Wall clock time and date at job start Tue Mar 31 2020 23:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 110.78041 * 2 1 4 4 C 1.54428 * 110.72129 * 236.70234 * 2 1 3 5 5 N 1.47020 * 107.28477 * 263.84691 * 4 2 1 6 6 C 1.36930 * 125.65065 * 181.09561 * 5 4 2 7 7 H 1.08011 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00304 * 179.97438 * 6 5 4 9 9 N 1.31614 * 119.99902 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00248 * 180.02562 * 8 6 5 11 11 H 1.48510 * 109.46936 * 89.99758 * 10 8 6 12 12 H 1.48495 * 109.47222 * 209.99489 * 10 8 6 13 13 H 1.48497 * 109.46897 * 329.99995 * 10 8 6 14 14 C 1.47428 * 108.70406 * 1.06642 * 5 4 2 15 15 C 1.54915 * 104.82930 * 335.87169 * 14 5 4 16 16 H 1.08995 * 111.00347 * 155.12552 * 15 14 5 17 17 N 1.46502 * 110.99762 * 278.93476 * 15 14 5 18 18 C 1.34780 * 120.00313 * 270.41335 * 17 15 14 19 19 O 1.21501 * 119.99386 * 0.02562 * 18 17 15 20 20 C 1.48269 * 120.00124 * 180.02562 * 18 17 15 21 21 C 1.40281 * 119.23973 * 180.02562 * 20 18 17 22 22 C 1.36503 * 119.81831 * 180.02562 * 21 20 18 23 23 C 1.40757 * 118.24525 * 359.91565 * 22 21 20 24 24 C 1.40417 * 121.28467 * 180.08456 * 23 22 21 25 25 C 1.36135 * 119.64890 * 179.97438 * 24 23 22 26 26 C 1.39435 * 120.91930 * 0.02562 * 25 24 23 27 27 C 1.36002 * 121.07776 * 0.02562 * 26 25 24 28 28 C 1.40817 * 119.73543 * 359.95422 * 27 26 25 29 29 N 1.31873 * 119.24312 * 0.02562 * 20 18 17 30 30 H 1.09000 * 109.46681 * 296.76157 * 1 2 3 31 31 H 1.09003 * 109.47239 * 56.75915 * 1 2 3 32 32 H 1.09002 * 109.47663 * 176.76169 * 1 2 3 33 33 H 1.09000 * 109.47091 * 183.23935 * 3 2 1 34 34 H 1.08993 * 109.47450 * 303.23632 * 3 2 1 35 35 H 1.09001 * 109.47429 * 63.24007 * 3 2 1 36 36 H 1.09004 * 109.87537 * 144.42755 * 4 2 1 37 37 H 1.08997 * 110.00989 * 23.34820 * 4 2 1 38 38 H 0.97003 * 120.00550 * 180.02562 * 9 8 6 39 39 H 1.08993 * 110.36427 * 217.03218 * 14 5 4 40 40 H 1.09001 * 110.36640 * 94.70518 * 14 5 4 41 41 H 0.97002 * 120.00090 * 90.42309 * 17 15 14 42 42 H 1.07999 * 120.09269 * 0.02562 * 21 20 18 43 43 H 1.08010 * 120.87761 * 179.97438 * 22 21 20 44 44 H 1.08003 * 120.17920 * 0.02562 * 24 23 22 45 45 H 1.07999 * 119.54488 * 179.72286 * 25 24 23 46 46 H 1.07994 * 119.46386 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.12595 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0764 -0.7929 -1.2073 5 7 2.3717 -2.1546 -0.7380 6 6 2.8945 -3.1654 -1.4996 7 1 3.1252 -2.9932 -2.5406 8 6 3.1280 -4.4113 -0.9338 9 7 2.8473 -4.6209 0.3349 10 14 3.8418 -5.7900 -1.9726 11 1 5.3244 -5.7522 -1.8941 12 1 3.3524 -7.0967 -1.4648 13 1 3.4164 -5.6168 -3.3848 14 6 2.0124 -2.2514 0.6885 15 6 2.0789 -0.7955 1.2138 16 1 1.4399 -0.6658 2.0872 17 7 3.4595 -0.4084 1.5144 18 6 3.9681 -0.6264 2.7434 19 8 3.2818 -1.1444 3.6017 20 6 5.3652 -0.2341 3.0477 21 6 5.8786 -0.4689 4.3320 22 6 7.1630 -0.1119 4.6252 23 6 7.9362 0.4857 3.6121 24 6 9.2650 0.8762 3.8434 25 6 9.9825 1.4508 2.8393 26 6 9.4163 1.6584 1.5821 27 6 8.1321 1.2941 1.3217 28 6 7.3568 0.6962 2.3337 29 7 6.0966 0.3275 2.1050 30 1 -0.3633 0.4627 0.9176 31 1 -0.3634 0.5633 -0.8595 32 1 -0.3634 -1.0260 -0.0581 33 1 3.1610 1.4061 -0.0581 34 1 1.6752 1.9700 -0.8595 35 1 1.7692 1.9343 0.9176 36 1 2.9874 -0.3228 -1.5778 37 1 1.3289 -0.8278 -1.9997 38 1 3.0107 -5.4914 0.7304 39 1 2.7289 -2.8790 1.2184 40 1 1.0036 -2.6490 0.7995 41 1 4.0075 0.0050 0.8291 42 1 5.2593 -0.9308 5.0866 43 1 7.5756 -0.2844 5.6084 44 1 9.7157 0.7208 4.8125 45 1 11.0029 1.7547 3.0204 46 1 10.0068 2.1167 0.8027 47 1 7.7092 1.4616 0.3422 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977528999.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:37 Heat of formation + Delta-G solvation = 28.224673 kcal Electronic energy + Delta-G solvation = -29617.915668 eV Core-core repulsion = 25765.371810 eV Total energy + Delta-G solvation = -3852.543858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.06848 -41.03514 -39.50560 -37.79794 -35.72528 -34.88265 -34.25994 -32.62673 -31.79817 -31.02741 -29.79644 -28.10032 -27.45781 -26.33055 -25.05596 -24.50754 -23.07808 -22.56573 -21.54132 -20.36693 -19.14474 -18.89272 -18.69846 -18.17666 -17.32224 -16.75540 -16.41366 -16.19767 -15.72522 -15.64671 -15.43386 -15.28912 -15.12397 -14.97585 -14.66657 -14.35777 -14.10990 -14.03200 -13.76260 -13.67518 -13.05478 -13.02514 -12.90670 -12.70434 -12.63681 -12.62263 -12.57348 -12.44651 -12.13121 -11.82814 -11.79682 -11.64528 -11.49258 -11.39340 -11.35067 -10.79540 -10.59400 -10.06237 -9.79244 -9.27037 -8.86136 -7.76861 -5.21924 -0.84003 -0.34151 0.93300 1.40434 1.41660 1.43992 1.52879 2.04666 2.27226 2.47158 2.96874 3.09669 3.32576 3.53399 3.57693 3.65650 3.69970 3.83163 3.90066 3.95115 4.05445 4.16178 4.25002 4.37942 4.39072 4.49294 4.51036 4.67986 4.77228 4.82380 4.85092 4.89770 4.91851 5.01407 5.03631 5.08699 5.09937 5.18063 5.26656 5.30484 5.37890 5.44730 5.45816 5.49599 5.51240 5.64072 5.80673 5.87568 6.29338 6.40403 6.71079 7.07797 7.14544 7.77521 8.41575 9.23907 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009982 B = 0.003752 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.481806 B = 7460.884867 C = 8508.312194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.124 4.124 4 C 0.139 3.861 5 N -0.618 5.618 6 C -0.234 4.234 7 H 0.083 0.917 8 C -0.068 4.068 9 N -0.949 5.949 10 Si 0.977 3.023 11 H -0.289 1.289 12 H -0.296 1.296 13 H -0.266 1.266 14 C 0.155 3.845 15 C 0.131 3.869 16 H 0.087 0.913 17 N -0.674 5.674 18 C 0.559 3.441 19 O -0.569 6.569 20 C 0.099 3.901 21 C -0.145 4.145 22 C -0.047 4.047 23 C -0.103 4.103 24 C -0.100 4.100 25 C -0.103 4.103 26 C -0.091 4.091 27 C -0.111 4.111 28 C 0.096 3.904 29 N -0.462 5.462 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.028 0.972 37 H 0.030 0.970 38 H 0.243 0.757 39 H 0.067 0.933 40 H -0.007 1.007 41 H 0.411 0.589 42 H 0.149 0.851 43 H 0.187 0.813 44 H 0.166 0.834 45 H 0.167 0.833 46 H 0.162 0.838 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.082 18.342 6.450 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.074 4.074 3 C -0.181 4.181 4 C 0.014 3.986 5 N -0.344 5.344 6 C -0.363 4.363 7 H 0.101 0.899 8 C -0.261 4.261 9 N -0.599 5.599 10 Si 0.806 3.194 11 H -0.217 1.217 12 H -0.222 1.222 13 H -0.190 1.190 14 C 0.029 3.971 15 C 0.025 3.975 16 H 0.105 0.895 17 N -0.323 5.323 18 C 0.344 3.656 19 O -0.448 6.448 20 C -0.054 4.054 21 C -0.166 4.166 22 C -0.072 4.072 23 C -0.105 4.105 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.111 4.111 27 C -0.130 4.130 28 C -0.028 4.028 29 N -0.174 5.174 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.085 0.915 40 H 0.010 0.990 41 H 0.248 0.752 42 H 0.166 0.834 43 H 0.204 0.796 44 H 0.184 0.816 45 H 0.184 0.816 46 H 0.179 0.821 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 12.304 17.953 6.135 22.613 hybrid contribution 0.307 -1.553 -0.088 1.585 sum 12.611 16.400 6.047 21.554 Atomic orbital electron populations 1.21683 0.91845 1.01484 1.03196 1.21850 0.97204 0.95692 0.92654 1.21673 1.00377 0.92969 1.03104 1.21648 0.96969 0.84799 0.95193 1.44671 1.73974 1.08232 1.07491 1.19449 1.33321 0.90070 0.93466 0.89870 1.25632 1.02825 1.00153 0.97465 1.70113 1.55184 1.22080 1.12492 0.85086 0.77642 0.78390 0.78285 1.21659 1.22229 1.19017 1.21944 0.96977 0.92924 0.85248 1.22353 0.81908 0.95812 0.97439 0.89541 1.45617 1.14357 1.59992 1.12321 1.18338 0.86097 0.78346 0.82771 1.90716 1.60875 1.45092 1.48163 1.21213 0.93712 0.98259 0.92201 1.21824 0.97779 1.00677 0.96304 1.21884 0.91817 0.93048 1.00465 1.19325 0.97157 1.00071 0.93937 1.21402 0.91062 0.97609 1.01749 1.21490 1.01699 0.96737 0.92183 1.21364 0.93857 0.97317 0.98554 1.21077 0.94871 0.98667 0.98391 1.19354 0.89986 0.99009 0.94433 1.67737 1.06912 1.09540 1.33239 0.91057 0.89991 0.94458 0.93132 0.90060 0.91587 0.95397 0.95206 0.94747 0.91472 0.98966 0.75194 0.83356 0.79572 0.81649 0.81567 0.82075 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.72 8.41 71.98 0.61 -3.11 16 2 C -0.07 -2.49 0.81 -50.96 -0.04 -2.53 16 3 C -0.12 -3.26 8.08 71.98 0.58 -2.68 16 4 C 0.14 5.75 6.41 86.77 0.56 6.31 16 5 N -0.62 -32.85 3.39 -691.77 -2.35 -35.20 16 6 C -0.23 -13.57 10.27 84.03 0.86 -12.71 16 7 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 8 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 9 N -0.95 -60.43 10.09 21.65 0.22 -60.22 16 10 Si 0.98 47.87 29.55 68.60 2.03 49.90 16 11 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 12 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 14 C 0.16 8.33 5.27 86.86 0.46 8.79 16 15 C 0.13 5.48 2.61 46.38 0.12 5.60 16 16 H 0.09 3.64 7.53 -2.39 -0.02 3.63 16 17 N -0.67 -27.38 4.61 -438.41 -2.02 -29.40 16 18 C 0.56 23.58 7.81 86.91 0.68 24.26 16 19 O -0.57 -26.95 15.97 -3.72 -0.06 -27.01 16 20 C 0.10 3.56 6.75 42.30 0.29 3.84 16 21 C -0.14 -4.27 9.54 22.36 0.21 -4.06 16 22 C -0.05 -1.00 9.88 22.48 0.22 -0.78 16 23 C -0.10 -2.30 5.75 -21.22 -0.12 -2.42 16 24 C -0.10 -1.40 9.77 22.31 0.22 -1.18 16 25 C -0.10 -1.19 9.96 22.07 0.22 -0.97 16 26 C -0.09 -1.31 9.94 22.04 0.22 -1.09 16 27 C -0.11 -2.47 9.99 22.38 0.22 -2.24 16 28 C 0.10 2.69 6.61 40.47 0.27 2.95 16 29 N -0.46 -15.75 9.47 -177.78 -1.68 -17.43 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.04 1.31 7.57 -2.39 -0.02 1.29 16 33 H 0.05 1.39 6.42 -2.39 -0.02 1.37 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.03 1.13 7.77 -2.38 -0.02 1.11 16 37 H 0.03 1.21 7.85 -2.39 -0.02 1.19 16 38 H 0.24 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.07 4.25 5.87 -2.39 -0.01 4.24 16 40 H -0.01 -0.43 7.80 -2.39 -0.02 -0.45 16 41 H 0.41 15.91 6.33 -92.71 -0.59 15.32 16 42 H 0.15 4.27 7.60 -2.91 -0.02 4.25 16 43 H 0.19 2.23 8.06 -2.91 -0.02 2.21 16 44 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 45 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 46 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 47 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -80.02 381.49 2.57 -77.44 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.40 Total: 27.52 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 6.04 Total: 14.39 kcal Atomic # 7 Polarization: -136.41 SS G_CDS: -5.83 Total: -142.24 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.06 Total: -27.01 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -80.02 2.57 -77.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977528999.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.669 kcal (2) G-P(sol) polarization free energy of solvation -80.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds