Wall clock time and date at job start Tue Mar 31 2020 22:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35745 * 120.33144 * 2 1 4 4 C 1.40828 * 119.71632 * 180.02562 * 3 2 1 5 5 C 1.34534 * 120.58784 * 359.97438 * 4 3 2 6 6 N 1.37439 * 120.74118 * 0.03837 * 5 4 3 7 7 C 1.35133 * 131.28608 * 179.97438 * 6 5 4 8 8 C 1.38057 * 108.76658 * 180.02562 * 7 6 5 9 9 C 1.47506 * 126.36699 * 179.97438 * 8 7 6 10 10 O 1.21601 * 119.99685 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00210 * 0.03141 * 9 8 7 12 12 C 1.46495 * 119.99851 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46690 * 179.97438 * 12 11 9 14 14 H 1.08990 * 115.51837 * 330.41150 * 13 12 11 15 15 C 1.53005 * 117.43952 * 184.99918 * 13 12 11 16 16 H 1.08998 * 119.54101 * 4.11146 * 15 13 12 17 17 C 1.54390 * 118.11915 * 160.81200 * 15 13 12 18 18 N 1.48146 * 104.62111 * 87.19223 * 17 15 13 19 19 C 1.36937 * 127.83961 * 140.39311 * 18 17 15 20 20 H 1.08003 * 119.99660 * 195.59555 * 19 18 17 21 21 C 1.38810 * 119.99994 * 15.58999 * 19 18 17 22 22 N 1.31620 * 119.99862 * 9.10173 * 21 19 18 23 23 Si 1.86797 * 119.99935 * 189.09597 * 21 19 18 24 24 H 1.48499 * 109.47144 * 90.00302 * 23 21 19 25 25 H 1.48496 * 109.47335 * 210.00524 * 23 21 19 26 26 H 1.48506 * 109.47004 * 330.00050 * 23 21 19 27 27 C 1.48148 * 104.31780 * 320.41002 * 18 17 15 28 28 C 1.53000 * 117.44368 * 115.76091 * 13 12 11 29 29 H 1.09010 * 119.53855 * 355.87528 * 28 13 12 30 30 C 1.41193 * 107.26241 * 0.26532 * 8 7 6 31 31 C 1.37949 * 119.80892 * 359.97438 * 6 5 4 32 32 H 1.08997 * 109.46950 * 90.00607 * 1 2 3 33 33 H 1.08999 * 109.47090 * 210.00349 * 1 2 3 34 34 H 1.08997 * 109.47244 * 330.00521 * 1 2 3 35 35 H 1.07992 * 120.14048 * 359.97438 * 3 2 1 36 36 H 1.07997 * 119.70605 * 179.97438 * 4 3 2 37 37 H 1.08002 * 119.63218 * 180.02562 * 5 4 3 38 38 H 1.07997 * 125.61177 * 0.02562 * 7 6 5 39 39 H 0.96996 * 119.99771 * 359.97438 * 11 9 8 40 40 H 1.08995 * 109.47388 * 59.99662 * 12 11 9 41 41 H 1.08999 * 109.47208 * 299.99344 * 12 11 9 42 42 H 1.09001 * 110.40401 * 205.97253 * 17 15 13 43 43 H 1.08997 * 110.40762 * 328.39652 * 17 15 13 44 44 H 0.96999 * 119.99692 * 180.02562 * 22 21 19 45 45 H 1.09000 * 110.41069 * 280.80205 * 27 18 17 46 46 H 1.09007 * 110.50213 * 158.42533 * 27 18 17 47 47 H 1.07998 * 126.57264 * 179.74404 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6007 1.1565 -0.0005 5 6 4.2728 -0.0089 -0.0006 6 7 3.6005 -1.2076 -0.0008 7 6 4.0500 -2.4820 -0.0013 8 6 2.9650 -3.3357 -0.0020 9 6 3.0120 -4.8100 -0.0032 10 8 1.9788 -5.4512 -0.0042 11 7 4.2001 -5.4463 -0.0032 12 6 4.2467 -6.9105 -0.0038 13 6 5.7048 -7.3743 -0.0043 14 1 6.4114 -6.7013 -0.4897 15 6 5.9667 -8.8770 -0.1233 16 1 5.1289 -9.5585 -0.2707 17 6 7.3695 -9.3377 -0.5742 18 7 8.1578 -9.4159 0.6777 19 6 9.0809 -10.3635 1.0314 20 1 9.3982 -10.4507 2.0600 21 6 9.6086 -11.2120 0.0678 22 7 9.3626 -10.9943 -1.2067 23 14 10.6679 -12.6628 0.5801 24 1 9.8062 -13.8522 0.7989 25 1 11.6553 -12.9568 -0.4894 26 1 11.3847 -12.3326 1.8381 27 6 7.7204 -8.2365 1.4603 28 6 6.1981 -8.1509 1.2182 29 1 5.5326 -8.2915 2.0701 30 6 1.8020 -2.5351 -0.0081 31 6 2.2211 -1.2202 -0.0005 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5137 35 1 1.6603 2.1113 -0.0004 36 1 4.1459 2.0888 -0.0010 37 1 5.3528 -0.0025 -0.0006 38 1 5.0871 -2.7830 -0.0012 39 1 5.0242 -4.9348 -0.0027 40 1 3.7449 -7.2897 -0.8940 41 1 3.7445 -7.2905 0.8859 42 1 7.3134 -10.3169 -1.0497 43 1 7.8085 -8.6084 -1.2550 44 1 9.7310 -11.5874 -1.8800 45 1 8.2142 -7.3351 1.0974 46 1 7.9292 -8.3828 2.5202 47 1 0.7801 -2.8846 -0.0140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978938710.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:41 Heat of formation + Delta-G solvation = 75.136513 kcal Electronic energy + Delta-G solvation = -27449.089358 eV Core-core repulsion = 23598.579750 eV Total energy + Delta-G solvation = -3850.509608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.22154 -40.81920 -40.05564 -37.57011 -36.33572 -35.02679 -34.98200 -32.77376 -31.45832 -29.75097 -28.89533 -28.62293 -27.78407 -26.70563 -24.40489 -22.99489 -22.80660 -22.38295 -21.72908 -20.85814 -20.55785 -18.86922 -18.75116 -17.95764 -17.25865 -16.79089 -16.68072 -16.60840 -16.22598 -16.05048 -15.84555 -15.26247 -15.09207 -14.87678 -14.61751 -14.46038 -14.24441 -14.14329 -14.05526 -13.68204 -13.35026 -13.19831 -13.12284 -12.87923 -12.73118 -12.57035 -12.34295 -12.29405 -12.04685 -11.97093 -11.92798 -11.76156 -11.26985 -11.09801 -10.91546 -10.69115 -10.55200 -10.10224 -9.53211 -8.90074 -8.30753 -7.91429 -5.27553 -0.19641 0.37476 1.07706 1.46331 1.48508 1.57009 1.69496 2.14772 2.47028 2.48120 2.55596 2.75909 3.26619 3.51153 3.63155 3.70996 3.75645 3.85721 3.87496 4.02000 4.10346 4.17063 4.21887 4.28643 4.39265 4.44465 4.49088 4.58115 4.66924 4.73844 4.78265 4.80074 4.84832 4.94591 4.95862 5.03476 5.14485 5.21393 5.25309 5.34811 5.36045 5.45289 5.46917 5.47949 5.54334 5.66795 5.67434 5.88878 6.18717 6.30181 6.58365 7.01676 7.23809 7.68971 8.47289 9.22279 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027501 B = 0.001741 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.903277 B =16082.087313 C =16728.862355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.067 4.067 3 C -0.134 4.134 4 C -0.126 4.126 5 C 0.017 3.983 6 N -0.340 5.340 7 C 0.000 4.000 8 C -0.194 4.194 9 C 0.586 3.414 10 O -0.588 6.588 11 N -0.707 5.707 12 C 0.164 3.836 13 C -0.107 4.107 14 H 0.113 0.887 15 C -0.177 4.177 16 H 0.112 0.888 17 C 0.189 3.811 18 N -0.621 5.621 19 C -0.240 4.240 20 H 0.081 0.919 21 C -0.063 4.063 22 N -0.947 5.947 23 Si 0.980 3.020 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.267 1.267 27 C 0.149 3.851 28 C -0.161 4.161 29 H 0.122 0.878 30 C -0.166 4.166 31 C 0.020 3.980 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.159 0.841 36 H 0.181 0.819 37 H 0.194 0.806 38 H 0.209 0.791 39 H 0.414 0.586 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.004 0.996 44 H 0.249 0.751 45 H 0.030 0.970 46 H 0.056 0.944 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.872 29.664 2.508 32.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.068 4.068 3 C -0.154 4.154 4 C -0.146 4.146 5 C -0.099 4.099 6 N -0.003 5.003 7 C -0.134 4.134 8 C -0.202 4.202 9 C 0.375 3.625 10 O -0.469 6.469 11 N -0.359 5.359 12 C 0.040 3.960 13 C -0.126 4.126 14 H 0.130 0.870 15 C -0.198 4.198 16 H 0.130 0.870 17 C 0.064 3.936 18 N -0.345 5.345 19 C -0.369 4.369 20 H 0.098 0.902 21 C -0.257 4.257 22 N -0.595 5.595 23 Si 0.807 3.193 24 H -0.214 1.214 25 H -0.220 1.220 26 H -0.191 1.191 27 C 0.024 3.976 28 C -0.180 4.180 29 H 0.140 0.860 30 C -0.190 4.190 31 C -0.085 4.085 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.177 0.823 36 H 0.198 0.802 37 H 0.211 0.789 38 H 0.226 0.774 39 H 0.251 0.749 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.022 0.978 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.074 0.926 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.178 29.166 2.453 32.522 hybrid contribution 0.992 -1.172 -0.108 1.539 sum -13.186 27.994 2.346 31.033 Atomic orbital electron populations 1.20766 0.88551 1.03941 1.03394 1.19690 0.97584 0.89931 0.99600 1.21283 0.94449 0.98297 1.01392 1.21230 0.94723 0.98235 1.00380 1.22371 1.00124 0.82327 1.05120 1.41492 1.07027 1.06188 1.45551 1.22500 1.00120 0.80358 1.10398 1.19522 0.94675 0.91631 1.14364 1.17705 0.83111 0.86642 0.75062 1.90744 1.34914 1.68607 1.52676 1.45680 1.08396 1.07191 1.74615 1.20681 0.93724 0.79485 1.02092 1.22391 0.96001 0.93669 1.00530 0.86956 1.23930 0.99249 0.93987 1.02592 0.87030 1.20793 0.86361 0.98468 0.87991 1.45527 1.45268 1.25919 1.17788 1.19386 1.15221 1.08830 0.93470 0.90177 1.25735 1.01538 1.03226 0.95203 1.70092 1.50026 1.39510 0.99866 0.85067 0.77871 0.79069 0.77250 1.21372 1.22019 1.19123 1.21289 0.91210 0.89330 0.95734 1.23934 0.97077 1.05060 0.91954 0.85969 1.21093 0.98568 0.89935 1.09406 1.18887 0.82718 0.95129 1.11775 0.90047 0.91795 0.88927 0.82313 0.80219 0.78920 0.77402 0.74851 0.91359 0.91467 0.92989 0.97800 0.94144 0.95204 0.92558 0.83896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.91 71.24 0.71 -0.45 16 2 C -0.07 -0.98 5.90 -19.67 -0.12 -1.10 16 3 C -0.13 -1.29 9.72 22.33 0.22 -1.08 16 4 C -0.13 -0.93 9.97 22.06 0.22 -0.71 16 5 C 0.02 0.17 10.89 82.97 0.90 1.07 16 6 N -0.34 -5.65 2.92 -345.06 -1.01 -6.65 16 7 C 0.00 0.01 11.09 84.14 0.93 0.94 16 8 C -0.19 -4.65 6.12 -20.15 -0.12 -4.77 16 9 C 0.59 16.47 7.82 86.69 0.68 17.15 16 10 O -0.59 -21.47 16.92 -4.03 -0.07 -21.54 16 11 N -0.71 -16.25 5.54 -466.30 -2.59 -18.83 16 12 C 0.16 4.29 5.95 86.38 0.51 4.80 16 13 C -0.11 -3.05 5.39 -10.79 -0.06 -3.11 16 14 H 0.11 3.06 8.04 -2.39 -0.02 3.04 16 15 C -0.18 -6.59 6.85 -9.88 -0.07 -6.65 16 16 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 17 C 0.19 9.28 5.70 86.53 0.49 9.77 16 18 N -0.62 -31.99 3.38 -688.15 -2.33 -34.31 16 19 C -0.24 -13.50 10.35 84.03 0.87 -12.63 16 20 H 0.08 4.30 7.85 -2.91 -0.02 4.28 16 21 C -0.06 -3.61 5.40 84.86 0.46 -3.15 16 22 N -0.95 -57.06 10.86 21.65 0.24 -56.82 16 23 Si 0.98 45.62 29.56 68.60 2.03 47.65 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 27 C 0.15 6.01 7.04 86.53 0.61 6.62 16 28 C -0.16 -5.33 6.74 -9.89 -0.07 -5.40 16 29 H 0.12 3.66 8.12 -2.38 -0.02 3.64 16 30 C -0.17 -4.02 10.27 22.94 0.24 -3.79 16 31 C 0.02 0.40 6.60 38.90 0.26 0.66 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.79 7.71 -2.39 -0.02 0.78 16 34 H 0.09 0.57 8.08 -2.39 -0.02 0.55 16 35 H 0.16 0.65 8.06 -2.91 -0.02 0.62 16 36 H 0.18 0.05 8.06 -2.91 -0.02 0.03 16 37 H 0.19 0.55 8.06 -2.91 -0.02 0.53 16 38 H 0.21 1.92 7.42 -2.91 -0.02 1.90 16 39 H 0.41 6.92 7.30 -92.71 -0.68 6.24 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.07 1.85 7.94 -2.39 -0.02 1.83 16 42 H 0.05 2.91 6.51 -2.39 -0.02 2.90 16 43 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 45 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 47 H 0.14 3.53 7.94 -2.91 -0.02 3.50 16 Total: -1.00 -78.38 390.46 3.25 -75.13 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.31 Total: 17.21 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 6.66 Total: -1.83 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -5.68 Total: -116.62 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.07 Total: -21.54 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -78.38 3.25 -75.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978938710.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.267 kcal (2) G-P(sol) polarization free energy of solvation -78.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds