Wall clock time and date at job start Tue Mar 31 2020 22:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38943 * 119.67519 * 2 1 4 4 C 1.36439 * 120.61487 * 179.97438 * 3 2 1 5 5 C 1.40101 * 119.83210 * 0.02562 * 4 3 2 6 6 C 1.41588 * 133.37920 * 179.97438 * 5 4 3 7 7 C 1.35869 * 107.72539 * 180.02562 * 6 5 4 8 8 C 1.47057 * 125.43162 * 179.97438 * 7 6 5 9 9 O 1.21655 * 119.99840 * 0.02811 * 8 7 6 10 10 N 1.34773 * 120.00216 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00083 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47134 * 180.02562 * 11 10 8 13 13 H 1.09004 * 115.51873 * 29.58526 * 12 11 10 14 14 C 1.52999 * 117.44521 * 244.23843 * 12 11 10 15 15 H 1.09003 * 119.53555 * 4.12190 * 14 12 11 16 16 C 1.57695 * 116.11239 * 161.63702 * 14 12 11 17 17 N 1.48148 * 104.67336 * 87.30997 * 16 14 12 18 18 C 1.36931 * 127.83528 * 139.77127 * 17 16 14 19 19 H 1.08000 * 120.00405 * 344.34299 * 18 17 16 20 20 C 1.38810 * 119.99926 * 164.33818 * 18 17 16 21 21 N 1.31625 * 119.99781 * 350.57121 * 20 18 17 22 22 Si 1.86796 * 120.00434 * 170.57420 * 20 18 17 23 23 H 1.48504 * 109.47042 * 59.99735 * 22 20 18 24 24 H 1.48500 * 109.47357 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47094 * 300.00078 * 22 20 18 26 26 C 1.48145 * 104.32196 * 319.77648 * 17 16 14 27 27 C 1.52999 * 117.44419 * 174.99756 * 12 11 10 28 28 H 1.08995 * 119.54163 * 355.88507 * 27 12 11 29 29 N 1.38146 * 109.13855 * 359.97438 * 7 6 5 30 30 H 0.96997 * 125.60402 * 179.97438 * 29 7 6 31 31 C 1.37476 * 108.78861 * 0.24834 * 29 7 6 32 32 C 1.37671 * 119.67529 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47183 * 90.00201 * 1 2 3 34 34 H 1.08996 * 109.46911 * 209.99896 * 1 2 3 35 35 H 1.08997 * 109.47496 * 329.99740 * 1 2 3 36 36 H 1.07993 * 119.69146 * 359.97438 * 3 2 1 37 37 H 1.08006 * 120.08046 * 180.02562 * 4 3 2 38 38 H 1.07993 * 126.13688 * 0.02562 * 6 5 4 39 39 H 0.97005 * 119.99881 * 0.02562 * 10 8 7 40 40 H 1.08997 * 109.47467 * 300.00314 * 11 10 8 41 41 H 1.09001 * 109.47295 * 60.00103 * 11 10 8 42 42 H 1.09004 * 110.92011 * 328.23223 * 16 14 12 43 43 H 1.09005 * 109.93467 * 205.89320 * 16 14 12 44 44 H 0.97003 * 119.99532 * 180.02562 * 21 20 18 45 45 H 1.08996 * 110.40779 * 280.79860 * 26 17 16 46 46 H 1.08998 * 110.40149 * 158.37308 * 26 17 16 47 47 H 1.07996 * 120.09600 * 0.04233 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2072 0.0000 4 6 3.5591 1.2296 0.0005 5 6 4.2759 0.0258 0.0005 6 6 5.6576 -0.2832 0.0005 7 6 5.7788 -1.6365 -0.0001 8 6 7.0483 -2.3787 -0.0008 9 8 8.1052 -1.7762 -0.0004 10 7 7.0410 -3.7265 -0.0018 11 6 8.3057 -4.4659 -0.0020 12 6 8.0179 -5.9685 -0.0039 13 1 7.0897 -6.2683 -0.4904 14 6 8.4642 -6.7735 1.2182 15 1 8.9045 -6.2564 2.0708 16 6 7.7836 -8.1835 1.4070 17 7 8.6238 -9.1144 0.6182 18 6 9.0071 -10.3863 0.9501 19 1 8.9142 -10.7296 1.9699 20 6 9.5151 -11.2347 -0.0241 21 7 9.4574 -10.8890 -1.2928 22 14 10.2804 -12.8669 0.4652 23 1 9.2702 -13.6954 1.1711 24 1 10.7430 -13.5813 -0.7516 25 1 11.4358 -12.6218 1.3653 26 6 8.9551 -8.3569 -0.6111 27 6 9.2139 -6.9154 -0.1228 28 1 10.2125 -6.5040 -0.2691 29 7 4.5193 -2.2040 0.0002 30 1 4.3285 -3.1550 -0.0005 31 6 3.5809 -1.1994 -0.0047 32 6 2.1886 -1.1961 0.0005 33 1 -0.3633 0.0000 -1.0276 34 1 -0.3633 -0.8900 0.5138 35 1 -0.3634 0.8899 0.5138 36 1 1.6446 2.1364 -0.0004 37 1 4.0850 2.1729 0.0009 38 1 6.4695 0.4289 0.0009 39 1 6.1983 -4.2069 -0.0025 40 1 8.8790 -4.2050 -0.8915 41 1 8.8784 -4.2064 0.8884 42 1 6.7625 -8.1769 1.0256 43 1 7.7932 -8.4627 2.4606 44 1 9.8120 -11.4820 -1.9737 45 1 8.1170 -8.3775 -1.3077 46 1 9.8501 -8.7659 -1.0798 47 1 1.6449 -2.1293 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978535725.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:10 Heat of formation + Delta-G solvation = 57.627907 kcal Electronic energy + Delta-G solvation = -27306.622237 eV Core-core repulsion = 23455.353399 eV Total energy + Delta-G solvation = -3851.268838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.60773 -40.80349 -40.05198 -38.15303 -36.46808 -35.09748 -33.61023 -32.77897 -31.67960 -30.47008 -29.21648 -28.72348 -27.58172 -26.43421 -24.15224 -23.08632 -22.74687 -21.86762 -21.80852 -20.95994 -20.79717 -19.48180 -18.82200 -17.81377 -17.26836 -16.75243 -16.65798 -16.62830 -16.05964 -15.75668 -15.55826 -15.21977 -15.11832 -14.75775 -14.66603 -14.51970 -14.49598 -14.27651 -14.00037 -13.67127 -13.40055 -13.19211 -12.90098 -12.89893 -12.70320 -12.57877 -12.35632 -12.12795 -12.00562 -11.92484 -11.80790 -11.77698 -11.51367 -10.97410 -10.82675 -10.75089 -10.59985 -10.21168 -9.17869 -8.92428 -8.72319 -7.93622 -5.29654 -0.27162 0.65969 1.03449 1.45226 1.48355 1.54894 1.78244 1.98144 2.21684 2.46332 2.71725 2.90560 3.23841 3.56349 3.59738 3.69624 3.73872 3.83990 4.01459 4.13555 4.14738 4.22423 4.28883 4.31541 4.39516 4.48865 4.54332 4.61170 4.67110 4.73740 4.85185 4.90061 4.91405 4.95792 4.99401 5.03998 5.08347 5.29015 5.31399 5.34396 5.43379 5.47945 5.50967 5.55535 5.65042 5.66006 5.74843 6.11980 6.16416 6.29891 6.47694 6.95116 6.99479 7.66949 8.45015 9.19955 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022309 B = 0.001751 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.795123 B =15986.091617 C =16868.707271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.056 4.056 3 C -0.151 4.151 4 C -0.066 4.066 5 C -0.149 4.149 6 C -0.115 4.115 7 C 0.004 3.996 8 C 0.585 3.415 9 O -0.563 6.563 10 N -0.708 5.708 11 C 0.163 3.837 12 C -0.114 4.114 13 H 0.110 0.890 14 C -0.158 4.158 15 H 0.130 0.870 16 C 0.149 3.851 17 N -0.620 5.620 18 C -0.242 4.242 19 H 0.080 0.920 20 C -0.062 4.062 21 N -0.947 5.947 22 Si 0.979 3.021 23 H -0.274 1.274 24 H -0.294 1.294 25 H -0.278 1.278 26 C 0.189 3.811 27 C -0.177 4.177 28 H 0.112 0.888 29 N -0.568 5.568 30 H 0.430 0.570 31 C 0.109 3.891 32 C -0.147 4.147 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.155 0.845 39 H 0.411 0.589 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.032 0.968 43 H 0.054 0.946 44 H 0.250 0.750 45 H 0.003 0.997 46 H 0.051 0.949 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.755 24.810 2.813 30.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.057 4.057 3 C -0.170 4.170 4 C -0.085 4.085 5 C -0.153 4.153 6 C -0.142 4.142 7 C -0.106 4.106 8 C 0.372 3.628 9 O -0.442 6.442 10 N -0.359 5.359 11 C 0.040 3.960 12 C -0.133 4.133 13 H 0.128 0.872 14 C -0.178 4.178 15 H 0.147 0.853 16 C 0.024 3.976 17 N -0.344 5.344 18 C -0.371 4.371 19 H 0.098 0.902 20 C -0.256 4.256 21 N -0.594 5.594 22 Si 0.807 3.193 23 H -0.200 1.200 24 H -0.220 1.220 25 H -0.204 1.204 26 C 0.063 3.937 27 C -0.197 4.197 28 H 0.130 0.870 29 N -0.174 5.174 30 H 0.270 0.730 31 C -0.002 4.002 32 C -0.168 4.168 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.172 0.828 39 H 0.247 0.753 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.050 0.950 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.021 0.979 46 H 0.070 0.930 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.847 24.761 2.742 30.074 hybrid contribution 0.408 -1.917 -0.152 1.966 sum -16.439 22.844 2.590 28.263 Atomic orbital electron populations 1.20864 0.88913 1.03904 1.03287 1.20036 0.97350 0.91955 0.96398 1.20882 0.93710 0.98577 1.03783 1.20673 0.94336 0.96402 0.97093 1.18435 0.92813 0.94103 1.09998 1.21068 0.96097 0.93421 1.03638 1.19889 0.84042 0.93400 1.13219 1.17328 0.87208 0.81996 0.76237 1.90838 1.32114 1.69291 1.51912 1.45754 1.10596 1.05327 1.74262 1.20772 0.85140 0.87482 1.02651 1.22421 0.98925 0.90906 1.01085 0.87203 1.24661 1.03863 0.97297 0.91929 0.85250 1.21879 0.92515 0.87659 0.95581 1.45445 1.57291 1.12179 1.19509 1.19333 1.36017 0.87883 0.93876 0.90204 1.25735 1.02965 1.01796 0.95111 1.70086 1.51051 1.38568 0.99727 0.85147 0.78534 0.79022 0.76588 1.19981 1.21986 1.20389 1.20811 0.97920 0.86730 0.88206 1.23871 0.96859 0.96303 1.02663 0.86966 1.41834 1.03180 1.08730 1.63658 0.73007 1.18564 0.91476 0.87595 1.02552 1.20195 0.89153 0.99706 1.07716 0.90118 0.90792 0.90123 0.83549 0.84183 0.82770 0.75272 0.90834 0.90814 0.95042 0.92714 0.94115 0.97908 0.93039 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 9.99 71.24 0.71 -0.05 16 2 C -0.06 -0.69 5.88 -19.83 -0.12 -0.81 16 3 C -0.15 -1.89 9.61 22.02 0.21 -1.68 16 4 C -0.07 -1.03 10.06 22.30 0.22 -0.80 16 5 C -0.15 -2.95 6.16 -21.36 -0.13 -3.08 16 6 C -0.11 -2.51 10.53 22.55 0.24 -2.27 16 7 C 0.00 0.09 6.97 39.91 0.28 0.36 16 8 C 0.58 14.37 7.80 86.56 0.68 15.05 16 9 O -0.56 -17.99 16.84 -4.21 -0.07 -18.06 16 10 N -0.71 -14.37 5.55 -466.73 -2.59 -16.96 16 11 C 0.16 3.84 5.95 86.38 0.51 4.36 16 12 C -0.11 -3.08 5.34 -10.79 -0.06 -3.14 16 13 H 0.11 2.87 8.04 -2.38 -0.02 2.85 16 14 C -0.16 -4.99 7.03 -8.70 -0.06 -5.05 16 15 H 0.13 3.61 8.12 -2.39 -0.02 3.59 16 16 C 0.15 5.86 7.10 87.73 0.62 6.48 16 17 N -0.62 -31.49 3.38 -681.42 -2.30 -33.79 16 18 C -0.24 -13.48 10.35 84.03 0.87 -12.61 16 19 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 20 C -0.06 -3.51 5.39 84.86 0.46 -3.06 16 21 N -0.95 -56.54 10.88 21.65 0.24 -56.30 16 22 Si 0.98 45.19 29.56 68.60 2.03 47.22 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 C 0.19 9.08 5.70 86.53 0.49 9.57 16 27 C -0.18 -6.32 6.77 -9.89 -0.07 -6.39 16 28 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 29 N -0.57 -9.35 6.07 -177.18 -1.08 -10.43 16 30 H 0.43 4.58 8.12 -92.71 -0.75 3.82 16 31 C 0.11 1.97 7.25 39.14 0.28 2.25 16 32 C -0.15 -2.11 9.71 22.38 0.22 -1.89 16 33 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.07 0.42 8.08 -2.39 -0.02 0.40 16 35 H 0.08 0.37 8.08 -2.39 -0.02 0.35 16 36 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 37 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 39 H 0.41 6.07 7.46 -92.70 -0.69 5.38 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 1.80 7.94 -2.39 -0.02 1.78 16 42 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 45 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.05 2.84 6.53 -2.39 -0.02 2.83 16 47 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -72.69 390.80 1.15 -71.55 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -0.44 Total: 19.53 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 5.36 Total: -2.76 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -5.74 Total: -117.48 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.07 Total: -18.06 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -72.69 1.15 -71.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978535725.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.175 kcal (2) G-P(sol) polarization free energy of solvation -72.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds