Wall clock time and date at job start Tue Mar 31 2020 23:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 110.78041 * 2 1 4 4 C 1.54428 * 110.72129 * 236.70234 * 2 1 3 5 5 N 1.47020 * 107.28477 * 263.84691 * 4 2 1 6 6 C 1.36930 * 125.65065 * 181.09561 * 5 4 2 7 7 H 1.08011 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00304 * 179.97438 * 6 5 4 9 9 N 1.31614 * 119.99902 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00248 * 180.02562 * 8 6 5 11 11 H 1.48510 * 109.46936 * 89.99758 * 10 8 6 12 12 H 1.48495 * 109.47222 * 209.99489 * 10 8 6 13 13 H 1.48497 * 109.46897 * 329.99995 * 10 8 6 14 14 C 1.47428 * 108.70406 * 1.06642 * 5 4 2 15 15 C 1.54915 * 104.82930 * 335.87169 * 14 5 4 16 16 H 1.08995 * 111.00347 * 155.12552 * 15 14 5 17 17 N 1.46502 * 110.99762 * 278.93476 * 15 14 5 18 18 C 1.34780 * 120.00313 * 270.41335 * 17 15 14 19 19 O 1.21501 * 119.99386 * 0.02562 * 18 17 15 20 20 C 1.48269 * 120.00124 * 180.02562 * 18 17 15 21 21 C 1.40281 * 119.23973 * 180.02562 * 20 18 17 22 22 C 1.36503 * 119.81831 * 180.02562 * 21 20 18 23 23 C 1.40757 * 118.24525 * 359.91565 * 22 21 20 24 24 C 1.40417 * 121.28467 * 180.08456 * 23 22 21 25 25 C 1.36135 * 119.64890 * 179.97438 * 24 23 22 26 26 C 1.39435 * 120.91930 * 0.02562 * 25 24 23 27 27 C 1.36002 * 121.07776 * 0.02562 * 26 25 24 28 28 C 1.40817 * 119.73543 * 359.95422 * 27 26 25 29 29 N 1.31873 * 119.24312 * 0.02562 * 20 18 17 30 30 H 1.09000 * 109.46681 * 296.76157 * 1 2 3 31 31 H 1.09003 * 109.47239 * 56.75915 * 1 2 3 32 32 H 1.09002 * 109.47663 * 176.76169 * 1 2 3 33 33 H 1.09000 * 109.47091 * 183.23935 * 3 2 1 34 34 H 1.08993 * 109.47450 * 303.23632 * 3 2 1 35 35 H 1.09001 * 109.47429 * 63.24007 * 3 2 1 36 36 H 1.09004 * 109.87537 * 144.42755 * 4 2 1 37 37 H 1.08997 * 110.00989 * 23.34820 * 4 2 1 38 38 H 0.97003 * 120.00550 * 180.02562 * 9 8 6 39 39 H 1.08993 * 110.36427 * 217.03218 * 14 5 4 40 40 H 1.09001 * 110.36640 * 94.70518 * 14 5 4 41 41 H 0.97002 * 120.00090 * 90.42309 * 17 15 14 42 42 H 1.07999 * 120.09269 * 0.02562 * 21 20 18 43 43 H 1.08010 * 120.87761 * 179.97438 * 22 21 20 44 44 H 1.08003 * 120.17920 * 0.02562 * 24 23 22 45 45 H 1.07999 * 119.54488 * 179.72286 * 25 24 23 46 46 H 1.07994 * 119.46386 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.12595 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0764 -0.7929 -1.2073 5 7 2.3717 -2.1546 -0.7380 6 6 2.8945 -3.1654 -1.4996 7 1 3.1252 -2.9932 -2.5406 8 6 3.1280 -4.4113 -0.9338 9 7 2.8473 -4.6209 0.3349 10 14 3.8418 -5.7900 -1.9726 11 1 5.3244 -5.7522 -1.8941 12 1 3.3524 -7.0967 -1.4648 13 1 3.4164 -5.6168 -3.3848 14 6 2.0124 -2.2514 0.6885 15 6 2.0789 -0.7955 1.2138 16 1 1.4399 -0.6658 2.0872 17 7 3.4595 -0.4084 1.5144 18 6 3.9681 -0.6264 2.7434 19 8 3.2818 -1.1444 3.6017 20 6 5.3652 -0.2341 3.0477 21 6 5.8786 -0.4689 4.3320 22 6 7.1630 -0.1119 4.6252 23 6 7.9362 0.4857 3.6121 24 6 9.2650 0.8762 3.8434 25 6 9.9825 1.4508 2.8393 26 6 9.4163 1.6584 1.5821 27 6 8.1321 1.2941 1.3217 28 6 7.3568 0.6962 2.3337 29 7 6.0966 0.3275 2.1050 30 1 -0.3633 0.4627 0.9176 31 1 -0.3634 0.5633 -0.8595 32 1 -0.3634 -1.0260 -0.0581 33 1 3.1610 1.4061 -0.0581 34 1 1.6752 1.9700 -0.8595 35 1 1.7692 1.9343 0.9176 36 1 2.9874 -0.3228 -1.5778 37 1 1.3289 -0.8278 -1.9997 38 1 3.0107 -5.4914 0.7304 39 1 2.7289 -2.8790 1.2184 40 1 1.0036 -2.6490 0.7995 41 1 4.0075 0.0050 0.8291 42 1 5.2593 -0.9308 5.0866 43 1 7.5756 -0.2844 5.6084 44 1 9.7157 0.7208 4.8125 45 1 11.0029 1.7547 3.0204 46 1 10.0068 2.1167 0.8027 47 1 7.7092 1.4616 0.3422 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977528999.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:38 Heat of formation + Delta-G solvation = 49.252891 kcal Electronic energy + Delta-G solvation = -29617.003816 eV Core-core repulsion = 25765.371810 eV Total energy + Delta-G solvation = -3851.632006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.02772 -39.56140 -38.02297 -36.76757 -33.95299 -33.62956 -32.87214 -30.81903 -30.63746 -30.16103 -28.10225 -26.83614 -25.58223 -25.11205 -23.84459 -23.12300 -22.24596 -20.94175 -19.85605 -18.90412 -18.07865 -17.66817 -17.23778 -16.66305 -15.74217 -15.38830 -15.00012 -14.81881 -14.57479 -14.45195 -14.02088 -13.90633 -13.73515 -13.63143 -13.32782 -13.23625 -13.12363 -12.62116 -12.18030 -11.88613 -11.84344 -11.77622 -11.68744 -11.64458 -11.24297 -11.11767 -10.96416 -10.73710 -10.71876 -10.37813 -10.19535 -10.01081 -9.91092 -9.76112 -9.64445 -9.37539 -8.91280 -8.63873 -8.46011 -8.28603 -6.76125 -5.58502 -3.01016 0.12178 0.58346 1.82591 2.47445 3.37952 3.42874 3.47538 3.49896 3.50957 4.07950 4.12188 4.39824 4.52849 4.62003 4.65920 4.83234 4.97686 5.02622 5.03711 5.20955 5.29736 5.33492 5.36554 5.57279 5.60618 5.67240 5.79036 5.84692 5.85790 5.92478 5.94022 6.08644 6.13698 6.16575 6.21567 6.23869 6.33521 6.34237 6.44508 6.53898 6.64272 6.66189 6.74889 6.81079 7.03083 7.50105 7.64700 7.66855 7.92222 8.09884 8.43515 8.66322 9.26712 9.88441 10.52640 11.44348 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009982 B = 0.003752 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.481806 B = 7460.884867 C = 8508.312194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.132 4.132 4 C 0.143 3.857 5 N -0.600 5.600 6 C -0.223 4.223 7 H 0.076 0.924 8 C -0.009 4.009 9 N -0.918 5.918 10 Si 0.911 3.089 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.147 3.853 15 C 0.120 3.880 16 H 0.088 0.912 17 N -0.676 5.676 18 C 0.565 3.435 19 O -0.535 6.535 20 C 0.130 3.870 21 C -0.122 4.122 22 C -0.066 4.066 23 C -0.091 4.091 24 C -0.101 4.101 25 C -0.112 4.112 26 C -0.108 4.108 27 C -0.082 4.082 28 C 0.125 3.875 29 N -0.442 5.442 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.252 0.748 39 H 0.113 0.887 40 H 0.022 0.978 41 H 0.407 0.593 42 H 0.152 0.848 43 H 0.144 0.856 44 H 0.130 0.870 45 H 0.127 0.873 46 H 0.130 0.870 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.006 15.670 6.702 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.088 4.088 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.326 5.326 6 C -0.351 4.351 7 H 0.094 0.906 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.218 1.218 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.021 3.979 15 C 0.015 3.985 16 H 0.106 0.894 17 N -0.325 5.325 18 C 0.348 3.652 19 O -0.411 6.411 20 C -0.024 4.024 21 C -0.143 4.143 22 C -0.092 4.092 23 C -0.093 4.093 24 C -0.120 4.120 25 C -0.130 4.130 26 C -0.128 4.128 27 C -0.101 4.101 28 C 0.001 3.999 29 N -0.153 5.153 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.131 0.869 40 H 0.040 0.960 41 H 0.244 0.756 42 H 0.169 0.831 43 H 0.162 0.838 44 H 0.148 0.852 45 H 0.145 0.855 46 H 0.148 0.852 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.231 15.236 6.423 18.936 hybrid contribution 1.056 -0.816 -0.133 1.342 sum 10.287 14.419 6.289 18.796 Atomic orbital electron populations 1.21686 0.93486 1.02494 1.00881 1.21854 0.95994 0.94609 0.96320 1.21723 1.00681 0.95335 1.01208 1.21429 0.96497 0.86753 0.93615 1.44444 1.74160 1.06706 1.07333 1.19028 1.34034 0.89192 0.92869 0.90581 1.24772 1.01762 0.97610 0.96331 1.69797 1.53702 1.22302 1.10782 0.86125 0.78726 0.81811 0.79137 1.21759 1.21690 1.20772 1.22313 1.00144 0.90285 0.85167 1.22623 0.81002 0.98414 0.96443 0.89370 1.45666 1.14672 1.60102 1.12108 1.17770 0.84851 0.79338 0.83225 1.90765 1.59522 1.43567 1.47272 1.21556 0.94880 0.95401 0.90528 1.21794 0.96187 0.98981 0.97334 1.21437 0.93386 0.95493 0.98922 1.18974 0.95568 1.00103 0.94702 1.20976 0.92646 0.98600 0.99760 1.20963 1.00146 0.98717 0.93201 1.20907 0.95061 0.99629 0.97221 1.20919 0.93536 0.96965 0.98653 1.18877 0.90448 0.98042 0.92501 1.67879 1.05486 1.09009 1.32951 0.93059 0.92687 0.91718 0.92684 0.92721 0.92882 0.96024 0.95816 0.93746 0.86942 0.96005 0.75589 0.83077 0.83803 0.85188 0.85540 0.85208 0.84358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.41 37.16 0.31 -1.66 16 2 C -0.09 -1.49 0.81 -152.62 -0.12 -1.61 16 3 C -0.13 -1.86 8.08 37.15 0.30 -1.56 16 4 C 0.14 2.95 6.41 -3.01 -0.02 2.93 16 5 N -0.60 -15.32 3.39 -170.00 -0.58 -15.90 16 6 C -0.22 -6.27 10.27 -15.06 -0.15 -6.42 16 7 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 9 N -0.92 -27.56 10.09 55.49 0.56 -27.00 16 10 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.15 3.67 5.27 -2.52 -0.01 3.65 16 15 C 0.12 2.40 2.61 -65.78 -0.17 2.23 16 16 H 0.09 1.75 7.53 -51.93 -0.39 1.36 16 17 N -0.68 -12.97 4.61 -52.53 -0.24 -13.21 16 18 C 0.56 11.06 7.81 -12.13 -0.09 10.97 16 19 O -0.53 -11.69 15.97 5.36 0.09 -11.60 16 20 C 0.13 2.21 6.75 -82.96 -0.56 1.65 16 21 C -0.12 -1.74 9.54 -39.44 -0.38 -2.11 16 22 C -0.07 -0.76 9.88 -39.26 -0.39 -1.15 16 23 C -0.09 -1.11 5.75 -106.72 -0.61 -1.72 16 24 C -0.10 -0.93 9.77 -39.52 -0.39 -1.32 16 25 C -0.11 -0.93 9.96 -39.89 -0.40 -1.32 16 26 C -0.11 -0.97 9.94 -39.94 -0.40 -1.37 16 27 C -0.08 -0.95 9.99 -39.41 -0.39 -1.35 16 28 C 0.12 1.76 6.61 -84.86 -0.56 1.20 16 29 N -0.44 -7.19 9.47 -7.54 -0.07 -7.26 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 1.12 7.57 -51.93 -0.39 0.73 16 33 H 0.05 0.78 6.42 -51.93 -0.33 0.45 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.02 0.44 7.77 -51.93 -0.40 0.04 16 37 H 0.02 0.49 7.85 -51.93 -0.41 0.08 16 38 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.11 3.28 5.87 -51.93 -0.30 2.98 16 40 H 0.02 0.59 7.80 -51.93 -0.41 0.18 16 41 H 0.41 7.51 6.33 -40.82 -0.26 7.25 16 42 H 0.15 2.02 7.60 -52.49 -0.40 1.62 16 43 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 44 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 45 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 46 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 47 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -33.36 381.49 -10.30 -43.66 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.65 Total: 7.30 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -4.13 Total: 0.70 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.33 Total: -63.38 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.36 -10.30 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977528999.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.908 kcal (2) G-P(sol) polarization free energy of solvation -33.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds