Wall clock time and date at job start Tue Mar 31 2020 22:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38763 * 119.84817 * 2 1 4 4 C 1.37759 * 120.63159 * 180.02562 * 3 2 1 5 5 C 1.39125 * 119.93442 * 359.96955 * 4 3 2 6 6 N 1.37962 * 133.19167 * 180.02562 * 5 4 3 7 7 H 0.97001 * 124.78161 * 0.03471 * 6 5 4 8 8 C 1.35470 * 110.42742 * 180.02562 * 6 5 4 9 9 C 1.36374 * 109.76957 * 0.02562 * 8 6 5 10 10 C 1.46913 * 126.77118 * 180.02562 * 9 8 6 11 11 O 1.21670 * 120.00206 * 180.02562 * 10 9 8 12 12 N 1.34775 * 119.99676 * 0.02562 * 10 9 8 13 13 C 1.46504 * 119.99969 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46970 * 180.02562 * 13 12 10 15 15 H 1.08989 * 115.52066 * 330.42023 * 14 13 12 16 16 C 1.52999 * 117.43875 * 185.00043 * 14 13 12 17 17 H 1.09003 * 119.54388 * 4.12094 * 16 14 13 18 18 C 1.54394 * 118.12318 * 160.81182 * 16 14 13 19 19 N 1.48150 * 104.61758 * 87.18847 * 18 16 14 20 20 C 1.36931 * 127.83803 * 140.39285 * 19 18 16 21 21 H 1.08001 * 120.00124 * 195.59473 * 20 19 18 22 22 C 1.38814 * 119.99750 * 15.60247 * 20 19 18 23 23 N 1.31616 * 120.00298 * 9.09475 * 22 20 19 24 24 Si 1.86805 * 119.99979 * 189.09476 * 22 20 19 25 25 H 1.48499 * 109.47206 * 59.99568 * 24 22 20 26 26 H 1.48500 * 109.47171 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46918 * 299.99947 * 24 22 20 28 28 C 1.48147 * 104.32421 * 320.42061 * 19 18 16 29 29 C 1.53000 * 117.43745 * 115.76324 * 14 13 12 30 30 H 1.08997 * 119.54711 * 355.87755 * 29 14 13 31 31 C 1.40396 * 119.35635 * 0.31139 * 5 4 3 32 32 C 1.37752 * 119.85039 * 179.97438 * 2 1 3 33 33 H 1.09007 * 109.46934 * 89.99771 * 1 2 3 34 34 H 1.08997 * 109.47309 * 210.00068 * 1 2 3 35 35 H 1.09000 * 109.47018 * 330.00629 * 1 2 3 36 36 H 1.07993 * 119.68142 * 359.97438 * 3 2 1 37 37 H 1.08003 * 120.03632 * 179.97438 * 4 3 2 38 38 H 1.07997 * 125.11641 * 179.97438 * 8 6 5 39 39 H 0.97005 * 120.00426 * 0.02562 * 12 10 9 40 40 H 1.09004 * 109.47039 * 60.00731 * 13 12 10 41 41 H 1.08997 * 109.47173 * 300.00517 * 13 12 10 42 42 H 1.08989 * 110.40978 * 205.97524 * 18 16 14 43 43 H 1.09004 * 110.39975 * 328.41079 * 18 16 14 44 44 H 0.97000 * 120.00355 * 180.02562 * 23 22 20 45 45 H 1.09002 * 110.40587 * 280.79723 * 28 19 18 46 46 H 1.09002 * 110.50568 * 158.42081 * 28 19 18 47 47 H 1.08000 * 120.16028 * 0.02562 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.2036 0.0000 4 6 3.5751 1.2224 -0.0005 5 6 4.2857 0.0263 -0.0004 6 7 5.6328 -0.2716 -0.0004 7 1 6.3451 0.3867 0.0000 8 6 5.8202 -1.6133 -0.0009 9 6 4.6130 -2.2477 -0.0018 10 6 4.3820 -3.6986 -0.0020 11 8 3.2458 -4.1337 -0.0033 12 7 5.4287 -4.5476 -0.0007 13 6 5.1984 -5.9944 -0.0003 14 6 6.5428 -6.7248 0.0018 15 1 7.3644 -6.1976 -0.4828 16 6 6.5167 -8.2500 -0.1159 17 1 5.5656 -8.7614 -0.2644 18 6 7.8082 -8.9676 -0.5643 19 7 8.5657 -9.1918 0.6890 20 6 9.2929 -10.2962 1.0448 21 1 9.5866 -10.4407 2.0740 22 6 9.6526 -11.2298 0.0826 23 7 9.4541 -10.9708 -1.1924 24 14 10.4185 -12.8540 0.5975 25 1 9.4745 -13.5899 1.4763 26 1 10.7084 -13.6692 -0.6095 27 1 11.6810 -12.5941 1.3349 28 6 8.3574 -7.9504 1.4703 29 6 6.8789 -7.5794 1.2256 30 1 6.1977 -7.5912 2.0764 31 6 3.5853 -1.1904 -0.0064 32 6 2.1926 -1.1948 0.0005 33 1 -0.3633 0.0000 -1.0277 34 1 -0.3634 -0.8899 0.5138 35 1 -0.3633 0.8900 0.5137 36 1 1.6500 2.1343 -0.0004 37 1 4.1028 2.1647 -0.0009 38 1 6.7811 -2.1063 -0.0013 39 1 6.3347 -4.2007 0.0007 40 1 4.6348 -6.2728 -0.8908 41 1 4.6330 -6.2721 0.8892 42 1 7.5691 -9.9189 -1.0392 43 1 8.3779 -8.3345 -1.2446 44 1 9.7051 -11.6234 -1.8648 45 1 9.0130 -7.1587 1.1076 46 1 8.5332 -8.1325 2.5305 47 1 1.6528 -2.1302 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979087233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:00 Heat of formation + Delta-G solvation = 74.903078 kcal Electronic energy + Delta-G solvation = -27487.613566 eV Core-core repulsion = 23637.093836 eV Total energy + Delta-G solvation = -3850.519730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.72091 -39.42394 -38.54674 -37.65930 -34.87751 -33.33524 -32.43583 -31.67741 -30.88003 -29.43478 -27.22591 -27.06724 -26.68489 -24.94471 -22.99198 -22.82613 -21.36325 -21.07374 -20.34363 -19.38564 -19.17703 -18.45372 -16.84389 -16.70218 -16.41543 -15.78723 -15.39391 -15.21375 -14.78447 -14.66468 -14.55592 -14.24763 -13.98014 -13.73216 -13.61073 -13.37838 -13.06963 -12.92616 -12.72457 -12.61430 -12.38442 -11.84891 -11.82354 -11.51665 -11.25323 -11.20452 -11.10184 -10.81934 -10.64626 -10.29914 -10.16194 -9.97742 -9.96879 -9.73800 -9.37381 -9.10969 -8.89644 -8.63519 -8.47487 -8.01059 -6.87225 -5.80226 -3.14530 0.71639 1.25446 1.80330 2.64035 3.21064 3.30127 3.38423 3.43184 3.44277 3.70544 4.16336 4.31167 4.43186 4.46178 4.67050 4.69961 4.85308 4.93602 5.02600 5.19077 5.29722 5.32117 5.35798 5.41000 5.41983 5.46003 5.52800 5.54181 5.75352 5.81758 5.85598 5.93388 5.95994 6.01120 6.06352 6.23916 6.24686 6.38081 6.41924 6.47516 6.58083 6.66682 6.72407 6.81756 6.92448 7.02207 7.35761 7.52800 7.58574 7.71373 8.20794 8.31999 9.10597 9.73465 10.50629 11.34013 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032395 B = 0.001733 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.130722 B =16152.075732 C =16644.531871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.110 4.110 3 C -0.099 4.099 4 C -0.124 4.124 5 C 0.079 3.921 6 N -0.579 5.579 7 H 0.420 0.580 8 C 0.109 3.891 9 C -0.225 4.225 10 C 0.587 3.413 11 O -0.545 6.545 12 N -0.723 5.723 13 C 0.157 3.843 14 C -0.149 4.149 15 H 0.102 0.898 16 C -0.162 4.162 17 H 0.103 0.897 18 C 0.184 3.816 19 N -0.594 5.594 20 C -0.228 4.228 21 H 0.076 0.924 22 C -0.005 4.005 23 N -0.916 5.916 24 Si 0.913 3.087 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.154 3.846 29 C -0.172 4.172 30 H 0.103 0.897 31 C -0.058 4.058 32 C -0.063 4.063 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.180 0.820 39 H 0.397 0.603 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.023 0.977 44 H 0.255 0.745 45 H 0.023 0.977 46 H 0.049 0.951 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.320 26.813 1.417 29.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.111 4.111 3 C -0.118 4.118 4 C -0.145 4.145 5 C -0.026 4.026 6 N -0.180 5.180 7 H 0.257 0.743 8 C -0.024 4.024 9 C -0.236 4.236 10 C 0.375 3.625 11 O -0.423 6.423 12 N -0.374 5.374 13 C 0.034 3.966 14 C -0.168 4.168 15 H 0.120 0.880 16 C -0.182 4.182 17 H 0.121 0.879 18 C 0.058 3.942 19 N -0.318 5.318 20 C -0.356 4.356 21 H 0.093 0.907 22 C -0.203 4.203 23 N -0.562 5.562 24 Si 0.743 3.257 25 H -0.211 1.211 26 H -0.215 1.215 27 H -0.210 1.210 28 C 0.028 3.972 29 C -0.192 4.192 30 H 0.121 0.879 31 C -0.063 4.063 32 C -0.082 4.082 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.197 0.803 39 H 0.231 0.769 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.041 0.959 46 H 0.068 0.932 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.906 26.293 1.328 28.894 hybrid contribution 1.369 -0.347 0.220 1.429 sum -10.537 25.946 1.547 28.046 Atomic orbital electron populations 1.20729 0.90991 1.02680 1.02230 1.19742 0.96164 0.92585 1.02604 1.20701 0.92832 0.97642 1.00640 1.19973 0.93820 0.94620 1.06079 1.18249 0.83012 0.95416 1.05932 1.41510 1.06327 1.06856 1.63326 0.74267 1.22141 0.99161 0.82715 0.98369 1.20084 0.92147 0.92565 1.18808 1.17195 0.84726 0.84524 0.76051 1.90768 1.22315 1.78616 1.50647 1.45853 1.08848 1.06893 1.75852 1.20852 0.95687 0.77934 1.02163 1.22523 0.97138 0.94025 1.03105 0.88023 1.24236 1.01905 0.91001 1.01079 0.87863 1.21063 0.85899 0.98664 0.88549 1.45195 1.56752 1.13092 1.16742 1.18949 1.26727 0.96810 0.93129 0.90656 1.24894 1.00490 0.99727 0.95147 1.69883 1.52340 1.35000 0.98976 0.86193 0.79034 0.83303 0.77184 1.21064 1.21533 1.21008 1.21130 0.90504 0.89603 0.95953 1.23999 0.99706 1.04063 0.91432 0.87914 1.18719 0.93018 0.90558 1.03959 1.20584 0.91796 0.98224 0.97566 0.91353 0.91457 0.91751 0.85649 0.86092 0.80253 0.76870 0.91084 0.91411 0.89195 0.95898 0.93497 0.95941 0.93242 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.00 36.00 0.36 -0.42 16 2 C -0.11 -1.05 5.88 -104.61 -0.62 -1.66 16 3 C -0.10 -0.80 9.66 -39.56 -0.38 -1.18 16 4 C -0.12 -0.99 10.07 -39.43 -0.40 -1.39 16 5 C 0.08 0.75 7.26 -83.96 -0.61 0.14 16 6 N -0.58 -3.87 5.99 -10.48 -0.06 -3.94 16 7 H 0.42 1.32 8.96 -40.82 -0.37 0.95 16 8 C 0.11 0.82 11.33 -16.62 -0.19 0.64 16 9 C -0.23 -2.61 6.27 -103.31 -0.65 -3.26 16 10 C 0.59 8.13 7.80 -12.75 -0.10 8.03 16 11 O -0.55 -9.55 16.16 5.22 0.08 -9.46 16 12 N -0.72 -8.57 5.54 -61.54 -0.34 -8.91 16 13 C 0.16 2.15 5.95 -4.04 -0.02 2.12 16 14 C -0.15 -2.24 5.39 -90.62 -0.49 -2.73 16 15 H 0.10 1.49 8.04 -51.94 -0.42 1.07 16 16 C -0.16 -3.03 6.85 -89.22 -0.61 -3.64 16 17 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 18 C 0.18 4.37 5.70 -2.40 -0.01 4.35 16 19 N -0.59 -15.11 3.38 -168.85 -0.57 -15.68 16 20 C -0.23 -6.33 10.35 -15.06 -0.16 -6.48 16 21 H 0.08 2.02 7.85 -52.49 -0.41 1.60 16 22 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 23 N -0.92 -26.67 10.86 55.49 0.60 -26.07 16 24 Si 0.91 21.85 29.56 -169.99 -5.03 16.82 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 C 0.15 3.17 7.04 -2.41 -0.02 3.15 16 29 C -0.17 -2.99 6.74 -89.22 -0.60 -3.59 16 30 H 0.10 1.67 8.12 -51.93 -0.42 1.25 16 31 C -0.06 -0.70 6.27 -104.95 -0.66 -1.36 16 32 C -0.06 -0.76 9.49 -39.37 -0.37 -1.13 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 38 H 0.18 0.69 7.38 -52.49 -0.39 0.30 16 39 H 0.40 3.55 7.28 -40.82 -0.30 3.25 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.98 7.94 -51.93 -0.41 0.57 16 42 H 0.09 2.40 6.51 -51.94 -0.34 2.06 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.13 1.73 7.45 -52.49 -0.39 1.34 16 LS Contribution 389.25 15.07 5.87 5.87 Total: -1.00 -34.79 389.25 -11.86 -46.65 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.80 Total: 3.39 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -5.62 Total: -8.66 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.37 Total: -54.59 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.79 -11.86 -46.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979087233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.552 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds