Wall clock time and date at job start Tue Mar 31 2020 22:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38943 * 119.67519 * 2 1 4 4 C 1.36439 * 120.61487 * 179.97438 * 3 2 1 5 5 C 1.40101 * 119.83210 * 0.02562 * 4 3 2 6 6 C 1.41588 * 133.37920 * 179.97438 * 5 4 3 7 7 C 1.35869 * 107.72539 * 180.02562 * 6 5 4 8 8 C 1.47057 * 125.43162 * 179.97438 * 7 6 5 9 9 O 1.21655 * 119.99840 * 0.02811 * 8 7 6 10 10 N 1.34773 * 120.00216 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00083 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47134 * 180.02562 * 11 10 8 13 13 H 1.09004 * 115.51873 * 29.58526 * 12 11 10 14 14 C 1.52999 * 117.44521 * 244.23843 * 12 11 10 15 15 H 1.09003 * 119.53555 * 4.12190 * 14 12 11 16 16 C 1.57695 * 116.11239 * 161.63702 * 14 12 11 17 17 N 1.48148 * 104.67336 * 87.30997 * 16 14 12 18 18 C 1.36931 * 127.83528 * 139.77127 * 17 16 14 19 19 H 1.08000 * 120.00405 * 344.34299 * 18 17 16 20 20 C 1.38810 * 119.99926 * 164.33818 * 18 17 16 21 21 N 1.31625 * 119.99781 * 350.57121 * 20 18 17 22 22 Si 1.86796 * 120.00434 * 170.57420 * 20 18 17 23 23 H 1.48504 * 109.47042 * 59.99735 * 22 20 18 24 24 H 1.48500 * 109.47357 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47094 * 300.00078 * 22 20 18 26 26 C 1.48145 * 104.32196 * 319.77648 * 17 16 14 27 27 C 1.52999 * 117.44419 * 174.99756 * 12 11 10 28 28 H 1.08995 * 119.54163 * 355.88507 * 27 12 11 29 29 N 1.38146 * 109.13855 * 359.97438 * 7 6 5 30 30 H 0.96997 * 125.60402 * 179.97438 * 29 7 6 31 31 C 1.37476 * 108.78861 * 0.24834 * 29 7 6 32 32 C 1.37671 * 119.67529 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47183 * 90.00201 * 1 2 3 34 34 H 1.08996 * 109.46911 * 209.99896 * 1 2 3 35 35 H 1.08997 * 109.47496 * 329.99740 * 1 2 3 36 36 H 1.07993 * 119.69146 * 359.97438 * 3 2 1 37 37 H 1.08006 * 120.08046 * 180.02562 * 4 3 2 38 38 H 1.07993 * 126.13688 * 0.02562 * 6 5 4 39 39 H 0.97005 * 119.99881 * 0.02562 * 10 8 7 40 40 H 1.08997 * 109.47467 * 300.00314 * 11 10 8 41 41 H 1.09001 * 109.47295 * 60.00103 * 11 10 8 42 42 H 1.09004 * 110.92011 * 328.23223 * 16 14 12 43 43 H 1.09005 * 109.93467 * 205.89320 * 16 14 12 44 44 H 0.97003 * 119.99532 * 180.02562 * 21 20 18 45 45 H 1.08996 * 110.40779 * 280.79860 * 26 17 16 46 46 H 1.08998 * 110.40149 * 158.37308 * 26 17 16 47 47 H 1.07996 * 120.09600 * 0.04233 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2072 0.0000 4 6 3.5591 1.2296 0.0005 5 6 4.2759 0.0258 0.0005 6 6 5.6576 -0.2832 0.0005 7 6 5.7788 -1.6365 -0.0001 8 6 7.0483 -2.3787 -0.0008 9 8 8.1052 -1.7762 -0.0004 10 7 7.0410 -3.7265 -0.0018 11 6 8.3057 -4.4659 -0.0020 12 6 8.0179 -5.9685 -0.0039 13 1 7.0897 -6.2683 -0.4904 14 6 8.4642 -6.7735 1.2182 15 1 8.9045 -6.2564 2.0708 16 6 7.7836 -8.1835 1.4070 17 7 8.6238 -9.1144 0.6182 18 6 9.0071 -10.3863 0.9501 19 1 8.9142 -10.7296 1.9699 20 6 9.5151 -11.2347 -0.0241 21 7 9.4574 -10.8890 -1.2928 22 14 10.2804 -12.8669 0.4652 23 1 9.2702 -13.6954 1.1711 24 1 10.7430 -13.5813 -0.7516 25 1 11.4358 -12.6218 1.3653 26 6 8.9551 -8.3569 -0.6111 27 6 9.2139 -6.9154 -0.1228 28 1 10.2125 -6.5040 -0.2691 29 7 4.5193 -2.2040 0.0002 30 1 4.3285 -3.1550 -0.0005 31 6 3.5809 -1.1994 -0.0047 32 6 2.1886 -1.1961 0.0005 33 1 -0.3633 0.0000 -1.0276 34 1 -0.3633 -0.8900 0.5138 35 1 -0.3634 0.8899 0.5138 36 1 1.6446 2.1364 -0.0004 37 1 4.0850 2.1729 0.0009 38 1 6.4695 0.4289 0.0009 39 1 6.1983 -4.2069 -0.0025 40 1 8.8790 -4.2050 -0.8915 41 1 8.8784 -4.2064 0.8884 42 1 6.7625 -8.1769 1.0256 43 1 7.7932 -8.4627 2.4606 44 1 9.8120 -11.4820 -1.9737 45 1 8.1170 -8.3775 -1.3077 46 1 9.8501 -8.7659 -1.0798 47 1 1.6449 -2.1293 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978535725.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:11 Heat of formation + Delta-G solvation = 76.672309 kcal Electronic energy + Delta-G solvation = -27305.796409 eV Core-core repulsion = 23455.353399 eV Total energy + Delta-G solvation = -3850.443011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.88757 -39.71220 -38.67381 -37.50397 -35.16637 -33.48609 -32.94670 -31.18316 -30.79430 -29.79039 -27.98550 -27.06747 -26.53051 -24.99223 -23.34941 -22.25415 -21.26937 -21.15057 -20.55612 -19.86109 -19.34096 -18.60863 -17.09312 -16.84787 -16.28865 -15.82571 -15.70529 -15.26436 -14.82693 -14.72783 -14.46364 -14.18238 -14.01725 -13.89109 -13.74049 -13.53801 -13.13241 -13.02998 -12.83959 -12.70871 -12.50694 -12.04237 -11.95084 -11.55139 -11.29573 -11.24382 -11.15326 -10.85734 -10.70268 -10.44607 -10.32564 -10.19112 -10.12845 -9.78633 -9.55582 -9.23852 -9.09853 -8.68337 -8.52255 -8.04817 -6.92609 -5.84842 -3.19349 0.44995 1.28449 1.81286 2.55992 2.87103 3.11449 3.35489 3.40429 3.41519 3.53700 4.07192 4.30613 4.41471 4.46626 4.52931 4.74147 4.79681 4.85418 5.01017 5.08089 5.21376 5.23950 5.27141 5.32445 5.35773 5.38963 5.42931 5.50820 5.63305 5.71090 5.71368 5.76389 5.81542 5.87194 6.08412 6.15369 6.16980 6.21441 6.32431 6.36375 6.46680 6.58466 6.61791 6.73748 6.83566 7.00918 7.25627 7.29801 7.47257 7.66575 7.89877 8.15621 9.05830 9.68749 10.45395 11.29465 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022309 B = 0.001751 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.795123 B =15986.091617 C =16868.707271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.056 4.056 3 C -0.149 4.149 4 C -0.056 4.056 5 C -0.125 4.125 6 C -0.106 4.106 7 C 0.018 3.982 8 C 0.581 3.419 9 O -0.524 6.524 10 N -0.720 5.720 11 C 0.154 3.846 12 C -0.156 4.156 13 H 0.102 0.898 14 C -0.172 4.172 15 H 0.108 0.892 16 C 0.156 3.844 17 N -0.594 5.594 18 C -0.230 4.230 19 H 0.076 0.924 20 C -0.005 4.005 21 N -0.915 5.915 22 Si 0.914 3.086 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.284 1.284 26 C 0.184 3.816 27 C -0.160 4.160 28 H 0.103 0.897 29 N -0.578 5.578 30 H 0.418 0.582 31 C 0.118 3.882 32 C -0.135 4.135 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.156 0.844 39 H 0.397 0.603 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.026 0.974 43 H 0.049 0.951 44 H 0.255 0.745 45 H 0.023 0.977 46 H 0.090 0.910 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.764 23.442 1.745 28.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.058 4.058 3 C -0.168 4.168 4 C -0.075 4.075 5 C -0.129 4.129 6 C -0.133 4.133 7 C -0.092 4.092 8 C 0.367 3.633 9 O -0.400 6.400 10 N -0.370 5.370 11 C 0.032 3.968 12 C -0.175 4.175 13 H 0.120 0.880 14 C -0.192 4.192 15 H 0.126 0.874 16 C 0.029 3.971 17 N -0.317 5.317 18 C -0.358 4.358 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.561 5.561 22 Si 0.743 3.257 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.210 1.210 26 C 0.058 3.942 27 C -0.181 4.181 28 H 0.121 0.879 29 N -0.183 5.183 30 H 0.257 0.743 31 C 0.008 3.992 32 C -0.156 4.156 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.174 0.826 39 H 0.231 0.769 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.043 0.957 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.041 0.959 46 H 0.108 0.892 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.806 23.399 1.648 27.739 hybrid contribution -0.065 -1.584 0.171 1.594 sum -14.871 21.816 1.819 26.465 Atomic orbital electron populations 1.20802 0.90859 1.02920 1.02479 1.19625 0.95863 0.92216 0.98048 1.20532 0.93931 0.97431 1.04883 1.20397 0.93663 0.96280 0.97173 1.18203 0.93030 0.92934 1.08762 1.20912 0.95445 0.93183 1.03761 1.20180 0.83961 0.93436 1.11583 1.17193 0.87176 0.81869 0.77092 1.90861 1.30664 1.68511 1.49934 1.45948 1.10471 1.05727 1.74902 1.20961 0.84448 0.88906 1.02519 1.22547 1.00609 0.90556 1.03796 0.88011 1.24735 1.04694 0.98396 0.91334 0.87430 1.21713 0.92656 0.86805 0.95913 1.45133 1.56062 1.11994 1.18485 1.18944 1.36592 0.86609 0.93610 0.90615 1.24902 1.01947 0.98270 0.95086 1.69890 1.49820 1.37562 0.98867 0.86182 0.79287 0.83016 0.77166 1.20974 1.21502 1.21021 1.21081 1.00554 0.83822 0.88756 1.24190 0.94740 0.98007 1.01136 0.87901 1.41946 1.04083 1.08170 1.64079 0.74342 1.18291 0.90773 0.87644 1.02507 1.19912 0.89699 0.98486 1.07490 0.90980 0.91490 0.91309 0.85875 0.85642 0.82647 0.76926 0.90703 0.91007 0.95663 0.93296 0.93455 0.95863 0.89194 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 9.99 36.01 0.36 -0.19 16 2 C -0.06 -0.41 5.88 -104.57 -0.61 -1.03 16 3 C -0.15 -1.10 9.61 -39.97 -0.38 -1.49 16 4 C -0.06 -0.48 10.06 -39.53 -0.40 -0.87 16 5 C -0.12 -1.28 6.16 -106.93 -0.66 -1.94 16 6 C -0.11 -1.17 10.53 -39.15 -0.41 -1.58 16 7 C 0.02 0.19 6.97 -82.29 -0.57 -0.38 16 8 C 0.58 7.40 7.80 -12.69 -0.10 7.30 16 9 O -0.52 -8.45 16.84 5.23 0.09 -8.36 16 10 N -0.72 -7.99 5.55 -61.50 -0.34 -8.33 16 11 C 0.15 1.99 5.95 -4.04 -0.02 1.96 16 12 C -0.16 -2.26 5.34 -90.62 -0.48 -2.75 16 13 H 0.10 1.45 8.04 -51.93 -0.42 1.04 16 14 C -0.17 -2.89 7.03 -87.38 -0.61 -3.50 16 15 H 0.11 1.67 8.12 -51.93 -0.42 1.25 16 16 C 0.16 3.14 7.10 -0.57 0.00 3.14 16 17 N -0.59 -14.89 3.38 -166.73 -0.56 -15.46 16 18 C -0.23 -6.31 10.35 -15.06 -0.16 -6.46 16 19 H 0.08 2.01 7.85 -52.49 -0.41 1.60 16 20 C 0.00 -0.13 5.39 -17.43 -0.09 -0.23 16 21 N -0.92 -26.45 10.88 55.49 0.60 -25.84 16 22 Si 0.91 21.68 29.56 -169.99 -5.03 16.66 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.18 4.29 5.70 -2.41 -0.01 4.28 16 27 C -0.16 -2.92 6.77 -89.22 -0.60 -3.52 16 28 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 29 N -0.58 -5.13 6.07 -7.35 -0.04 -5.18 16 30 H 0.42 2.60 8.12 -40.82 -0.33 2.27 16 31 C 0.12 1.14 7.25 -83.97 -0.61 0.53 16 32 C -0.14 -1.10 9.71 -39.42 -0.38 -1.49 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 35 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 36 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 39 H 0.40 3.42 7.46 -40.82 -0.30 3.12 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.97 7.94 -51.93 -0.41 0.55 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 2.37 6.53 -51.93 -0.34 2.03 16 47 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 390.80 15.07 5.89 5.89 Total: -1.00 -32.73 390.80 -12.00 -44.73 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.84 Total: 4.11 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -5.77 Total: -8.22 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.35 Total: -54.81 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.73 -12.00 -44.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978535725.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.407 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds