Wall clock time and date at job start Tue Mar 31 2020 22:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39306 * 119.06003 * 2 1 4 4 C 1.38854 * 119.58206 * 180.02562 * 3 2 1 5 5 C 1.47899 * 121.11423 * 179.97438 * 4 3 2 6 6 O 1.21545 * 120.00125 * 227.87943 * 5 4 3 7 7 N 1.34776 * 120.00058 * 47.88442 * 5 4 3 8 8 C 1.47023 * 125.64851 * 4.86385 * 7 5 4 9 9 C 1.54336 * 107.26773 * 178.85183 * 8 7 5 10 10 C 1.55164 * 103.01735 * 338.13841 * 9 8 7 11 11 H 1.08994 * 111.00248 * 277.23006 * 10 9 8 12 12 N 1.46501 * 110.99976 * 153.38083 * 10 9 8 13 13 C 1.46498 * 120.00198 * 306.35215 * 12 10 9 14 14 C 1.36934 * 119.99729 * 126.34993 * 12 10 9 15 15 H 1.07997 * 120.00221 * 320.59157 * 14 12 10 16 16 C 1.38818 * 119.99787 * 140.59489 * 14 12 10 17 17 N 1.31617 * 119.99739 * 158.10198 * 16 14 12 18 18 Si 1.86803 * 120.00046 * 338.10099 * 16 14 12 19 19 H 1.48502 * 109.46911 * 95.09667 * 18 16 14 20 20 H 1.48497 * 109.46768 * 215.09709 * 18 16 14 21 21 H 1.48494 * 109.47157 * 335.09743 * 18 16 14 22 22 C 1.47425 * 125.64812 * 185.17194 * 7 5 4 23 23 C 1.41829 * 117.77436 * 359.97438 * 4 3 2 24 24 C 1.40100 * 121.36601 * 180.02562 * 23 4 3 25 25 C 1.36248 * 119.64130 * 179.97438 * 24 23 4 26 26 C 1.39352 * 120.83416 * 0.02562 * 25 24 23 27 27 C 1.36068 * 121.05055 * 359.97069 * 26 25 24 28 28 C 1.40708 * 119.73935 * 0.02948 * 27 26 25 29 29 N 1.30967 * 119.05549 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47100 * 90.00115 * 1 2 3 31 31 H 1.09000 * 109.46634 * 210.00193 * 1 2 3 32 32 H 1.08996 * 109.46739 * 329.99968 * 1 2 3 33 33 H 1.08006 * 120.21091 * 0.26910 * 3 2 1 34 34 H 1.09003 * 109.87854 * 298.39784 * 8 7 5 35 35 H 1.09000 * 109.88078 * 59.56220 * 8 7 5 36 36 H 1.08998 * 110.84884 * 219.67390 * 9 8 7 37 37 H 1.08995 * 110.66730 * 96.52002 * 9 8 7 38 38 H 1.08997 * 109.47678 * 84.66542 * 13 12 10 39 39 H 1.09005 * 109.47259 * 204.66864 * 13 12 10 40 40 H 1.09005 * 109.47042 * 324.66665 * 13 12 10 41 41 H 0.97002 * 120.00083 * 179.97438 * 17 16 14 42 42 H 1.08998 * 110.36946 * 322.92953 * 22 7 5 43 43 H 1.09004 * 110.36914 * 85.14589 * 22 7 5 44 44 H 1.08000 * 120.18106 * 359.94882 * 24 23 4 45 45 H 1.08004 * 119.58497 * 180.02562 * 25 24 23 46 46 H 1.07994 * 119.47627 * 180.02562 * 26 25 24 47 47 H 1.07998 * 120.12833 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1837 1.2177 0.0000 4 6 3.5722 1.2303 -0.0005 5 6 4.3249 2.5035 -0.0011 6 8 5.2416 2.6672 -0.7823 7 7 3.9944 3.4821 0.8646 8 6 2.9809 3.3819 1.9249 9 6 2.9695 4.7298 2.6767 10 6 4.3675 5.3212 2.3549 11 1 5.1271 4.9135 3.0218 12 7 4.3459 6.7846 2.4193 13 6 3.3601 7.5377 1.6401 14 6 5.2472 7.4486 3.2080 15 1 5.5097 7.0535 4.1782 16 6 5.8234 8.6295 2.7603 17 7 6.3297 9.4835 3.6244 18 14 5.8803 9.0065 0.9316 19 1 4.7165 9.8526 0.5642 20 1 7.1379 9.7295 0.6142 21 1 5.8317 7.7370 0.1627 22 6 4.5848 4.8325 0.9011 23 6 4.2445 -0.0185 -0.0005 24 6 5.6435 -0.0935 -0.0005 25 6 6.2530 -1.3121 0.0001 26 6 5.5023 -2.4861 0.0001 27 6 4.1421 -2.4495 0.0001 28 6 3.4773 -1.2094 -0.0004 29 7 2.1431 -1.1449 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3632 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6318 2.1461 0.0044 34 1 2.0017 3.1923 1.4850 35 1 3.2425 2.5780 2.6130 36 1 2.8540 4.5747 3.7494 37 1 2.1799 5.3767 2.2947 38 1 2.4256 7.5985 2.1979 39 1 3.7369 8.5431 1.4519 40 1 3.1842 7.0319 0.6907 41 1 6.7327 10.3086 3.3116 42 1 5.6493 4.7875 0.6711 43 1 4.0729 5.4895 0.1978 44 1 6.2357 0.8097 -0.0013 45 1 7.3315 -1.3688 0.0005 46 1 6.0081 -3.4403 0.0009 47 1 3.5750 -3.3686 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980321392.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:33 Heat of formation + Delta-G solvation = 57.072208 kcal Electronic energy + Delta-G solvation = -29252.295169 eV Core-core repulsion = 25401.002234 eV Total energy + Delta-G solvation = -3851.292935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.36580 -39.71987 -37.71408 -37.57557 -35.09275 -33.72389 -32.29275 -31.92587 -30.63574 -30.07027 -28.40400 -28.00114 -26.31131 -25.22754 -23.83713 -22.86742 -22.61997 -22.25278 -19.55064 -19.38722 -18.39519 -17.72082 -17.27195 -17.09038 -16.10155 -15.95151 -15.37428 -15.16127 -14.97164 -14.83096 -14.26321 -14.14306 -13.95115 -13.73330 -13.44314 -13.33779 -13.20887 -12.90308 -12.69382 -12.57024 -12.43078 -12.33622 -12.10033 -11.79055 -11.76972 -11.63629 -11.57630 -10.98658 -10.87672 -10.74869 -10.61230 -10.38760 -10.25340 -10.04310 -9.71716 -9.59011 -8.95249 -8.64991 -8.58894 -8.45439 -6.94350 -6.10954 -3.56991 -0.05131 0.52442 1.54309 2.50806 2.69569 2.92690 3.25084 3.42309 3.47007 3.82252 3.84424 4.12869 4.36724 4.42850 4.43696 4.57964 4.67963 4.81836 4.83479 4.99113 5.04929 5.07199 5.14238 5.18385 5.23045 5.27198 5.30320 5.45122 5.53035 5.55026 5.63191 5.66196 5.77790 5.80095 5.82727 6.04185 6.08045 6.10530 6.20354 6.23270 6.25026 6.32343 6.35926 6.54521 6.58035 6.60240 6.71231 7.47642 7.62273 7.92821 8.01756 8.27023 8.84031 9.57307 9.96441 11.03837 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.002909 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.224373 B = 9623.800918 C =10464.348120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.158 3.842 3 C -0.141 4.141 4 C -0.050 4.050 5 C 0.570 3.430 6 O -0.528 6.528 7 N -0.603 5.603 8 C 0.099 3.901 9 C -0.149 4.149 10 C 0.172 3.828 11 H 0.089 0.911 12 N -0.593 5.593 13 C 0.107 3.893 14 C -0.278 4.278 15 H 0.081 0.919 16 C 0.041 3.959 17 N -0.895 5.895 18 Si 0.879 3.121 19 H -0.285 1.285 20 H -0.299 1.299 21 H -0.267 1.267 22 C 0.080 3.920 23 C -0.075 4.075 24 C -0.086 4.086 25 C -0.118 4.118 26 C -0.096 4.096 27 C -0.099 4.099 28 C 0.134 3.866 29 N -0.467 5.467 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.145 0.855 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.020 0.980 39 H 0.051 0.949 40 H 0.029 0.971 41 H 0.265 0.735 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.140 0.860 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.924 -21.940 -6.234 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.005 3.995 3 C -0.162 4.162 4 C -0.061 4.061 5 C 0.357 3.643 6 O -0.405 6.405 7 N -0.336 5.336 8 C -0.024 4.024 9 C -0.189 4.189 10 C 0.062 3.938 11 H 0.107 0.893 12 N -0.315 5.315 13 C -0.037 4.037 14 C -0.406 4.406 15 H 0.099 0.901 16 C -0.161 4.161 17 N -0.535 5.535 18 Si 0.709 3.291 19 H -0.213 1.213 20 H -0.227 1.227 21 H -0.192 1.192 22 C -0.043 4.043 23 C -0.078 4.078 24 C -0.104 4.104 25 C -0.136 4.136 26 C -0.116 4.116 27 C -0.117 4.117 28 C 0.012 3.988 29 N -0.177 5.177 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.162 0.838 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.157 0.843 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.691 -22.518 -6.637 25.398 hybrid contribution 0.548 1.197 -1.130 1.735 sum -9.143 -21.321 -7.768 24.465 Atomic orbital electron populations 1.20799 0.88056 1.03970 1.03513 1.21403 0.97272 0.87565 0.93250 1.22251 0.93284 0.99933 1.00712 1.20394 0.93995 0.93204 0.98496 1.17713 0.83374 0.82365 0.80857 1.90809 1.29289 1.80664 1.39726 1.48441 1.39613 1.13633 1.31939 1.22220 0.91200 0.99734 0.89282 1.23142 1.01120 0.94230 1.00430 1.21649 0.94481 0.85370 0.92288 0.89301 1.43976 1.35285 0.99312 1.52887 1.21357 0.92510 0.96216 0.93642 1.18773 1.19111 1.05551 0.97213 0.90136 1.25539 0.96341 0.96914 0.97288 1.69856 1.40618 1.09259 1.33741 0.86905 0.76225 0.78293 0.87721 1.21294 1.22684 1.19182 1.23218 0.99361 0.80271 1.01495 1.18606 0.94967 0.92179 1.02011 1.21244 0.92919 0.99354 0.96896 1.21010 1.00629 0.92069 0.99890 1.20960 0.93711 0.98788 0.98110 1.20772 0.94201 0.96038 1.00739 1.18781 0.88794 0.92745 0.98472 1.67636 1.08681 1.28779 1.12568 0.89974 0.90043 0.90198 0.83755 0.91601 0.91504 0.89988 0.90434 0.96222 0.93049 0.95287 0.92474 0.90306 0.91314 0.84258 0.85219 0.85118 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.14 36.01 0.37 -0.35 16 2 C 0.16 1.66 6.78 -82.56 -0.56 1.10 16 3 C -0.14 -1.56 8.17 -38.96 -0.32 -1.88 16 4 C -0.05 -0.68 5.37 -104.34 -0.56 -1.24 16 5 C 0.57 9.11 6.88 -12.31 -0.08 9.02 16 6 O -0.53 -10.11 15.61 5.33 0.08 -10.03 16 7 N -0.60 -9.15 3.33 -171.60 -0.57 -9.72 16 8 C 0.10 1.20 6.00 -3.06 -0.02 1.18 16 9 C -0.15 -2.08 6.51 -24.89 -0.16 -2.25 16 10 C 0.17 3.12 3.55 -65.78 -0.23 2.89 16 11 H 0.09 1.68 7.96 -51.93 -0.41 1.27 16 12 N -0.59 -13.13 2.48 -171.03 -0.42 -13.56 16 13 C 0.11 2.18 8.16 59.85 0.49 2.66 16 14 C -0.28 -7.41 9.85 -15.06 -0.15 -7.56 16 15 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 16 C 0.04 1.14 5.26 -17.43 -0.09 1.05 16 17 N -0.89 -26.54 13.97 55.49 0.78 -25.77 16 18 Si 0.88 21.68 25.13 -169.99 -4.27 17.41 16 19 H -0.29 -6.81 6.68 56.52 0.38 -6.43 16 20 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 22 C 0.08 1.43 6.51 -2.53 -0.02 1.41 16 23 C -0.07 -1.02 5.76 -106.52 -0.61 -1.64 16 24 C -0.09 -1.11 9.21 -39.60 -0.36 -1.47 16 25 C -0.12 -1.20 9.96 -39.88 -0.40 -1.60 16 26 C -0.10 -0.85 9.94 -39.95 -0.40 -1.25 16 27 C -0.10 -1.01 9.98 -39.43 -0.39 -1.41 16 28 C 0.13 1.69 6.61 -84.87 -0.56 1.13 16 29 N -0.47 -5.71 10.19 -7.25 -0.07 -5.78 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 33 H 0.14 1.30 6.51 -52.48 -0.34 0.96 16 34 H 0.07 0.65 6.00 -51.93 -0.31 0.33 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.07 6.92 -51.93 -0.36 0.71 16 38 H 0.02 0.37 7.88 -51.93 -0.41 -0.04 16 39 H 0.05 1.15 3.76 -51.93 -0.20 0.96 16 40 H 0.03 0.52 6.28 -51.93 -0.33 0.20 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.08 1.55 7.99 -51.93 -0.41 1.14 16 43 H 0.07 1.26 6.25 -51.93 -0.32 0.93 16 44 H 0.14 1.99 6.27 -52.49 -0.33 1.66 16 45 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 46 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 47 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -32.50 373.24 -9.31 -41.81 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.39 Total: 0.21 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -4.07 Total: -0.20 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.29 Total: -54.82 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.27 Total: 17.41 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.50 -9.31 -41.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980321392.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.886 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds