Wall clock time and date at job start Tue Mar 31 2020 22:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39915 * 126.00113 * 2 1 4 4 C 1.38325 * 107.12347 * 180.02562 * 3 2 1 5 5 C 1.41358 * 131.72982 * 179.97438 * 4 3 2 6 6 C 1.35519 * 119.55251 * 179.70634 * 5 4 3 7 7 C 1.46453 * 118.95684 * 0.54122 * 6 5 4 8 8 C 1.47501 * 120.19829 * 179.75792 * 7 6 5 9 9 O 1.21600 * 119.99963 * 179.72477 * 8 7 6 10 10 N 1.34772 * 119.99861 * 359.97438 * 8 7 6 11 11 C 1.46502 * 120.00120 * 179.72384 * 10 8 7 12 12 C 1.52998 * 109.47353 * 180.02562 * 11 10 8 13 13 H 1.09008 * 115.51559 * 330.41367 * 12 11 10 14 14 C 1.52997 * 117.44541 * 185.00357 * 12 11 10 15 15 H 1.09003 * 119.53766 * 4.11660 * 14 12 11 16 16 C 1.54381 * 118.12374 * 159.21157 * 14 12 11 17 17 N 1.48142 * 104.61990 * 87.19314 * 16 14 12 18 18 C 1.36939 * 127.84178 * 140.41462 * 17 16 14 19 19 H 1.08000 * 119.99634 * 344.38592 * 18 17 16 20 20 C 1.38806 * 119.99871 * 164.38750 * 18 17 16 21 21 N 1.31616 * 120.00633 * 350.81126 * 20 18 17 22 22 Si 1.86809 * 119.99886 * 170.81448 * 20 18 17 23 23 H 1.48499 * 109.47231 * 94.80938 * 22 20 18 24 24 H 1.48500 * 109.47127 * 214.81277 * 22 20 18 25 25 H 1.48497 * 109.46895 * 334.80952 * 22 20 18 26 26 C 1.48148 * 104.32248 * 320.41342 * 17 16 14 27 27 C 1.52994 * 117.44255 * 115.76035 * 12 11 10 28 28 H 1.08993 * 119.54367 * 355.88603 * 27 12 11 29 29 C 1.36306 * 119.60274 * 359.48313 * 7 6 5 30 30 N 1.36531 * 120.65441 * 0.23036 * 29 7 6 31 31 C 1.35275 * 125.99830 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.47377 * 89.96739 * 1 2 3 33 33 H 1.08994 * 109.47588 * 209.97183 * 1 2 3 34 34 H 1.09003 * 109.46554 * 329.97098 * 1 2 3 35 35 H 1.07997 * 126.44131 * 0.02562 * 3 2 1 36 36 H 1.08006 * 120.22459 * 0.02765 * 5 4 3 37 37 H 1.08000 * 120.52120 * 180.29778 * 6 5 4 38 38 H 0.97003 * 119.99923 * 359.73032 * 10 8 7 39 39 H 1.09002 * 109.47062 * 300.00767 * 11 10 8 40 40 H 1.09003 * 109.46847 * 60.00247 * 11 10 8 41 41 H 1.09006 * 110.40515 * 205.97653 * 16 14 12 42 42 H 1.09001 * 110.41066 * 328.40250 * 16 14 12 43 43 H 0.96998 * 120.00493 * 180.02562 * 21 20 18 44 44 H 1.09000 * 110.40850 * 158.37368 * 26 17 16 45 45 H 1.09001 * 110.40495 * 280.68700 * 26 17 16 46 46 H 1.08004 * 119.67477 * 180.25257 * 29 7 6 47 47 H 1.08001 * 125.52775 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1319 0.0000 4 6 3.6383 0.6844 -0.0006 5 6 4.8699 1.3781 -0.0013 6 6 6.0308 0.6791 0.0042 7 6 5.9773 -0.7845 -0.0012 8 6 7.2241 -1.5725 -0.0007 9 8 7.1754 -2.7876 -0.0002 10 7 8.4173 -0.9459 0.0042 11 6 9.6557 -1.7286 0.0108 12 6 10.8575 -0.7817 0.0160 13 1 10.6992 0.1805 -0.4711 14 6 12.2490 -1.4079 -0.0952 15 1 12.3440 -2.4838 -0.2414 16 6 13.4125 -0.5147 -0.5766 17 7 13.9257 0.1275 0.6559 18 6 15.2296 0.3723 0.9952 19 1 16.0281 -0.1257 0.4653 20 6 15.5249 1.2604 2.0203 21 7 14.5717 2.0016 2.5440 22 14 17.2754 1.4037 2.6565 23 1 17.9644 2.5213 1.9626 24 1 17.2510 1.6682 4.1176 25 1 18.0024 0.1355 2.3952 26 6 12.7081 0.4448 1.4380 27 6 11.7705 -0.8081 1.2434 28 1 11.5092 -1.4372 2.0942 29 6 4.7683 -1.4140 -0.0010 30 7 3.6084 -0.6938 -0.0005 31 6 2.3021 -1.0944 -0.0005 32 1 -0.3634 0.0006 -1.0277 33 1 -0.3634 -0.8902 0.5133 34 1 -0.3632 0.8898 0.5143 35 1 2.0036 2.1616 0.0004 36 1 4.8856 2.4581 -0.0011 37 1 6.9806 1.1932 0.0086 38 1 8.4561 0.0233 0.0035 39 1 9.6841 -2.3563 0.9015 40 1 9.6924 -2.3579 -0.8785 41 1 14.1901 -1.1211 -1.0412 42 1 13.0492 0.2392 -1.2750 43 1 14.7782 2.6225 3.2601 44 1 12.9542 0.5624 2.4933 45 1 12.2359 1.3497 1.0555 46 1 4.7274 -2.4933 -0.0009 47 1 1.9598 -2.1188 -0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978242418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:38 Heat of formation + Delta-G solvation = 80.403936 kcal Electronic energy + Delta-G solvation = -27372.473425 eV Core-core repulsion = 23522.192230 eV Total energy + Delta-G solvation = -3850.281195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.13622 -40.99448 -40.12585 -37.31994 -36.41495 -35.09212 -34.19456 -32.84178 -32.34330 -29.42225 -28.78357 -28.70939 -27.92662 -26.52228 -24.18587 -23.51098 -22.83117 -22.00563 -21.58336 -20.85609 -20.52986 -18.93891 -18.80826 -18.11513 -17.30952 -16.98688 -16.83212 -16.65941 -16.12985 -16.02694 -15.57486 -15.35164 -15.19027 -14.98458 -14.60799 -14.44316 -14.23783 -14.09060 -13.87248 -13.81454 -13.36475 -13.17938 -13.06323 -12.89346 -12.71481 -12.62623 -12.35858 -12.30571 -11.95251 -11.92877 -11.90084 -11.75203 -11.41384 -11.33542 -10.93701 -10.68018 -10.59895 -10.12652 -9.34027 -8.89890 -8.40725 -7.92050 -5.27833 -0.38003 0.15394 1.46407 1.47628 1.51153 1.57438 1.58752 1.98343 2.14864 2.48003 2.58716 2.77367 3.26161 3.45195 3.55074 3.60025 3.72519 3.79790 3.85973 3.87121 3.98700 4.18865 4.27439 4.29897 4.37230 4.42302 4.47895 4.55466 4.66505 4.71655 4.77462 4.80889 4.93860 4.95211 5.00338 5.03259 5.03462 5.17532 5.24942 5.27178 5.35847 5.40367 5.44833 5.49626 5.53560 5.67213 5.90551 5.94042 6.18657 6.24072 6.42281 7.01823 7.06345 7.68735 8.47014 9.21557 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025642 B = 0.001743 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.688604 B =16056.043934 C =16813.673883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.123 4.123 3 C -0.205 4.205 4 C 0.019 3.981 5 C -0.088 4.088 6 C -0.112 4.112 7 C -0.180 4.180 8 C 0.573 3.427 9 O -0.580 6.580 10 N -0.705 5.705 11 C 0.163 3.837 12 C -0.113 4.113 13 H 0.111 0.889 14 C -0.159 4.159 15 H 0.125 0.875 16 C 0.148 3.852 17 N -0.621 5.621 18 C -0.241 4.241 19 H 0.079 0.921 20 C -0.061 4.061 21 N -0.946 5.946 22 Si 0.978 3.022 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.269 1.269 26 C 0.190 3.810 27 C -0.178 4.178 28 H 0.115 0.885 29 C 0.128 3.872 30 N -0.364 5.364 31 C -0.063 4.063 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.162 0.838 36 H 0.172 0.828 37 H 0.160 0.840 38 H 0.414 0.586 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.028 0.972 43 H 0.250 0.750 44 H 0.049 0.951 45 H 0.009 0.991 46 H 0.178 0.822 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.604 -3.689 -6.718 28.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C -0.229 4.229 4 C -0.084 4.084 5 C -0.107 4.107 6 C -0.132 4.132 7 C -0.186 4.186 8 C 0.361 3.639 9 O -0.462 6.462 10 N -0.357 5.357 11 C 0.040 3.960 12 C -0.132 4.132 13 H 0.129 0.871 14 C -0.179 4.179 15 H 0.143 0.857 16 C 0.023 3.977 17 N -0.345 5.345 18 C -0.370 4.370 19 H 0.097 0.903 20 C -0.255 4.255 21 N -0.594 5.594 22 Si 0.806 3.194 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.193 1.193 26 C 0.064 3.936 27 C -0.198 4.198 28 H 0.133 0.867 29 C 0.005 3.995 30 N -0.030 5.030 31 C -0.188 4.188 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.180 0.820 36 H 0.189 0.811 37 H 0.178 0.822 38 H 0.252 0.748 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.027 0.973 46 H 0.195 0.805 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -27.286 -4.611 -6.576 28.444 hybrid contribution 1.259 0.647 0.565 1.524 sum -26.027 -3.964 -6.011 27.005 Atomic orbital electron populations 1.20287 0.87379 1.03434 1.02817 1.19948 0.97373 0.91783 1.03583 1.21394 0.89437 1.00009 1.12067 1.19400 0.96674 0.82070 1.10263 1.20836 0.88533 1.01606 0.99706 1.22197 1.00036 0.90449 1.00490 1.20165 0.91796 0.94773 1.11855 1.17853 0.83683 0.86585 0.75754 1.90780 1.87942 1.14905 1.52583 1.45746 1.04719 1.11415 1.73783 1.20764 0.80348 0.92433 1.02491 1.22437 0.89704 1.00397 1.00697 0.87128 1.23723 0.92937 0.99666 1.01573 0.85670 1.21311 0.93847 0.93758 0.88760 1.45464 1.01908 1.69892 1.17247 1.19377 0.82772 1.19154 1.15707 0.90280 1.25708 1.01675 0.97152 1.00988 1.70076 1.33013 1.27115 1.29176 0.85078 0.79325 0.78024 0.76969 1.21186 1.21935 1.19340 1.21406 0.84611 0.91006 0.96593 1.24772 1.01720 1.01292 0.92011 0.86662 1.21810 0.83409 0.98567 0.95754 1.41593 1.05669 1.07298 1.48404 1.22268 0.79315 1.01438 1.15803 0.90636 0.90701 0.90737 0.82021 0.81057 0.82205 0.74760 0.91538 0.90212 0.92540 0.95444 0.94114 0.93271 0.97331 0.80474 0.79244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.36 71.24 0.74 0.00 16 2 C -0.12 -1.88 6.10 -20.14 -0.12 -2.00 16 3 C -0.20 -3.42 10.91 22.70 0.25 -3.17 16 4 C 0.02 0.37 6.71 38.99 0.26 0.63 16 5 C -0.09 -1.39 10.09 22.41 0.23 -1.16 16 6 C -0.11 -1.82 9.73 23.78 0.23 -1.59 16 7 C -0.18 -3.68 5.98 -19.15 -0.11 -3.80 16 8 C 0.57 13.82 7.77 86.69 0.67 14.49 16 9 O -0.58 -17.76 16.28 -4.03 -0.07 -17.83 16 10 N -0.71 -14.86 5.51 -466.29 -2.57 -17.43 16 11 C 0.16 3.83 5.95 86.38 0.51 4.35 16 12 C -0.11 -3.07 5.34 -10.80 -0.06 -3.12 16 13 H 0.11 2.91 8.04 -2.38 -0.02 2.90 16 14 C -0.16 -5.13 6.77 -9.89 -0.07 -5.19 16 15 H 0.13 3.54 8.14 -2.39 -0.02 3.52 16 16 C 0.15 5.93 7.04 86.53 0.61 6.54 16 17 N -0.62 -31.61 3.38 -681.42 -2.30 -33.92 16 18 C -0.24 -13.46 10.35 84.03 0.87 -12.59 16 19 H 0.08 4.23 7.85 -2.91 -0.02 4.21 16 20 C -0.06 -3.46 5.40 84.86 0.46 -3.01 16 21 N -0.95 -56.18 10.87 21.65 0.24 -55.95 16 22 Si 0.98 45.17 29.56 68.60 2.03 47.20 16 23 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 26 C 0.19 9.03 5.76 87.73 0.51 9.53 16 27 C -0.18 -6.29 7.03 -8.70 -0.06 -6.36 16 28 H 0.12 3.88 8.12 -2.39 -0.02 3.86 16 29 C 0.13 2.56 10.45 83.51 0.87 3.44 16 30 N -0.36 -7.08 2.93 -345.32 -1.01 -8.09 16 31 C -0.06 -1.02 11.49 83.26 0.96 -0.06 16 32 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 36 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.16 1.82 6.58 -2.91 -0.02 1.80 16 38 H 0.41 6.89 6.50 -92.71 -0.60 6.28 16 39 H 0.07 1.69 7.94 -2.39 -0.02 1.67 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 42 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.05 2.69 6.52 -2.39 -0.02 2.68 16 45 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.18 3.25 7.56 -2.91 -0.02 3.22 16 47 H 0.19 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -72.23 389.81 3.44 -68.79 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.38 Total: 20.27 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 6.74 Total: -3.05 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -5.65 Total: -115.39 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.07 Total: -17.83 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -72.23 3.44 -68.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978242418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.197 kcal (2) G-P(sol) polarization free energy of solvation -72.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds