Wall clock time and date at job start Tue Mar 31 2020 23:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 110.78113 * 2 1 4 4 C 1.54323 * 110.71848 * 236.76093 * 2 1 3 5 5 N 1.47027 * 107.27230 * 219.44243 * 4 2 1 6 6 C 1.36936 * 125.64877 * 178.98186 * 5 4 2 7 7 H 1.08004 * 120.00007 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99988 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00005 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99892 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47002 * 89.99893 * 10 8 6 12 12 H 1.48496 * 109.46976 * 209.99780 * 10 8 6 13 13 H 1.48494 * 109.47324 * 329.99890 * 10 8 6 14 14 C 1.47525 * 108.71517 * 358.94210 * 5 4 2 15 15 C 1.54913 * 104.78061 * 24.12105 * 14 5 4 16 16 H 1.08997 * 111.00250 * 204.90059 * 15 14 5 17 17 N 1.46503 * 111.00444 * 81.08655 * 15 14 5 18 18 C 1.34773 * 119.99976 * 89.58539 * 17 15 14 19 19 O 1.21610 * 120.00149 * 359.97438 * 18 17 15 20 20 C 1.47443 * 120.00192 * 179.97438 * 18 17 15 21 21 C 1.38953 * 121.16921 * 359.97359 * 20 18 17 22 22 N 1.32193 * 121.32020 * 180.02562 * 21 20 18 23 23 C 1.31202 * 123.69527 * 359.97438 * 22 21 20 24 24 C 1.40384 * 120.91603 * 359.97438 * 23 22 21 25 25 C 1.40397 * 122.14596 * 179.97438 * 24 23 22 26 26 C 1.36232 * 119.48547 * 179.74270 * 25 24 23 27 27 C 1.39291 * 121.10537 * 0.56883 * 26 25 24 28 28 C 1.36447 * 120.94904 * 359.42008 * 27 26 25 29 29 C 1.39688 * 119.43218 * 0.28322 * 28 27 26 30 30 H 1.09007 * 109.47040 * 296.76068 * 1 2 3 31 31 H 1.08997 * 109.47546 * 56.75875 * 1 2 3 32 32 H 1.09005 * 109.47329 * 176.76186 * 1 2 3 33 33 H 1.08997 * 109.47160 * 183.24346 * 3 2 1 34 34 H 1.09000 * 109.46944 * 303.23992 * 3 2 1 35 35 H 1.08998 * 109.46866 * 63.24245 * 3 2 1 36 36 H 1.08998 * 109.88468 * 338.86148 * 4 2 1 37 37 H 1.09001 * 109.88162 * 100.02986 * 4 2 1 38 38 H 0.97001 * 120.00032 * 179.97438 * 9 8 6 39 39 H 1.09000 * 110.37234 * 265.31020 * 14 5 4 40 40 H 1.09002 * 110.40776 * 142.94640 * 14 5 4 41 41 H 0.96995 * 120.00038 * 269.57627 * 17 15 14 42 42 H 1.08000 * 119.33819 * 359.97438 * 21 20 18 43 43 H 1.07998 * 119.54077 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.25565 * 0.02682 * 25 24 23 45 45 H 1.07998 * 119.44785 * 180.26825 * 26 25 24 46 46 H 1.08002 * 119.52847 * 179.70715 * 27 26 25 47 47 H 1.08000 * 120.28088 * 180.30368 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0759 -0.7912 -1.2073 5 7 3.2444 -1.5508 -0.7391 6 6 4.0042 -2.3969 -1.5019 7 1 3.7610 -2.5508 -2.5429 8 6 5.0864 -3.0577 -0.9370 9 7 5.3825 -2.8706 0.3317 10 14 6.1224 -4.2125 -1.9774 11 1 7.2323 -3.4516 -2.6055 12 1 6.6825 -5.2856 -1.1173 13 1 5.2761 -4.8182 -3.0366 14 6 3.4637 -1.2498 0.6884 15 6 2.0789 -0.7955 1.2137 16 1 2.1844 -0.1521 2.0872 17 7 1.2271 -1.9489 1.5144 18 6 1.2505 -2.5018 2.7433 19 8 1.9790 -2.0435 3.6024 20 6 0.3928 -3.6622 3.0461 21 6 -0.4491 -4.2050 2.0831 22 7 -1.2197 -5.2450 2.3515 23 6 -1.2567 -5.8414 3.5195 24 6 -0.4553 -5.3958 4.5826 25 6 -0.4746 -6.0141 5.8429 26 6 0.3298 -5.5399 6.8348 27 6 1.1631 -4.4440 6.6235 28 6 1.2070 -3.8193 5.4112 29 6 0.3994 -4.2835 4.3702 30 1 -0.3633 0.4628 0.9177 31 1 -0.3634 0.5633 -0.8595 32 1 -0.3634 -1.0261 -0.0581 33 1 3.1609 1.4062 -0.0581 34 1 1.6750 1.9700 -0.8595 35 1 1.7691 1.9343 0.9176 36 1 1.3129 -1.4758 -1.5776 37 1 2.3740 -0.1024 -1.9977 38 1 6.1385 -3.3326 0.7266 39 1 4.1933 -0.4477 0.7994 40 1 3.7961 -2.1425 1.2184 41 1 0.6462 -2.3145 0.8291 42 1 -0.4751 -3.7679 1.0958 43 1 -1.9126 -6.6869 3.6652 44 1 -1.1188 -6.8620 6.0232 45 1 0.3176 -6.0188 7.8028 46 1 1.7869 -4.0863 7.4293 47 1 1.8607 -2.9735 5.2577 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977647898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:41 Heat of formation + Delta-G solvation = 31.159266 kcal Electronic energy + Delta-G solvation = -29869.956113 eV Core-core repulsion = 26017.539509 eV Total energy + Delta-G solvation = -3852.416604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.96781 -40.90879 -39.30883 -38.34262 -35.71637 -34.69107 -33.69496 -32.62352 -32.16615 -30.94980 -29.62464 -28.07045 -27.43981 -26.12160 -24.95843 -24.49756 -23.65865 -22.32922 -21.59020 -20.19544 -19.05583 -18.71940 -18.54083 -18.38889 -17.36423 -16.74412 -16.66631 -16.13932 -15.95624 -15.68847 -15.57222 -15.28356 -14.97934 -14.75771 -14.66289 -14.42596 -14.09963 -13.77942 -13.69734 -13.64534 -13.16757 -13.05937 -13.03733 -12.92054 -12.84862 -12.66264 -12.60297 -12.39220 -12.12651 -11.80165 -11.77699 -11.47929 -11.38550 -11.09965 -11.04534 -10.79378 -10.39826 -10.10187 -10.02978 -9.13691 -8.86314 -7.77607 -5.22528 -0.95632 -0.13436 0.67685 1.42107 1.43981 1.52551 1.75946 2.07878 2.24540 2.46816 3.06313 3.21582 3.32372 3.50033 3.54777 3.64040 3.68542 3.71262 3.88760 3.94805 4.00830 4.05006 4.27219 4.32682 4.39081 4.48783 4.49251 4.59993 4.74027 4.76832 4.82090 4.85252 4.90585 4.99718 5.03937 5.08162 5.13231 5.18654 5.28108 5.31371 5.40541 5.46057 5.50641 5.51565 5.56730 5.67272 5.80969 5.91808 6.29022 6.49956 6.81001 7.07254 7.19050 7.77393 8.40991 9.22926 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010460 B = 0.003882 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.284502 B = 7211.784349 C = 8303.431196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.137 3.863 5 N -0.618 5.618 6 C -0.232 4.232 7 H 0.085 0.915 8 C -0.068 4.068 9 N -0.949 5.949 10 Si 0.975 3.025 11 H -0.287 1.287 12 H -0.300 1.300 13 H -0.265 1.265 14 C 0.156 3.844 15 C 0.136 3.864 16 H 0.083 0.917 17 N -0.686 5.686 18 C 0.561 3.439 19 O -0.572 6.572 20 C -0.199 4.199 21 C 0.127 3.873 22 N -0.517 5.517 23 C 0.189 3.811 24 C -0.138 4.138 25 C -0.073 4.073 26 C -0.123 4.123 27 C -0.089 4.089 28 C -0.151 4.151 29 C -0.010 4.010 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.034 0.966 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.035 0.965 37 H 0.028 0.972 38 H 0.242 0.758 39 H -0.012 1.012 40 H 0.067 0.933 41 H 0.404 0.596 42 H 0.165 0.835 43 H 0.213 0.787 44 H 0.181 0.819 45 H 0.166 0.834 46 H 0.145 0.855 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.194 -3.040 10.110 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.074 4.074 3 C -0.183 4.183 4 C 0.012 3.988 5 N -0.344 5.344 6 C -0.361 4.361 7 H 0.103 0.897 8 C -0.260 4.260 9 N -0.599 5.599 10 Si 0.804 3.196 11 H -0.214 1.214 12 H -0.227 1.227 13 H -0.190 1.190 14 C 0.029 3.971 15 C 0.030 3.970 16 H 0.101 0.899 17 N -0.336 5.336 18 C 0.349 3.651 19 O -0.454 6.454 20 C -0.204 4.204 21 C -0.017 4.017 22 N -0.225 5.225 23 C 0.018 3.982 24 C -0.140 4.140 25 C -0.092 4.092 26 C -0.140 4.140 27 C -0.108 4.108 28 C -0.169 4.169 29 C -0.015 4.015 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.006 0.994 40 H 0.085 0.915 41 H 0.242 0.758 42 H 0.182 0.818 43 H 0.230 0.770 44 H 0.198 0.802 45 H 0.183 0.817 46 H 0.163 0.837 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.990 -3.008 9.888 20.747 hybrid contribution 1.983 -0.040 -0.320 2.009 sum -16.006 -3.048 9.568 18.895 Atomic orbital electron populations 1.21701 0.91164 1.02223 1.03180 1.21836 0.97374 0.95536 0.92676 1.21686 1.00063 0.93466 1.03105 1.21663 0.88833 0.93119 0.95143 1.44708 1.31764 1.50495 1.07419 1.19452 1.06453 1.16770 0.93461 0.89725 1.25609 1.00413 1.02636 0.97369 1.70119 1.30093 1.47194 1.12505 0.85113 0.78795 0.78119 0.77567 1.21370 1.22691 1.18992 1.21951 0.91596 0.98267 0.85264 1.22245 0.91040 0.86439 0.97245 0.89881 1.45603 1.43464 1.32475 1.12052 1.18176 0.81673 0.82779 0.82440 1.90598 1.43009 1.64246 1.47519 1.21879 1.02516 0.99644 0.96407 1.22875 0.89441 0.91122 0.98246 1.67214 1.22039 1.09407 1.23829 1.24073 0.92485 0.96086 0.85585 1.19345 0.99403 0.97005 0.98276 1.21484 0.98465 0.99449 0.89785 1.21408 0.95431 0.95912 1.01294 1.21509 0.97701 0.95150 0.96480 1.21686 0.99665 1.02003 0.93513 1.19191 0.95670 0.94497 0.92163 0.91581 0.90116 0.92531 0.94691 0.90028 0.91217 0.94710 0.95405 0.94854 0.99436 0.91468 0.75786 0.81780 0.77012 0.80154 0.81661 0.83718 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.07 71.98 0.58 -2.35 16 2 C -0.07 -2.34 0.80 -50.99 -0.04 -2.38 16 3 C -0.13 -3.62 8.41 71.98 0.61 -3.02 16 4 C 0.14 5.37 6.41 86.73 0.56 5.92 16 5 N -0.62 -31.66 3.40 -691.71 -2.35 -34.01 16 6 C -0.23 -13.11 10.27 84.03 0.86 -12.24 16 7 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 8 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 9 N -0.95 -59.74 10.09 21.65 0.22 -59.52 16 10 Si 0.98 47.20 29.55 68.60 2.03 49.23 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 C 0.16 8.10 5.28 86.84 0.46 8.56 16 15 C 0.14 5.42 2.61 46.38 0.12 5.54 16 16 H 0.08 3.39 7.53 -2.39 -0.02 3.38 16 17 N -0.69 -25.29 4.58 -439.19 -2.01 -27.30 16 18 C 0.56 22.37 7.77 86.67 0.67 23.04 16 19 O -0.57 -26.37 13.43 -4.06 -0.05 -26.43 16 20 C -0.20 -6.83 6.07 -18.59 -0.11 -6.94 16 21 C 0.13 3.73 10.71 84.81 0.91 4.64 16 22 N -0.52 -13.46 10.22 -193.72 -1.98 -15.44 16 23 C 0.19 3.77 11.00 85.31 0.94 4.71 16 24 C -0.14 -3.17 5.74 -21.33 -0.12 -3.29 16 25 C -0.07 -1.09 9.82 22.33 0.22 -0.88 16 26 C -0.12 -1.94 9.94 22.06 0.22 -1.72 16 27 C -0.09 -2.01 9.96 22.10 0.22 -1.79 16 28 C -0.15 -4.79 9.32 22.20 0.21 -4.58 16 29 C -0.01 -0.32 5.91 -19.94 -0.12 -0.43 16 30 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.27 6.42 -2.38 -0.02 1.26 16 33 H 0.03 1.20 7.57 -2.39 -0.02 1.18 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.03 1.29 7.76 -2.39 -0.02 1.27 16 37 H 0.03 1.09 7.84 -2.39 -0.02 1.07 16 38 H 0.24 15.02 8.31 -92.71 -0.77 14.25 16 39 H -0.01 -0.69 7.80 -2.39 -0.02 -0.71 16 40 H 0.07 4.16 5.88 -2.39 -0.01 4.14 16 41 H 0.40 13.05 5.13 -92.71 -0.48 12.58 16 42 H 0.17 4.26 6.44 -2.91 -0.02 4.24 16 43 H 0.21 1.99 8.06 -2.91 -0.02 1.97 16 44 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 45 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 46 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 47 H 0.13 5.07 5.24 -2.91 -0.02 5.05 16 Total: -1.00 -79.92 374.72 3.02 -76.90 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.52 Total: 27.29 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 6.64 Total: 9.28 kcal Atomic # 7 Polarization: -130.15 SS G_CDS: -6.12 Total: -136.27 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.05 Total: -26.43 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -79.92 3.02 -76.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977647898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.060 kcal (2) G-P(sol) polarization free energy of solvation -79.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds