Wall clock time and date at job start Tue Mar 31 2020 22:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35745 * 120.33144 * 2 1 4 4 C 1.40828 * 119.71632 * 180.02562 * 3 2 1 5 5 C 1.34534 * 120.58784 * 359.97438 * 4 3 2 6 6 N 1.37439 * 120.74118 * 0.03837 * 5 4 3 7 7 C 1.35133 * 131.28608 * 179.97438 * 6 5 4 8 8 C 1.38057 * 108.76658 * 180.02562 * 7 6 5 9 9 C 1.47506 * 126.36699 * 179.97438 * 8 7 6 10 10 O 1.21601 * 119.99685 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00210 * 0.03141 * 9 8 7 12 12 C 1.46495 * 119.99851 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46690 * 179.97438 * 12 11 9 14 14 H 1.08990 * 115.51837 * 330.41150 * 13 12 11 15 15 C 1.53005 * 117.43952 * 184.99918 * 13 12 11 16 16 H 1.08998 * 119.54101 * 4.11146 * 15 13 12 17 17 C 1.54390 * 118.11915 * 160.81200 * 15 13 12 18 18 N 1.48146 * 104.62111 * 87.19223 * 17 15 13 19 19 C 1.36937 * 127.83961 * 140.39311 * 18 17 15 20 20 H 1.08003 * 119.99660 * 195.59555 * 19 18 17 21 21 C 1.38810 * 119.99994 * 15.58999 * 19 18 17 22 22 N 1.31620 * 119.99862 * 9.10173 * 21 19 18 23 23 Si 1.86797 * 119.99935 * 189.09597 * 21 19 18 24 24 H 1.48499 * 109.47144 * 90.00302 * 23 21 19 25 25 H 1.48496 * 109.47335 * 210.00524 * 23 21 19 26 26 H 1.48506 * 109.47004 * 330.00050 * 23 21 19 27 27 C 1.48148 * 104.31780 * 320.41002 * 18 17 15 28 28 C 1.53000 * 117.44368 * 115.76091 * 13 12 11 29 29 H 1.09010 * 119.53855 * 355.87528 * 28 13 12 30 30 C 1.41193 * 107.26241 * 0.26532 * 8 7 6 31 31 C 1.37949 * 119.80892 * 359.97438 * 6 5 4 32 32 H 1.08997 * 109.46950 * 90.00607 * 1 2 3 33 33 H 1.08999 * 109.47090 * 210.00349 * 1 2 3 34 34 H 1.08997 * 109.47244 * 330.00521 * 1 2 3 35 35 H 1.07992 * 120.14048 * 359.97438 * 3 2 1 36 36 H 1.07997 * 119.70605 * 179.97438 * 4 3 2 37 37 H 1.08002 * 119.63218 * 180.02562 * 5 4 3 38 38 H 1.07997 * 125.61177 * 0.02562 * 7 6 5 39 39 H 0.96996 * 119.99771 * 359.97438 * 11 9 8 40 40 H 1.08995 * 109.47388 * 59.99662 * 12 11 9 41 41 H 1.08999 * 109.47208 * 299.99344 * 12 11 9 42 42 H 1.09001 * 110.40401 * 205.97253 * 17 15 13 43 43 H 1.08997 * 110.40762 * 328.39652 * 17 15 13 44 44 H 0.96999 * 119.99692 * 180.02562 * 22 21 19 45 45 H 1.09000 * 110.41069 * 280.80205 * 27 18 17 46 46 H 1.09007 * 110.50213 * 158.42533 * 27 18 17 47 47 H 1.07998 * 126.57264 * 179.74404 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6007 1.1565 -0.0005 5 6 4.2728 -0.0089 -0.0006 6 7 3.6005 -1.2076 -0.0008 7 6 4.0500 -2.4820 -0.0013 8 6 2.9650 -3.3357 -0.0020 9 6 3.0120 -4.8100 -0.0032 10 8 1.9788 -5.4512 -0.0042 11 7 4.2001 -5.4463 -0.0032 12 6 4.2467 -6.9105 -0.0038 13 6 5.7048 -7.3743 -0.0043 14 1 6.4114 -6.7013 -0.4897 15 6 5.9667 -8.8770 -0.1233 16 1 5.1289 -9.5585 -0.2707 17 6 7.3695 -9.3377 -0.5742 18 7 8.1578 -9.4159 0.6777 19 6 9.0809 -10.3635 1.0314 20 1 9.3982 -10.4507 2.0600 21 6 9.6086 -11.2120 0.0678 22 7 9.3626 -10.9943 -1.2067 23 14 10.6679 -12.6628 0.5801 24 1 9.8062 -13.8522 0.7989 25 1 11.6553 -12.9568 -0.4894 26 1 11.3847 -12.3326 1.8381 27 6 7.7204 -8.2365 1.4603 28 6 6.1981 -8.1509 1.2182 29 1 5.5326 -8.2915 2.0701 30 6 1.8020 -2.5351 -0.0081 31 6 2.2211 -1.2202 -0.0005 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5137 35 1 1.6603 2.1113 -0.0004 36 1 4.1459 2.0888 -0.0010 37 1 5.3528 -0.0025 -0.0006 38 1 5.0871 -2.7830 -0.0012 39 1 5.0242 -4.9348 -0.0027 40 1 3.7449 -7.2897 -0.8940 41 1 3.7445 -7.2905 0.8859 42 1 7.3134 -10.3169 -1.0497 43 1 7.8085 -8.6084 -1.2550 44 1 9.7310 -11.5874 -1.8800 45 1 8.2142 -7.3351 1.0974 46 1 7.9292 -8.3828 2.5202 47 1 0.7801 -2.8846 -0.0140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978938710.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:41 Heat of formation + Delta-G solvation = 94.626726 kcal Electronic energy + Delta-G solvation = -27448.244199 eV Core-core repulsion = 23598.579750 eV Total energy + Delta-G solvation = -3849.664449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.56754 -39.59152 -38.64747 -36.96788 -34.93541 -34.45233 -33.31882 -31.11878 -30.57268 -28.97729 -27.38202 -27.21981 -27.08312 -25.07850 -23.45661 -22.34702 -21.76622 -21.10655 -20.40213 -19.51040 -19.21635 -18.09613 -17.20709 -16.81345 -16.44456 -15.92063 -15.70611 -15.54386 -15.02223 -14.79303 -14.55192 -14.30036 -13.90602 -13.75495 -13.66514 -13.38770 -13.15027 -13.04689 -12.74102 -12.64791 -12.47821 -12.09230 -11.88936 -11.82553 -11.49106 -11.25374 -11.09234 -10.84399 -10.63844 -10.48206 -10.30312 -10.12919 -10.07738 -9.74216 -9.38698 -9.12118 -8.99228 -8.77063 -8.62928 -7.69738 -6.87117 -5.80185 -3.14534 0.37678 0.98801 1.89625 2.30647 3.08028 3.19377 3.38206 3.43393 3.45163 3.46608 4.06792 4.16089 4.28558 4.40142 4.46209 4.54427 4.59597 4.77852 4.92358 5.03608 5.08540 5.17671 5.19669 5.31935 5.40142 5.42876 5.47374 5.53402 5.56190 5.59665 5.73064 5.82020 5.92022 5.94841 5.96799 5.98483 6.03772 6.24015 6.37160 6.43335 6.50570 6.57804 6.66892 6.72302 6.88341 6.92662 7.36020 7.53200 7.55186 7.71744 8.20837 8.26271 9.10768 9.73513 10.50661 11.34112 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027501 B = 0.001741 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.903277 B =16082.087313 C =16728.862355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.038 4.038 3 C -0.144 4.144 4 C -0.128 4.128 5 C 0.032 3.968 6 N -0.336 5.336 7 C -0.009 4.009 8 C -0.166 4.166 9 C 0.585 3.415 10 O -0.542 6.542 11 N -0.720 5.720 12 C 0.156 3.844 13 C -0.149 4.149 14 H 0.102 0.898 15 C -0.161 4.161 16 H 0.104 0.896 17 C 0.184 3.816 18 N -0.594 5.594 19 C -0.227 4.227 20 H 0.076 0.924 21 C -0.006 4.006 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.154 3.846 28 C -0.172 4.172 29 H 0.103 0.897 30 C -0.132 4.132 31 C 0.026 3.974 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.133 0.867 36 H 0.146 0.854 37 H 0.162 0.838 38 H 0.178 0.822 39 H 0.399 0.601 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.023 0.977 44 H 0.254 0.746 45 H 0.023 0.977 46 H 0.049 0.951 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.413 26.583 1.472 30.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.039 4.039 3 C -0.164 4.164 4 C -0.148 4.148 5 C -0.086 4.086 6 N 0.001 4.999 7 C -0.143 4.143 8 C -0.174 4.174 9 C 0.372 3.628 10 O -0.420 6.420 11 N -0.371 5.371 12 C 0.032 3.968 13 C -0.168 4.168 14 H 0.120 0.880 15 C -0.182 4.182 16 H 0.122 0.878 17 C 0.058 3.942 18 N -0.318 5.318 19 C -0.355 4.355 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.562 5.562 23 Si 0.743 3.257 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.028 3.972 28 C -0.192 4.192 29 H 0.121 0.879 30 C -0.157 4.157 31 C -0.078 4.078 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.151 0.849 36 H 0.163 0.837 37 H 0.180 0.820 38 H 0.195 0.805 39 H 0.234 0.766 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.041 0.959 44 H 0.064 0.936 45 H 0.041 0.959 46 H 0.068 0.932 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.738 26.037 1.392 29.951 hybrid contribution 1.152 -0.426 0.208 1.246 sum -13.585 25.611 1.600 29.035 Atomic orbital electron populations 1.20749 0.89554 1.03527 1.03036 1.19389 0.96528 0.90095 0.97880 1.20821 0.93693 0.97899 1.04029 1.20708 0.94821 0.97102 1.02208 1.21678 0.98481 0.83127 1.05297 1.41257 1.07202 1.05362 1.46081 1.22160 0.99541 0.80593 1.11973 1.19657 0.93365 0.92668 1.11673 1.17402 0.83548 0.85773 0.76103 1.90777 1.33349 1.67508 1.50334 1.45875 1.08042 1.07892 1.75279 1.20878 0.95182 0.78469 1.02229 1.22524 0.95076 0.96068 1.03167 0.87998 1.24237 1.01696 0.91188 1.01070 0.87842 1.21064 0.83694 1.00872 0.88567 1.45207 1.45155 1.24635 1.16797 1.19005 1.15095 1.08234 0.93183 0.90581 1.24898 0.99741 1.00521 0.95152 1.69899 1.48738 1.38596 0.98955 0.86107 0.79672 0.82523 0.77380 1.21478 1.21663 1.20560 1.21131 0.89303 0.90814 0.95956 1.24000 0.98815 1.04920 0.91446 0.87896 1.21071 0.98780 0.88758 1.07055 1.18642 0.81786 0.94969 1.12442 0.90382 0.90706 0.90851 0.84923 0.83663 0.82019 0.80523 0.76639 0.91003 0.91321 0.89179 0.95887 0.93556 0.95925 0.93225 0.82782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 9.91 36.00 0.36 -0.27 16 2 C -0.04 -0.30 5.90 -104.32 -0.62 -0.92 16 3 C -0.14 -0.92 9.72 -39.50 -0.38 -1.31 16 4 C -0.13 -0.73 9.97 -39.91 -0.40 -1.13 16 5 C 0.03 0.21 10.89 -16.35 -0.18 0.03 16 6 N -0.34 -3.12 2.92 -60.42 -0.18 -3.29 16 7 C -0.01 -0.08 11.09 -16.16 -0.18 -0.26 16 8 C -0.17 -1.98 6.12 -105.07 -0.64 -2.63 16 9 C 0.58 8.22 7.82 -12.48 -0.10 8.12 16 10 O -0.54 -9.59 16.92 5.28 0.09 -9.50 16 11 N -0.72 -8.81 5.54 -61.36 -0.34 -9.15 16 12 C 0.16 2.16 5.95 -4.04 -0.02 2.13 16 13 C -0.15 -2.28 5.39 -90.61 -0.49 -2.76 16 14 H 0.10 1.52 8.04 -51.93 -0.42 1.11 16 15 C -0.16 -3.04 6.85 -89.22 -0.61 -3.65 16 16 H 0.10 1.86 8.14 -51.93 -0.42 1.43 16 17 C 0.18 4.38 5.70 -2.41 -0.01 4.37 16 18 N -0.59 -15.18 3.38 -168.86 -0.57 -15.75 16 19 C -0.23 -6.32 10.35 -15.06 -0.16 -6.47 16 20 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 21 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 22 N -0.92 -26.75 10.86 55.49 0.60 -26.15 16 23 Si 0.91 21.92 29.56 -169.99 -5.03 16.90 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.15 3.19 7.04 -2.41 -0.02 3.17 16 28 C -0.17 -3.02 6.74 -89.22 -0.60 -3.62 16 29 H 0.10 1.69 8.12 -51.92 -0.42 1.26 16 30 C -0.13 -1.53 10.27 -38.55 -0.40 -1.93 16 31 C 0.03 0.26 6.60 -84.00 -0.55 -0.29 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.44 7.71 -51.93 -0.40 0.04 16 34 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 35 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.15 0.40 8.06 -52.49 -0.42 -0.02 16 37 H 0.16 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.18 1.10 7.42 -52.49 -0.39 0.72 16 39 H 0.40 3.85 7.30 -40.82 -0.30 3.55 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 42 H 0.09 2.41 6.51 -51.93 -0.34 2.08 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 47 H 0.15 1.68 7.94 -52.49 -0.42 1.27 16 LS Contribution 390.46 15.07 5.88 5.88 Total: -1.00 -34.48 390.46 -11.50 -45.98 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.87 Total: 2.75 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -5.10 Total: -7.66 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.48 Total: -54.34 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.48 -11.50 -45.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978938710.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.602 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds