Wall clock time and date at job start Tue Mar 31 2020 22:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39915 * 126.00113 * 2 1 4 4 C 1.38325 * 107.12347 * 180.02562 * 3 2 1 5 5 C 1.41358 * 131.72982 * 179.97438 * 4 3 2 6 6 C 1.35519 * 119.55251 * 179.70634 * 5 4 3 7 7 C 1.46453 * 118.95684 * 0.54122 * 6 5 4 8 8 C 1.47501 * 120.19829 * 179.75792 * 7 6 5 9 9 O 1.21600 * 119.99963 * 179.72477 * 8 7 6 10 10 N 1.34772 * 119.99861 * 359.97438 * 8 7 6 11 11 C 1.46502 * 120.00120 * 179.72384 * 10 8 7 12 12 C 1.52998 * 109.47353 * 180.02562 * 11 10 8 13 13 H 1.09008 * 115.51559 * 330.41367 * 12 11 10 14 14 C 1.52997 * 117.44541 * 185.00357 * 12 11 10 15 15 H 1.09003 * 119.53766 * 4.11660 * 14 12 11 16 16 C 1.54381 * 118.12374 * 159.21157 * 14 12 11 17 17 N 1.48142 * 104.61990 * 87.19314 * 16 14 12 18 18 C 1.36939 * 127.84178 * 140.41462 * 17 16 14 19 19 H 1.08000 * 119.99634 * 344.38592 * 18 17 16 20 20 C 1.38806 * 119.99871 * 164.38750 * 18 17 16 21 21 N 1.31616 * 120.00633 * 350.81126 * 20 18 17 22 22 Si 1.86809 * 119.99886 * 170.81448 * 20 18 17 23 23 H 1.48499 * 109.47231 * 94.80938 * 22 20 18 24 24 H 1.48500 * 109.47127 * 214.81277 * 22 20 18 25 25 H 1.48497 * 109.46895 * 334.80952 * 22 20 18 26 26 C 1.48148 * 104.32248 * 320.41342 * 17 16 14 27 27 C 1.52994 * 117.44255 * 115.76035 * 12 11 10 28 28 H 1.08993 * 119.54367 * 355.88603 * 27 12 11 29 29 C 1.36306 * 119.60274 * 359.48313 * 7 6 5 30 30 N 1.36531 * 120.65441 * 0.23036 * 29 7 6 31 31 C 1.35275 * 125.99830 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.47377 * 89.96739 * 1 2 3 33 33 H 1.08994 * 109.47588 * 209.97183 * 1 2 3 34 34 H 1.09003 * 109.46554 * 329.97098 * 1 2 3 35 35 H 1.07997 * 126.44131 * 0.02562 * 3 2 1 36 36 H 1.08006 * 120.22459 * 0.02765 * 5 4 3 37 37 H 1.08000 * 120.52120 * 180.29778 * 6 5 4 38 38 H 0.97003 * 119.99923 * 359.73032 * 10 8 7 39 39 H 1.09002 * 109.47062 * 300.00767 * 11 10 8 40 40 H 1.09003 * 109.46847 * 60.00247 * 11 10 8 41 41 H 1.09006 * 110.40515 * 205.97653 * 16 14 12 42 42 H 1.09001 * 110.41066 * 328.40250 * 16 14 12 43 43 H 0.96998 * 120.00493 * 180.02562 * 21 20 18 44 44 H 1.09000 * 110.40850 * 158.37368 * 26 17 16 45 45 H 1.09001 * 110.40495 * 280.68700 * 26 17 16 46 46 H 1.08004 * 119.67477 * 180.25257 * 29 7 6 47 47 H 1.08001 * 125.52775 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1319 0.0000 4 6 3.6383 0.6844 -0.0006 5 6 4.8699 1.3781 -0.0013 6 6 6.0308 0.6791 0.0042 7 6 5.9773 -0.7845 -0.0012 8 6 7.2241 -1.5725 -0.0007 9 8 7.1754 -2.7876 -0.0002 10 7 8.4173 -0.9459 0.0042 11 6 9.6557 -1.7286 0.0108 12 6 10.8575 -0.7817 0.0160 13 1 10.6992 0.1805 -0.4711 14 6 12.2490 -1.4079 -0.0952 15 1 12.3440 -2.4838 -0.2414 16 6 13.4125 -0.5147 -0.5766 17 7 13.9257 0.1275 0.6559 18 6 15.2296 0.3723 0.9952 19 1 16.0281 -0.1257 0.4653 20 6 15.5249 1.2604 2.0203 21 7 14.5717 2.0016 2.5440 22 14 17.2754 1.4037 2.6565 23 1 17.9644 2.5213 1.9626 24 1 17.2510 1.6682 4.1176 25 1 18.0024 0.1355 2.3952 26 6 12.7081 0.4448 1.4380 27 6 11.7705 -0.8081 1.2434 28 1 11.5092 -1.4372 2.0942 29 6 4.7683 -1.4140 -0.0010 30 7 3.6084 -0.6938 -0.0005 31 6 2.3021 -1.0944 -0.0005 32 1 -0.3634 0.0006 -1.0277 33 1 -0.3634 -0.8902 0.5133 34 1 -0.3632 0.8898 0.5143 35 1 2.0036 2.1616 0.0004 36 1 4.8856 2.4581 -0.0011 37 1 6.9806 1.1932 0.0086 38 1 8.4561 0.0233 0.0035 39 1 9.6841 -2.3563 0.9015 40 1 9.6924 -2.3579 -0.8785 41 1 14.1901 -1.1211 -1.0412 42 1 13.0492 0.2392 -1.2750 43 1 14.7782 2.6225 3.2601 44 1 12.9542 0.5624 2.4933 45 1 12.2359 1.3497 1.0555 46 1 4.7274 -2.4933 -0.0009 47 1 1.9598 -2.1188 -0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978242418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:39 Heat of formation + Delta-G solvation = 97.693777 kcal Electronic energy + Delta-G solvation = -27371.723681 eV Core-core repulsion = 23522.192230 eV Total energy + Delta-G solvation = -3849.531451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.46697 -39.94828 -38.68442 -36.60783 -35.12507 -33.70062 -33.27250 -31.85595 -30.85040 -28.51303 -27.91145 -27.03401 -26.85219 -24.97230 -23.37611 -22.78410 -21.26544 -21.07574 -20.37072 -19.64038 -19.29878 -18.15455 -17.29160 -16.82853 -16.58454 -16.02163 -15.88203 -15.23807 -14.99255 -14.78909 -14.66017 -14.36062 -13.94917 -13.65135 -13.49018 -13.44356 -13.26276 -13.13471 -12.84594 -12.70491 -12.48956 -11.98868 -11.89384 -11.79146 -11.28637 -11.26673 -11.12678 -10.84570 -10.72676 -10.71400 -10.31962 -10.22611 -10.14479 -9.78206 -9.49725 -9.15270 -9.04674 -8.69610 -8.65971 -7.73230 -6.90138 -5.83441 -3.17605 0.37797 0.82475 2.23748 2.33426 2.72730 3.07187 3.35687 3.36075 3.41773 3.43857 4.10854 4.13889 4.32400 4.42908 4.45921 4.54484 4.60985 4.82140 4.89222 4.93358 5.17175 5.28420 5.31205 5.33186 5.34530 5.38835 5.43154 5.47071 5.57300 5.63344 5.70903 5.73314 5.85922 5.87389 5.90990 5.92969 6.08779 6.09139 6.27170 6.50643 6.52719 6.59053 6.63270 6.68218 6.87441 6.90575 7.30033 7.34247 7.49283 7.68444 8.00406 8.17499 9.07784 9.70505 10.47442 11.30901 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025642 B = 0.001743 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.688604 B =16056.043934 C =16813.673883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.115 4.115 3 C -0.198 4.198 4 C 0.046 3.954 5 C -0.088 4.088 6 C -0.104 4.104 7 C -0.169 4.169 8 C 0.571 3.429 9 O -0.546 6.546 10 N -0.713 5.713 11 C 0.155 3.845 12 C -0.155 4.155 13 H 0.103 0.897 14 C -0.165 4.165 15 H 0.103 0.897 16 C 0.154 3.846 17 N -0.594 5.594 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.186 3.814 27 C -0.169 4.169 28 H 0.106 0.894 29 C 0.132 3.868 30 N -0.355 5.355 31 C -0.051 4.051 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.403 0.597 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.025 0.975 43 H 0.254 0.746 44 H 0.087 0.913 45 H 0.026 0.974 46 H 0.175 0.825 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.257 -3.292 -5.898 27.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C -0.222 4.222 4 C -0.058 4.058 5 C -0.107 4.107 6 C -0.125 4.125 7 C -0.175 4.175 8 C 0.357 3.643 9 O -0.425 6.425 10 N -0.363 5.363 11 C 0.032 3.968 12 C -0.174 4.174 13 H 0.121 0.879 14 C -0.185 4.185 15 H 0.121 0.879 16 C 0.028 3.972 17 N -0.318 5.318 18 C -0.355 4.355 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.562 5.562 22 Si 0.743 3.257 23 H -0.215 1.215 24 H -0.215 1.215 25 H -0.205 1.205 26 C 0.060 3.940 27 C -0.189 4.189 28 H 0.124 0.876 29 C 0.008 3.992 30 N -0.020 5.020 31 C -0.177 4.177 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.164 0.836 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.239 0.761 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.042 0.958 43 H 0.064 0.936 44 H 0.106 0.894 45 H 0.044 0.956 46 H 0.192 0.808 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -25.923 -4.222 -5.727 26.882 hybrid contribution 0.953 0.509 0.361 1.139 sum -24.970 -3.713 -5.366 25.808 Atomic orbital electron populations 1.20224 0.89318 1.02533 1.02046 1.19519 0.95938 0.92115 1.04357 1.21025 0.89530 0.98924 1.12695 1.18967 0.95688 0.81802 1.09331 1.20513 0.89116 1.00396 1.00667 1.22017 0.98962 0.91322 1.00155 1.20248 0.92607 0.93952 1.10666 1.17638 0.83068 0.86954 0.76608 1.90800 1.87456 1.13403 1.50840 1.45865 1.05377 1.10865 1.74242 1.20926 0.80724 0.92940 1.02225 1.22544 0.90239 1.00111 1.04506 0.87883 1.23792 0.92633 0.99019 1.03055 0.87908 1.21161 0.92490 0.93421 0.90177 1.45153 1.02087 1.69450 1.15069 1.19005 0.81291 1.19477 1.15764 0.90559 1.24892 0.97872 0.97029 1.00455 1.69888 1.31216 1.26372 1.28739 0.86101 0.83709 0.77813 0.78125 1.21490 1.21545 1.20480 1.21649 0.83960 0.89207 0.99168 1.25101 1.00014 1.03317 0.90479 0.87613 1.21705 0.83142 0.98241 0.96062 1.41436 1.05396 1.07099 1.48057 1.21737 0.79662 1.00109 1.16193 0.91439 0.91754 0.91440 0.83582 0.83428 0.84136 0.76078 0.91149 0.91052 0.93090 0.95758 0.93551 0.89435 0.95583 0.80833 0.81262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.36 36.00 0.37 -0.09 16 2 C -0.12 -0.97 6.10 -105.05 -0.64 -1.61 16 3 C -0.20 -1.79 10.91 -38.92 -0.42 -2.21 16 4 C 0.05 0.47 6.71 -83.94 -0.56 -0.10 16 5 C -0.09 -0.76 10.09 -39.37 -0.40 -1.16 16 6 C -0.10 -0.93 9.73 -37.25 -0.36 -1.29 16 7 C -0.17 -1.81 5.98 -103.51 -0.62 -2.43 16 8 C 0.57 7.22 7.77 -12.49 -0.10 7.12 16 9 O -0.55 -8.56 16.28 5.28 0.09 -8.48 16 10 N -0.71 -8.22 5.51 -61.36 -0.34 -8.55 16 11 C 0.15 2.01 5.95 -4.04 -0.02 1.99 16 12 C -0.15 -2.27 5.34 -90.62 -0.48 -2.76 16 13 H 0.10 1.49 8.04 -51.92 -0.42 1.07 16 14 C -0.16 -2.82 6.77 -89.22 -0.60 -3.43 16 15 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 16 C 0.15 3.14 7.04 -2.41 -0.02 3.13 16 17 N -0.59 -14.96 3.38 -166.73 -0.56 -15.53 16 18 C -0.23 -6.26 10.35 -15.06 -0.16 -6.42 16 19 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 20 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 21 N -0.92 -26.41 10.87 55.49 0.60 -25.80 16 22 Si 0.91 21.69 29.56 -169.99 -5.03 16.67 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 C 0.19 4.33 5.76 -0.57 0.00 4.33 16 27 C -0.17 -3.07 7.03 -87.38 -0.61 -3.68 16 28 H 0.11 1.83 8.12 -51.93 -0.42 1.41 16 29 C 0.13 1.35 10.45 -16.16 -0.17 1.18 16 30 N -0.36 -3.60 2.93 -60.50 -0.18 -3.78 16 31 C -0.05 -0.44 11.49 -16.47 -0.19 -0.63 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.15 0.90 8.06 -52.48 -0.42 0.47 16 37 H 0.14 0.95 6.58 -52.49 -0.35 0.60 16 38 H 0.40 3.82 6.50 -40.82 -0.27 3.55 16 39 H 0.07 0.98 7.94 -51.93 -0.41 0.56 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.09 2.30 6.52 -51.93 -0.34 1.96 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.17 1.60 7.56 -52.48 -0.40 1.20 16 47 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 389.81 15.07 5.87 5.87 Total: -1.00 -32.82 389.81 -11.42 -44.24 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.79 Total: 3.64 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -5.08 Total: -8.28 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.48 Total: -53.66 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.48 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.82 -11.42 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978242418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.930 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds