28 C 1.40544 * 119.88823 * 359.97438 * 27 26 25 29 29 C 1.38571 * 119.69387 * 180.23073 * 20 18 17 30 30 H 1.09000 * 109.47084 * 296.10366 * 1 2 3 31 31 H 1.08998 * 109.46866 * 56.10499 * 1 2 3 32 32 H 1.08999 * 109.47245 * 176.10015 * 1 2 3 33 33 H 1.09001 * 109.47426 * 183.90001 * 3 2 1 34 34 H 1.09001 * 109.47142 * 303.89797 * 3 2 1 35 35 H 1.09001 * 109.47552 * 63.89836 * 3 2 1 36 36 H 1.09000 * 110.34109 * 86.13539 * 4 2 1 37 37 H 1.08997 * 110.44769 * 323.88770 * 4 2 1 38 38 H 0.97003 * 119.99339 * 180.02562 * 9 8 6 39 39 H 1.09007 * 109.88208 * 239.51769 * 14 5 4 40 40 H 1.09000 * 109.88246 * 118.35472 * 14 5 4 41 41 H 0.97000 * 120.00173 * 268.84291 * 17 15 14 42 42 H 1.08005 * 119.55731 * 359.97438 * 21 20 18 43 43 H 1.08000 * 120.08439 * 180.02562 * 22 21 20 44 44 H 1.08001 * 120.62966 * 0.04773 * 24 23 22 45 45 H 1.08003 * 119.04523 * 180.02562 * 25 24 23 46 46 H 1.07996 * 120.05239 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.34687 * 0.06014 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0916 -0.8115 -1.2001 5 7 3.4327 -1.2461 -0.7687 6 6 4.4725 -1.5695 -1.5990 7 1 4.3214 -1.5969 -2.6681 8 6 5.7207 -1.8620 -1.0668 9 7 5.8725 -1.9653 0.2365 10 14 7.1848 -2.1091 -2.2002 11 1 7.9317 -0.8321 -2.3295 12 1 8.0791 -3.1504 -1.6337 13 1 6.7075 -2.5411 -3.5384 14 6 3.4690 -1.2742 0.7008 15 6 2.0861 -0.8079 1.2024 16 1 2.1892 -0.1706 2.0806 17 7 1.2267 -1.9574 1.4964 18 6 1.2426 -2.5142 2.7236 19 8 1.9697 -2.0623 3.5867 20 6 0.3753 -3.6733 3.0203 21 6 -0.4639 -4.1907 2.0172 22 6 -1.2704 -5.2556 2.2636 23 6 -1.2706 -5.8526 3.5343 24 6 -2.0876 -6.9562 3.8386 25 6 -2.0353 -7.4833 5.0936 26 7 -1.2387 -6.9862 6.0298 27 6 -0.4496 -5.9591 5.8182 28 6 -0.4275 -5.3412 4.5561 29 6 0.3932 -4.2379 4.2857 30 1 -0.3633 0.4522 0.9228 31 1 -0.3633 0.5731 -0.8530 32 1 -0.3634 -1.0253 -0.0699 33 1 3.1637 1.4025 -0.0699 34 1 1.6706 1.9731 -0.8530 35 1 1.7837 1.9300 0.9228 36 1 2.1644 -0.1787 -2.0846 37 1 1.4600 -1.6761 -1.4041 38 1 6.7448 -2.1694 0.6085 39 1 4.2428 -0.5985 1.0655 40 1 3.6664 -2.2886 1.0474 41 1 0.6463 -2.3177 0.8078 42 1 -0.4670 -3.7351 1.0379 43 1 -1.9094 -5.6427 1.4837 44 1 -2.7436 -7.3778 3.0913 45 1 -2.6603 -8.3311 5.3327 46 1 0.1816 -5.5893 6.6127 47 1 1.0360 -3.8346 5.0541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977430770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:48 Heat of formation + Delta-G solvation = 25.166181 kcal Electronic energy + Delta-G solvation = -29189.421208 eV Core-core repulsion = 25336.744724 eV Total energy + Delta-G solvation = -3852.676484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.98090 -41.14659 -39.56886 -37.93203 -35.73861 -34.61244 -34.00475 -32.62305 -32.33830 -30.79808 -29.72467 -28.08428 -27.42572 -26.05526 -24.96684 -24.78015 -23.28610 -22.43238 -21.68668 -20.37904 -19.18133 -18.76106 -18.66987 -17.84716 -17.14363 -16.84876 -16.65840 -16.03897 -15.97002 -15.68480 -15.46902 -15.30078 -15.12402 -14.83476 -14.77251 -14.51427 -14.26312 -14.03368 -13.80085 -13.43595 -13.15209 -13.08180 -12.95291 -12.86983 -12.82405 -12.70380 -12.58356 -12.32067 -12.10499 -11.86622 -11.76650 -11.53467 -11.30301 -11.23816 -11.11251 -10.72586 -10.51313 -10.25766 -9.99968 -9.10982 -8.88598 -7.84716 -5.19906 -0.81750 -0.33665 0.77187 1.43785 1.45876 1.51192 1.54649 2.08992 2.34828 2.48963 3.05381 3.33644 3.44522 3.45205 3.53859 3.61519 3.66894 3.73422 3.87098 3.96025 3.99764 4.05253 4.08138 4.29903 4.39245 4.51872 4.63813 4.66949 4.68720 4.78385 4.85686 4.89168 4.90808 4.93289 4.95848 5.04983 5.13129 5.16786 5.19746 5.27958 5.30624 5.36398 5.47178 5.56946 5.60184 5.69436 5.72740 5.73742 6.17715 6.52246 6.94598 7.07766 7.19335 7.78110 8.42687 9.24961 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.002912 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.013247 B = 9612.185730 C =10544.805540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 C -0.124 4.124 4 C 0.137 3.863 5 N -0.619 5.619 6 C -0.235 4.235 7 H 0.088 0.912 8 C -0.069 4.069 9 N -0.951 5.951 10 Si 0.975 3.025 11 H -0.289 1.289 12 H -0.301 1.301 13 H -0.263 1.263 14 C 0.192 3.808 15 C 0.137 3.863 16 H 0.078 0.922 17 N -0.691 5.691 18 C 0.550 3.450 19 O -0.582 6.582 20 C -0.144 4.144 21 C -0.077 4.077 22 C -0.104 4.104 23 C -0.023 4.023 24 C -0.151 4.151 25 C 0.071 3.929 26 N -0.512 5.512 27 C 0.148 3.852 28 C -0.135 4.135 29 C -0.026 4.026 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.029 0.971 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.033 0.967 38 H 0.243 0.757 39 H 0.008 0.992 40 H -0.003 1.003 41 H 0.409 0.591 42 H 0.149 0.851 43 H 0.175 0.825 44 H 0.175 0.825 45 H 0.181 0.819 46 H 0.180 0.820 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.557 -5.329 3.388 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.075 4.075 3 C -0.182 4.182 4 C 0.012 3.988 5 N -0.346 5.346 6 C -0.364 4.364 7 H 0.105 0.895 8 C -0.262 4.262 9 N -0.601 5.601 10 Si 0.804 3.196 11 H -0.216 1.216 12 H -0.228 1.228 13 H -0.187 1.187 14 C 0.066 3.934 15 C 0.031 3.969 16 H 0.096 0.904 17 N -0.343 5.343 18 C 0.338 3.662 19 O -0.463 6.463 20 C -0.147 4.147 21 C -0.096 4.096 22 C -0.122 4.122 23 C -0.029 4.029 24 C -0.170 4.170 25 C -0.072 4.072 26 N -0.221 5.221 27 C -0.023 4.023 28 C -0.137 4.137 29 C -0.047 4.047 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.026 0.974 40 H 0.015 0.985 41 H 0.248 0.752 42 H 0.167 0.833 43 H 0.192 0.808 44 H 0.193 0.807 45 H 0.198 0.802 46 H 0.197 0.803 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -21.969 -5.562 4.724 23.149 hybrid contribution 1.711 0.130 -1.220 2.106 sum -20.258 -5.432 3.504 21.264 Atomic orbital electron populations 1.21656 0.90694 1.02672 1.03155 1.22071 0.97313 0.95194 0.92925 1.21595 1.00023 0.93920 1.02660 1.21995 0.85433 0.95507 0.95819 1.44669 1.09525 1.78728 1.01641 1.19460 0.88259 1.38729 0.89971 0.89456 1.25681 1.00495 1.02803 0.97218 1.70246 1.22345 1.56163 1.11306 0.85104 0.79365 0.76780 0.78388 1.21601 1.22787 1.18734 1.21095 0.92006 0.96517 0.83825 1.22122 0.90118 0.86889 0.97774 0.90403 1.45732 1.43420 1.32549 1.12582 1.18699 0.81915 0.83244 0.82306 1.90753 1.43157 1.64531 1.47875 1.19920 1.00606 0.97908 0.96296 1.21227 0.93650 0.96146 0.98600 1.21224 0.99607 0.95318 0.96003 1.18668 0.94665 0.95467 0.94073 1.22288 0.99855 0.95561 0.99276 1.22800 0.95681 0.99360 0.89342 1.67526 1.06532 1.11752 1.36247 1.23577 0.94170 0.90021 0.94504 1.19105 0.99736 0.98128 0.96770 1.21477 0.94851 0.92383 0.95994 0.91737 0.90130 0.91700 0.95167 0.90174 0.91659 0.93205 0.94913 0.94808 0.97431 0.98492 0.75198 0.83293 0.80803 0.80722 0.80179 0.80264 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 8.23 71.98 0.59 -1.94 16 2 C -0.07 -2.24 0.84 -50.62 -0.04 -2.28 16 3 C -0.12 -3.71 8.58 71.98 0.62 -3.10 16 4 C 0.14 5.05 6.16 87.02 0.54 5.58 16 5 N -0.62 -31.00 3.38 -691.02 -2.34 -33.34 16 6 C -0.24 -13.04 10.27 84.03 0.86 -12.18 16 7 H 0.09 4.56 7.84 -2.91 -0.02 4.53 16 8 C -0.07 -4.01 5.48 84.86 0.46 -3.55 16 9 N -0.95 -59.84 10.36 21.65 0.22 -59.61 16 10 Si 0.97 46.61 29.56 68.60 2.03 48.63 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 12 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 13 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 14 C 0.19 9.88 4.81 86.73 0.42 10.30 16 15 C 0.14 5.22 2.54 46.18 0.12 5.33 16 16 H 0.08 3.17 7.52 -2.39 -0.02 3.15 16 17 N -0.69 -22.39 4.46 -439.83 -1.96 -24.35 16 18 C 0.55 19.39 7.76 86.77 0.67 20.07 16 19 O -0.58 -25.63 15.98 -3.92 -0.06 -25.70 16 20 C -0.14 -3.96 5.87 -20.09 -0.12 -4.08 16 21 C -0.08 -1.53 9.44 22.30 0.21 -1.32 16 22 C -0.10 -1.65 9.77 22.24 0.22 -1.43 16 23 C -0.02 -0.44 5.75 -21.24 -0.12 -0.56 16 24 C -0.15 -2.08 9.87 22.39 0.22 -1.86 16 25 C 0.07 1.11 11.07 84.11 0.93 2.04 16 26 N -0.51 -10.71 10.30 -195.41 -2.01 -12.73 16 27 C 0.15 3.07 11.05 85.34 0.94 4.02 16 28 C -0.14 -3.04 5.74 -21.32 -0.12 -3.16 16 29 C -0.03 -0.68 9.37 22.81 0.21 -0.47 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.14 6.44 -2.39 -0.02 1.12 16 33 H 0.03 1.13 7.91 -2.39 -0.02 1.11 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 1.77 8.06 -2.39 -0.02 1.75 16 37 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 38 H 0.24 15.04 8.31 -92.71 -0.77 14.27 16 39 H 0.01 0.45 7.30 -2.38 -0.02 0.44 16 40 H 0.00 -0.19 7.51 -2.39 -0.02 -0.21 16 41 H 0.41 10.53 4.99 -92.71 -0.46 10.07 16 42 H 0.15 2.29 6.34 -2.91 -0.02 2.27 16 43 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 44 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 45 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 46 H 0.18 2.94 8.06 -2.91 -0.02 2.91 16 47 H 0.14 3.75 7.61 -2.91 -0.02 3.73 16 Total: -1.00 -80.01 380.60 3.02 -76.99 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.53 Total: 18.67 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 6.61 Total: 11.43 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -6.09 Total: -130.03 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.06 Total: -25.70 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -80.01 3.02 -76.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977430770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.158 kcal (2) G-P(sol) polarization free energy of solvation -80.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds