Wall clock time and date at job start Tue Mar 31 2020 23:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 110.78113 * 2 1 4 4 C 1.54323 * 110.71848 * 236.76093 * 2 1 3 5 5 N 1.47027 * 107.27230 * 219.44243 * 4 2 1 6 6 C 1.36936 * 125.64877 * 178.98186 * 5 4 2 7 7 H 1.08004 * 120.00007 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99988 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00005 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99892 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47002 * 89.99893 * 10 8 6 12 12 H 1.48496 * 109.46976 * 209.99780 * 10 8 6 13 13 H 1.48494 * 109.47324 * 329.99890 * 10 8 6 14 14 C 1.47525 * 108.71517 * 358.94210 * 5 4 2 15 15 C 1.54913 * 104.78061 * 24.12105 * 14 5 4 16 16 H 1.08997 * 111.00250 * 204.90059 * 15 14 5 17 17 N 1.46503 * 111.00444 * 81.08655 * 15 14 5 18 18 C 1.34773 * 119.99976 * 89.58539 * 17 15 14 19 19 O 1.21610 * 120.00149 * 359.97438 * 18 17 15 20 20 C 1.47443 * 120.00192 * 179.97438 * 18 17 15 21 21 C 1.38953 * 121.16921 * 359.97359 * 20 18 17 22 22 N 1.32193 * 121.32020 * 180.02562 * 21 20 18 23 23 C 1.31202 * 123.69527 * 359.97438 * 22 21 20 24 24 C 1.40384 * 120.91603 * 359.97438 * 23 22 21 25 25 C 1.40397 * 122.14596 * 179.97438 * 24 23 22 26 26 C 1.36232 * 119.48547 * 179.74270 * 25 24 23 27 27 C 1.39291 * 121.10537 * 0.56883 * 26 25 24 28 28 C 1.36447 * 120.94904 * 359.42008 * 27 26 25 29 29 C 1.39688 * 119.43218 * 0.28322 * 28 27 26 30 30 H 1.09007 * 109.47040 * 296.76068 * 1 2 3 31 31 H 1.08997 * 109.47546 * 56.75875 * 1 2 3 32 32 H 1.09005 * 109.47329 * 176.76186 * 1 2 3 33 33 H 1.08997 * 109.47160 * 183.24346 * 3 2 1 34 34 H 1.09000 * 109.46944 * 303.23992 * 3 2 1 35 35 H 1.08998 * 109.46866 * 63.24245 * 3 2 1 36 36 H 1.08998 * 109.88468 * 338.86148 * 4 2 1 37 37 H 1.09001 * 109.88162 * 100.02986 * 4 2 1 38 38 H 0.97001 * 120.00032 * 179.97438 * 9 8 6 39 39 H 1.09000 * 110.37234 * 265.31020 * 14 5 4 40 40 H 1.09002 * 110.40776 * 142.94640 * 14 5 4 41 41 H 0.96995 * 120.00038 * 269.57627 * 17 15 14 42 42 H 1.08000 * 119.33819 * 359.97438 * 21 20 18 43 43 H 1.07998 * 119.54077 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.25565 * 0.02682 * 25 24 23 45 45 H 1.07998 * 119.44785 * 180.26825 * 26 25 24 46 46 H 1.08002 * 119.52847 * 179.70715 * 27 26 25 47 47 H 1.08000 * 120.28088 * 180.30368 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0759 -0.7912 -1.2073 5 7 3.2444 -1.5508 -0.7391 6 6 4.0042 -2.3969 -1.5019 7 1 3.7610 -2.5508 -2.5429 8 6 5.0864 -3.0577 -0.9370 9 7 5.3825 -2.8706 0.3317 10 14 6.1224 -4.2125 -1.9774 11 1 7.2323 -3.4516 -2.6055 12 1 6.6825 -5.2856 -1.1173 13 1 5.2761 -4.8182 -3.0366 14 6 3.4637 -1.2498 0.6884 15 6 2.0789 -0.7955 1.2137 16 1 2.1844 -0.1521 2.0872 17 7 1.2271 -1.9489 1.5144 18 6 1.2505 -2.5018 2.7433 19 8 1.9790 -2.0435 3.6024 20 6 0.3928 -3.6622 3.0461 21 6 -0.4491 -4.2050 2.0831 22 7 -1.2197 -5.2450 2.3515 23 6 -1.2567 -5.8414 3.5195 24 6 -0.4553 -5.3958 4.5826 25 6 -0.4746 -6.0141 5.8429 26 6 0.3298 -5.5399 6.8348 27 6 1.1631 -4.4440 6.6235 28 6 1.2070 -3.8193 5.4112 29 6 0.3994 -4.2835 4.3702 30 1 -0.3633 0.4628 0.9177 31 1 -0.3634 0.5633 -0.8595 32 1 -0.3634 -1.0261 -0.0581 33 1 3.1609 1.4062 -0.0581 34 1 1.6750 1.9700 -0.8595 35 1 1.7691 1.9343 0.9176 36 1 1.3129 -1.4758 -1.5776 37 1 2.3740 -0.1024 -1.9977 38 1 6.1385 -3.3326 0.7266 39 1 4.1933 -0.4477 0.7994 40 1 3.7961 -2.1425 1.2184 41 1 0.6462 -2.3145 0.8291 42 1 -0.4751 -3.7679 1.0958 43 1 -1.9126 -6.6869 3.6652 44 1 -1.1188 -6.8620 6.0232 45 1 0.3176 -6.0188 7.8028 46 1 1.7869 -4.0863 7.4293 47 1 1.8607 -2.9735 5.2577 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977647898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:41 Heat of formation + Delta-G solvation = 51.756183 kcal Electronic energy + Delta-G solvation = -29869.062964 eV Core-core repulsion = 26017.539509 eV Total energy + Delta-G solvation = -3851.523455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.87339 -39.51696 -37.82679 -37.38385 -33.88734 -33.21410 -32.65304 -31.21213 -30.71501 -29.85356 -28.05892 -26.85118 -25.63132 -24.93202 -23.55464 -23.41142 -22.51894 -20.76984 -19.99913 -18.78773 -18.03372 -17.39323 -17.31519 -16.71031 -16.01954 -15.61909 -14.95791 -14.86989 -14.69616 -14.36461 -13.95431 -13.83785 -13.78817 -13.68282 -13.36032 -13.17685 -12.80569 -12.67869 -12.23247 -12.19746 -11.97375 -11.92993 -11.77143 -11.43533 -11.31830 -11.18676 -11.01253 -10.78831 -10.42901 -10.21684 -10.06146 -9.99734 -9.88355 -9.80573 -9.69686 -9.18113 -9.15114 -8.69504 -8.47399 -8.10860 -6.82089 -5.63629 -3.06512 0.05065 0.83385 1.66073 2.86623 3.34453 3.40001 3.44943 3.47261 3.48499 4.09256 4.20787 4.46877 4.48669 4.63742 4.64240 4.80233 4.94792 5.00665 5.13998 5.19319 5.22056 5.26847 5.44538 5.51942 5.56493 5.62136 5.69957 5.76941 5.86542 5.90295 6.00214 6.03645 6.08312 6.15976 6.23783 6.30108 6.36920 6.43555 6.47676 6.52948 6.58690 6.67817 6.70327 6.83325 6.96469 7.46310 7.61967 7.81101 7.84458 7.94622 8.37864 8.58485 9.21467 9.83193 10.46846 11.39148 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010460 B = 0.003882 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.284502 B = 7211.784349 C = 8303.431196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.128 4.128 4 C 0.142 3.858 5 N -0.601 5.601 6 C -0.225 4.225 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.917 5.917 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.146 3.854 15 C 0.124 3.876 16 H 0.089 0.911 17 N -0.691 5.691 18 C 0.566 3.434 19 O -0.536 6.536 20 C -0.159 4.159 21 C 0.117 3.883 22 N -0.495 5.495 23 C 0.167 3.833 24 C -0.121 4.121 25 C -0.094 4.094 26 C -0.119 4.119 27 C -0.103 4.103 28 C -0.104 4.104 29 C 0.011 3.989 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.252 0.748 39 H 0.022 0.978 40 H 0.113 0.887 41 H 0.396 0.604 42 H 0.157 0.843 43 H 0.164 0.836 44 H 0.133 0.867 45 H 0.125 0.875 46 H 0.128 0.872 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.675 -1.133 9.816 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.016 3.984 5 N -0.327 5.327 6 C -0.354 4.354 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.021 3.979 15 C 0.018 3.982 16 H 0.107 0.893 17 N -0.341 5.341 18 C 0.352 3.648 19 O -0.415 6.415 20 C -0.164 4.164 21 C -0.027 4.027 22 N -0.202 5.202 23 C -0.005 4.005 24 C -0.123 4.123 25 C -0.114 4.114 26 C -0.137 4.137 27 C -0.123 4.123 28 C -0.121 4.121 29 C 0.006 3.994 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.040 0.960 40 H 0.131 0.869 41 H 0.231 0.769 42 H 0.174 0.826 43 H 0.181 0.819 44 H 0.151 0.849 45 H 0.143 0.857 46 H 0.146 0.854 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -14.421 -1.115 9.634 17.379 hybrid contribution 0.926 -0.554 -0.346 1.133 sum -13.496 -1.670 9.288 16.468 Atomic orbital electron populations 1.21727 0.94595 1.01176 1.01419 1.21851 0.94846 0.95813 0.96342 1.21683 1.01945 0.94010 1.00923 1.21422 0.90311 0.92986 0.93658 1.44486 1.30651 1.50277 1.07311 1.19028 1.06421 1.17057 0.92865 0.90548 1.24778 0.98748 1.00545 0.96313 1.69796 1.29918 1.46025 1.10777 0.86124 0.80344 0.80365 0.78966 1.21629 1.21734 1.20731 1.22334 0.89048 1.01419 0.85115 1.22587 0.93295 0.85830 0.96443 0.89290 1.45716 1.43779 1.32742 1.11848 1.17662 0.81925 0.82394 0.82777 1.90612 1.41419 1.63025 1.46461 1.22037 1.00654 0.99024 0.94711 1.22735 0.90353 0.91241 0.98399 1.67082 1.21442 1.09104 1.22539 1.23231 0.93866 0.96434 0.86960 1.19007 0.99453 0.97454 0.96357 1.20912 0.99291 0.99491 0.91661 1.20967 0.96466 0.96885 0.99383 1.21174 0.98133 0.95352 0.97605 1.21887 0.97874 1.00973 0.91409 1.18933 0.94682 0.93227 0.92592 0.92757 0.92579 0.93051 0.91707 0.92650 0.93041 0.96048 0.95763 0.93700 0.96028 0.86899 0.76851 0.82602 0.81884 0.84950 0.85693 0.85448 0.81509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 8.07 37.15 0.30 -1.40 16 2 C -0.09 -1.42 0.80 -152.68 -0.12 -1.54 16 3 C -0.13 -1.89 8.41 37.16 0.31 -1.58 16 4 C 0.14 2.80 6.41 -3.06 -0.02 2.78 16 5 N -0.60 -14.83 3.40 -169.98 -0.58 -15.41 16 6 C -0.23 -6.19 10.27 -15.06 -0.15 -6.34 16 7 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -27.10 10.09 55.49 0.56 -26.54 16 10 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.15 3.54 5.28 -2.47 -0.01 3.53 16 15 C 0.12 2.33 2.61 -65.78 -0.17 2.16 16 16 H 0.09 1.69 7.53 -51.93 -0.39 1.30 16 17 N -0.69 -12.10 4.58 -52.79 -0.24 -12.34 16 18 C 0.57 10.42 7.77 -12.51 -0.10 10.33 16 19 O -0.54 -11.13 13.43 5.27 0.07 -11.06 16 20 C -0.16 -2.59 6.07 -102.66 -0.62 -3.21 16 21 C 0.12 1.71 10.71 -17.13 -0.18 1.53 16 22 N -0.49 -6.87 10.22 -12.58 -0.13 -7.00 16 23 C 0.17 1.95 11.00 -17.01 -0.19 1.76 16 24 C -0.12 -1.52 5.74 -106.89 -0.61 -2.13 16 25 C -0.09 -0.92 9.82 -39.49 -0.39 -1.31 16 26 C -0.12 -1.16 9.94 -39.91 -0.40 -1.55 16 27 C -0.10 -1.20 9.96 -39.84 -0.40 -1.60 16 28 C -0.10 -1.55 9.32 -39.69 -0.37 -1.92 16 29 C 0.01 0.17 5.91 -104.74 -0.62 -0.45 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.64 6.42 -51.93 -0.33 0.30 16 33 H 0.06 1.09 7.57 -51.93 -0.39 0.70 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.02 0.41 7.76 -51.93 -0.40 0.01 16 37 H 0.02 0.49 7.84 -51.93 -0.41 0.08 16 38 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.02 0.57 7.80 -51.93 -0.41 0.16 16 40 H 0.11 3.20 5.88 -51.93 -0.31 2.90 16 41 H 0.40 6.23 5.13 -40.82 -0.21 6.02 16 42 H 0.16 2.01 6.44 -52.49 -0.34 1.67 16 43 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 44 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 46 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 47 H 0.17 2.81 5.24 -52.49 -0.28 2.53 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -32.84 374.72 -9.92 -42.77 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.39 Total: 7.94 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -3.84 Total: -1.27 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -0.39 Total: -61.29 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.07 Total: -11.06 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.84 -9.92 -42.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977647898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.522 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds