Wall clock time and date at job start Tue Mar 31 2020 22:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38763 * 119.84817 * 2 1 4 4 C 1.37759 * 120.63159 * 180.02562 * 3 2 1 5 5 C 1.39125 * 119.93442 * 359.96955 * 4 3 2 6 6 N 1.37962 * 133.19167 * 180.02562 * 5 4 3 7 7 H 0.97001 * 124.78161 * 0.03471 * 6 5 4 8 8 C 1.35470 * 110.42742 * 180.02562 * 6 5 4 9 9 C 1.36374 * 109.76957 * 0.02562 * 8 6 5 10 10 C 1.46913 * 126.77118 * 180.02562 * 9 8 6 11 11 O 1.21670 * 120.00206 * 180.02562 * 10 9 8 12 12 N 1.34775 * 119.99676 * 0.02562 * 10 9 8 13 13 C 1.46504 * 119.99969 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46970 * 180.02562 * 13 12 10 15 15 H 1.08989 * 115.52066 * 330.42023 * 14 13 12 16 16 C 1.52999 * 117.43875 * 185.00043 * 14 13 12 17 17 H 1.09003 * 119.54388 * 4.12094 * 16 14 13 18 18 C 1.54394 * 118.12318 * 160.81182 * 16 14 13 19 19 N 1.48150 * 104.61758 * 87.18847 * 18 16 14 20 20 C 1.36931 * 127.83803 * 140.39285 * 19 18 16 21 21 H 1.08001 * 120.00124 * 195.59473 * 20 19 18 22 22 C 1.38814 * 119.99750 * 15.60247 * 20 19 18 23 23 N 1.31616 * 120.00298 * 9.09475 * 22 20 19 24 24 Si 1.86805 * 119.99979 * 189.09476 * 22 20 19 25 25 H 1.48499 * 109.47206 * 59.99568 * 24 22 20 26 26 H 1.48500 * 109.47171 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46918 * 299.99947 * 24 22 20 28 28 C 1.48147 * 104.32421 * 320.42061 * 19 18 16 29 29 C 1.53000 * 117.43745 * 115.76324 * 14 13 12 30 30 H 1.08997 * 119.54711 * 355.87755 * 29 14 13 31 31 C 1.40396 * 119.35635 * 0.31139 * 5 4 3 32 32 C 1.37752 * 119.85039 * 179.97438 * 2 1 3 33 33 H 1.09007 * 109.46934 * 89.99771 * 1 2 3 34 34 H 1.08997 * 109.47309 * 210.00068 * 1 2 3 35 35 H 1.09000 * 109.47018 * 330.00629 * 1 2 3 36 36 H 1.07993 * 119.68142 * 359.97438 * 3 2 1 37 37 H 1.08003 * 120.03632 * 179.97438 * 4 3 2 38 38 H 1.07997 * 125.11641 * 179.97438 * 8 6 5 39 39 H 0.97005 * 120.00426 * 0.02562 * 12 10 9 40 40 H 1.09004 * 109.47039 * 60.00731 * 13 12 10 41 41 H 1.08997 * 109.47173 * 300.00517 * 13 12 10 42 42 H 1.08989 * 110.40978 * 205.97524 * 18 16 14 43 43 H 1.09004 * 110.39975 * 328.41079 * 18 16 14 44 44 H 0.97000 * 120.00355 * 180.02562 * 23 22 20 45 45 H 1.09002 * 110.40587 * 280.79723 * 28 19 18 46 46 H 1.09002 * 110.50568 * 158.42081 * 28 19 18 47 47 H 1.08000 * 120.16028 * 0.02562 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.2036 0.0000 4 6 3.5751 1.2224 -0.0005 5 6 4.2857 0.0263 -0.0004 6 7 5.6328 -0.2716 -0.0004 7 1 6.3451 0.3867 0.0000 8 6 5.8202 -1.6133 -0.0009 9 6 4.6130 -2.2477 -0.0018 10 6 4.3820 -3.6986 -0.0020 11 8 3.2458 -4.1337 -0.0033 12 7 5.4287 -4.5476 -0.0007 13 6 5.1984 -5.9944 -0.0003 14 6 6.5428 -6.7248 0.0018 15 1 7.3644 -6.1976 -0.4828 16 6 6.5167 -8.2500 -0.1159 17 1 5.5656 -8.7614 -0.2644 18 6 7.8082 -8.9676 -0.5643 19 7 8.5657 -9.1918 0.6890 20 6 9.2929 -10.2962 1.0448 21 1 9.5866 -10.4407 2.0740 22 6 9.6526 -11.2298 0.0826 23 7 9.4541 -10.9708 -1.1924 24 14 10.4185 -12.8540 0.5975 25 1 9.4745 -13.5899 1.4763 26 1 10.7084 -13.6692 -0.6095 27 1 11.6810 -12.5941 1.3349 28 6 8.3574 -7.9504 1.4703 29 6 6.8789 -7.5794 1.2256 30 1 6.1977 -7.5912 2.0764 31 6 3.5853 -1.1904 -0.0064 32 6 2.1926 -1.1948 0.0005 33 1 -0.3633 0.0000 -1.0277 34 1 -0.3634 -0.8899 0.5138 35 1 -0.3633 0.8900 0.5137 36 1 1.6500 2.1343 -0.0004 37 1 4.1028 2.1647 -0.0009 38 1 6.7811 -2.1063 -0.0013 39 1 6.3347 -4.2007 0.0007 40 1 4.6348 -6.2728 -0.8908 41 1 4.6330 -6.2721 0.8892 42 1 7.5691 -9.9189 -1.0392 43 1 8.3779 -8.3345 -1.2446 44 1 9.7051 -11.6234 -1.8648 45 1 9.0130 -7.1587 1.1076 46 1 8.5332 -8.1325 2.5305 47 1 1.6528 -2.1302 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979087233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:00 Heat of formation + Delta-G solvation = 53.143401 kcal Electronic energy + Delta-G solvation = -27488.557136 eV Core-core repulsion = 23637.093836 eV Total energy + Delta-G solvation = -3851.463301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.39571 -40.70062 -39.86835 -38.31612 -36.27944 -34.95408 -33.21171 -32.63940 -32.30887 -30.30962 -28.88373 -28.54844 -27.33732 -26.58244 -23.87830 -23.59167 -22.74792 -21.97663 -21.71048 -20.84175 -20.34353 -19.15549 -18.81247 -17.49275 -17.34498 -16.85457 -16.58592 -16.35137 -15.95326 -15.83979 -15.51974 -15.25091 -15.16151 -14.78748 -14.65744 -14.54179 -14.28580 -14.20612 -14.01208 -13.58725 -13.32966 -13.16438 -12.96505 -12.87130 -12.68031 -12.48790 -12.32181 -12.13226 -11.96868 -11.94434 -11.89377 -11.74896 -11.11915 -10.87613 -10.72009 -10.66831 -10.52732 -10.01172 -9.13365 -8.89238 -8.70807 -7.90798 -5.26761 0.03003 0.55800 1.04032 1.46491 1.49912 1.56250 2.05284 2.22662 2.43534 2.48491 2.76969 2.94258 3.27419 3.64721 3.70133 3.72984 3.85991 3.88312 3.92852 4.08360 4.21174 4.29971 4.31813 4.41966 4.45721 4.48612 4.57804 4.63940 4.71070 4.74094 4.83978 4.86162 4.90294 4.96490 5.04461 5.14104 5.20988 5.24568 5.36672 5.42066 5.45878 5.50907 5.55024 5.57089 5.64746 5.68000 5.78592 6.14915 6.19334 6.56299 6.68914 7.02204 7.35218 7.69758 8.48062 9.22717 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032395 B = 0.001733 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.130722 B =16152.075732 C =16644.531871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.110 4.110 3 C -0.108 4.108 4 C -0.114 4.114 5 C 0.066 3.934 6 N -0.559 5.559 7 H 0.441 0.559 8 C 0.149 3.851 9 C -0.278 4.278 10 C 0.585 3.415 11 O -0.596 6.596 12 N -0.711 5.711 13 C 0.166 3.834 14 C -0.105 4.105 15 H 0.115 0.885 16 C -0.179 4.179 17 H 0.110 0.890 18 C 0.190 3.810 19 N -0.621 5.621 20 C -0.242 4.242 21 H 0.080 0.920 22 C -0.063 4.063 23 N -0.947 5.947 24 Si 0.979 3.021 25 H -0.279 1.279 26 H -0.294 1.294 27 H -0.274 1.274 28 C 0.150 3.850 29 C -0.161 4.161 30 H 0.121 0.879 31 C -0.088 4.088 32 C -0.103 4.103 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.224 0.776 39 H 0.414 0.586 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.005 0.995 44 H 0.250 0.750 45 H 0.032 0.968 46 H 0.055 0.945 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.268 30.019 2.418 31.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.111 4.111 3 C -0.126 4.126 4 C -0.134 4.134 5 C -0.039 4.039 6 N -0.162 5.162 7 H 0.282 0.718 8 C 0.013 3.987 9 C -0.288 4.288 10 C 0.376 3.624 11 O -0.478 6.478 12 N -0.363 5.363 13 C 0.042 3.958 14 C -0.123 4.123 15 H 0.133 0.867 16 C -0.200 4.200 17 H 0.128 0.872 18 C 0.064 3.936 19 N -0.345 5.345 20 C -0.370 4.370 21 H 0.098 0.902 22 C -0.257 4.257 23 N -0.595 5.595 24 Si 0.807 3.193 25 H -0.205 1.205 26 H -0.220 1.220 27 H -0.199 1.199 28 C 0.025 3.975 29 C -0.180 4.180 30 H 0.139 0.861 31 C -0.093 4.093 32 C -0.122 4.122 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.240 0.760 39 H 0.251 0.749 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.023 0.977 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.074 0.926 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.818 29.572 2.354 31.576 hybrid contribution 1.056 -1.220 -0.083 1.615 sum -9.762 28.352 2.271 30.072 Atomic orbital electron populations 1.20779 0.89769 1.03278 1.02803 1.20050 0.97289 0.92491 1.01302 1.21073 0.93351 0.97993 1.00222 1.20411 0.93918 0.95398 1.03703 1.18417 0.84019 0.95003 1.06490 1.41529 1.05994 1.07113 1.61544 0.71761 1.22687 0.99330 0.82784 0.93871 1.19974 0.93954 0.91307 1.23595 1.17569 0.84138 0.85699 0.74989 1.90737 1.24301 1.79559 1.53183 1.45621 1.09493 1.05768 1.75371 1.20616 0.94417 0.79025 1.01750 1.22390 0.97979 0.91610 1.00369 0.86738 1.23929 0.99786 0.93537 1.02703 0.87241 1.20788 0.87789 0.97004 0.87980 1.45516 1.56975 1.14287 1.17741 1.19342 1.26420 0.97834 0.93442 0.90212 1.25728 1.01667 1.03052 0.95205 1.70080 1.53723 1.35786 0.99869 0.85152 0.78460 0.79119 0.76588 1.20503 1.21997 1.19920 1.21290 0.92513 0.87992 0.95722 1.23929 0.97875 1.04339 0.91890 0.86128 1.19062 0.93386 0.92229 1.04584 1.20542 0.92503 0.98094 1.01075 0.90720 0.92351 0.89628 0.82704 0.82701 0.75979 0.74864 0.91732 0.91868 0.93068 0.97711 0.94141 0.95050 0.92602 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 10.00 71.23 0.71 -0.84 16 2 C -0.11 -2.11 5.88 -19.85 -0.12 -2.22 16 3 C -0.11 -1.51 9.66 22.28 0.22 -1.29 16 4 C -0.11 -1.48 10.07 22.37 0.23 -1.26 16 5 C 0.07 1.11 7.26 38.92 0.28 1.39 16 6 N -0.56 -5.46 5.99 -187.08 -1.12 -6.58 16 7 H 0.44 0.70 8.96 -92.71 -0.83 -0.13 16 8 C 0.15 1.76 11.33 83.70 0.95 2.70 16 9 C -0.28 -6.23 6.27 -19.01 -0.12 -6.35 16 10 C 0.59 16.27 7.80 86.51 0.67 16.94 16 11 O -0.60 -22.04 16.16 -4.25 -0.07 -22.10 16 12 N -0.71 -15.67 5.54 -466.84 -2.59 -18.25 16 13 C 0.17 4.33 5.95 86.38 0.51 4.84 16 14 C -0.10 -2.94 5.39 -10.79 -0.06 -3.00 16 15 H 0.11 3.02 8.04 -2.39 -0.02 3.00 16 16 C -0.18 -6.65 6.85 -9.88 -0.07 -6.71 16 17 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 18 C 0.19 9.26 5.70 86.54 0.49 9.76 16 19 N -0.62 -31.86 3.38 -688.13 -2.33 -34.18 16 20 C -0.24 -13.54 10.35 84.03 0.87 -12.67 16 21 H 0.08 4.27 7.85 -2.91 -0.02 4.24 16 22 C -0.06 -3.57 5.40 84.86 0.46 -3.11 16 23 N -0.95 -56.88 10.86 21.65 0.24 -56.65 16 24 Si 0.98 45.49 29.56 68.60 2.03 47.51 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 27 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 28 C 0.15 5.97 7.04 86.54 0.61 6.58 16 29 C -0.16 -5.30 6.74 -9.89 -0.07 -5.37 16 30 H 0.12 3.62 8.12 -2.39 -0.02 3.60 16 31 C -0.09 -2.15 6.27 -20.08 -0.13 -2.28 16 32 C -0.10 -2.66 9.49 22.40 0.21 -2.44 16 33 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.06 0.91 8.08 -2.39 -0.02 0.89 16 35 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 36 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 37 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 38 H 0.22 0.52 7.38 -2.91 -0.02 0.50 16 39 H 0.41 6.06 7.28 -92.70 -0.68 5.38 16 40 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.06 1.76 7.94 -2.39 -0.02 1.74 16 42 H 0.05 2.87 6.51 -2.39 -0.02 2.85 16 43 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 44 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 45 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.10 3.13 7.45 -2.91 -0.02 3.11 16 Total: -1.00 -81.25 389.25 1.32 -79.92 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -0.50 Total: 15.66 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 5.66 Total: -5.34 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -5.80 Total: -115.66 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.07 Total: -22.10 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -81.25 1.32 -79.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979087233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.068 kcal (2) G-P(sol) polarization free energy of solvation -81.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds