Wall clock time and date at job start Tue Mar 31 2020 22:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36619 * 120.92034 * 2 1 4 4 C 1.39267 * 119.90414 * 180.02562 * 3 2 1 5 5 N 1.31147 * 121.77088 * 359.96263 * 4 3 2 6 6 C 1.33616 * 121.39589 * 0.02562 * 5 4 3 7 7 C 1.40765 * 120.83685 * 180.28851 * 6 5 4 8 8 C 1.35696 * 120.11259 * 180.23151 * 7 6 5 9 9 C 1.40638 * 120.92342 * 359.50055 * 8 7 6 10 10 C 1.47761 * 119.80276 * 180.25576 * 9 8 7 11 11 O 1.21564 * 119.99887 * 25.98715 * 10 9 8 12 12 N 1.34779 * 120.00254 * 205.99226 * 10 9 8 13 13 C 1.48211 * 119.97314 * 173.84830 * 12 10 9 14 14 C 1.47145 * 110.34267 * 102.46439 * 13 12 10 15 15 C 1.53793 * 111.83976 * 58.29842 * 14 13 12 16 16 N 1.43466 * 107.96024 * 281.67060 * 15 14 13 17 17 C 1.36941 * 118.94153 * 273.62736 * 16 15 14 18 18 H 1.08005 * 119.99508 * 24.82339 * 17 16 15 19 19 C 1.38811 * 120.00216 * 204.81962 * 17 16 15 20 20 N 1.31618 * 119.99697 * 17.61419 * 19 17 16 21 21 Si 1.86794 * 120.00049 * 197.61393 * 19 17 16 22 22 H 1.48501 * 109.47094 * 90.00298 * 21 19 17 23 23 H 1.48507 * 109.47323 * 210.00086 * 21 19 17 24 24 H 1.48496 * 109.47233 * 330.00203 * 21 19 17 25 25 C 1.48858 * 122.12175 * 93.65324 * 16 15 14 26 26 C 1.43614 * 119.96945 * 353.57179 * 12 10 9 27 27 C 1.38550 * 120.39465 * 0.22982 * 9 8 7 28 28 C 1.40179 * 119.40225 * 0.02816 * 27 9 8 29 29 H 1.08996 * 109.47475 * 270.01343 * 1 2 3 30 30 H 1.08998 * 109.47203 * 30.01898 * 1 2 3 31 31 H 1.09003 * 109.46986 * 150.01407 * 1 2 3 32 32 H 1.07997 * 120.04286 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.11122 * 179.97438 * 4 3 2 34 34 H 1.07998 * 119.94547 * 0.02562 * 7 6 5 35 35 H 1.07996 * 119.53969 * 179.77468 * 8 7 6 36 36 H 1.08996 * 109.32811 * 222.72953 * 13 12 10 37 37 H 1.08998 * 109.32894 * 342.37456 * 13 12 10 38 38 H 1.09003 * 109.00491 * 178.90514 * 14 13 12 39 39 H 1.08998 * 109.00523 * 297.76649 * 14 13 12 40 40 H 1.08994 * 109.76698 * 41.28493 * 15 14 13 41 41 H 1.09001 * 109.76138 * 162.00677 * 15 14 13 42 42 H 0.97002 * 119.99798 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.48113 * 80.57655 * 25 16 15 44 44 H 1.08999 * 109.48367 * 200.61645 * 25 16 15 45 45 H 1.09001 * 108.87566 * 31.47227 * 26 12 10 46 46 H 1.08998 * 108.87428 * 149.90991 * 26 12 10 47 47 H 1.08002 * 120.29749 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6014 1.1473 -0.0005 5 7 4.2721 0.0203 -0.0003 6 6 3.6479 -1.1611 -0.0001 7 6 4.3795 -2.3637 0.0062 8 6 3.7305 -3.5554 0.0016 9 6 2.3253 -3.6131 0.0011 10 6 1.6441 -4.9243 0.0018 11 8 2.2035 -5.8996 0.4640 12 7 0.4026 -5.0391 -0.5102 13 6 -0.2264 -6.3753 -0.6344 14 6 -1.2088 -6.5803 0.4417 15 6 -2.3061 -5.5028 0.4276 16 7 -1.7661 -4.3137 1.0216 17 6 -1.8249 -4.1670 2.3818 18 1 -1.8837 -5.0386 3.0169 19 6 -1.8087 -2.8981 2.9444 20 7 -2.0842 -1.8460 2.2031 21 14 -1.3958 -2.6837 4.7535 22 1 0.0697 -2.5003 4.9084 23 1 -2.1028 -1.4906 5.2846 24 1 -1.8260 -3.8896 5.5057 25 6 -1.1446 -3.2340 0.2068 26 6 -0.3118 -3.8659 -0.9294 27 6 1.5759 -2.4478 0.0004 28 6 2.2308 -1.2084 -0.0002 29 1 -0.3634 0.0002 1.0276 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8901 -0.5136 32 1 1.6848 2.1163 -0.0004 33 1 4.1435 2.0815 -0.0010 34 1 5.4591 -2.3379 0.0114 35 1 4.3010 -4.4724 0.0028 36 1 -0.7278 -6.4497 -1.5994 37 1 0.5434 -7.1441 -0.5678 38 1 -1.6713 -7.5596 0.3184 39 1 -0.6946 -6.5492 1.4023 40 1 -2.6078 -5.2974 -0.5994 41 1 -3.1662 -5.8452 1.0030 42 1 -2.0733 -0.9593 2.5963 43 1 -1.9259 -2.6049 -0.2196 44 1 -0.4954 -2.6289 0.8397 45 1 0.4041 -3.1267 -1.2887 46 1 -0.9800 -4.1337 -1.7478 47 1 0.4968 -2.4939 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981243898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:56 Heat of formation + Delta-G solvation = 93.680228 kcal Electronic energy + Delta-G solvation = -31288.376295 eV Core-core repulsion = 27438.670803 eV Total energy + Delta-G solvation = -3849.705492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.11685 -39.79181 -37.26896 -36.55283 -34.76020 -34.32954 -33.06466 -31.16983 -30.53452 -29.90360 -28.12521 -27.60092 -25.73052 -24.11293 -23.88943 -23.49448 -22.13293 -20.91350 -19.89976 -19.35877 -18.13998 -17.21973 -16.75669 -16.47068 -15.89027 -15.80466 -15.12345 -14.82666 -14.59888 -14.33782 -14.26683 -13.85884 -13.61982 -13.33568 -13.05869 -12.95083 -12.76236 -12.66073 -12.48392 -12.37017 -12.20415 -11.78300 -11.61202 -11.51779 -11.29009 -11.11443 -10.95118 -10.80479 -10.58818 -10.33940 -10.22196 -9.98568 -9.89812 -9.81477 -9.52481 -9.20858 -8.66727 -8.57254 -8.15349 -7.96989 -6.83559 -5.93077 -3.31741 0.41580 0.85340 2.07875 2.66253 3.32711 3.39078 3.40062 3.43261 3.54006 4.22834 4.37275 4.41782 4.66710 4.74930 4.80103 4.92344 5.07947 5.19586 5.26436 5.30700 5.39708 5.45483 5.53414 5.57309 5.66261 5.67949 5.84663 5.87810 5.90990 5.91382 5.97363 6.05907 6.09754 6.18221 6.22473 6.36572 6.40675 6.42711 6.48665 6.53990 6.69956 6.73538 6.75137 6.91954 6.96194 7.10482 7.21100 7.72398 7.84578 7.99846 8.30576 8.56968 9.07542 9.74748 10.19499 11.15302 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009862 B = 0.005882 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.444989 B = 4759.246043 C = 6224.642101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.002 3.998 3 C -0.199 4.199 4 C 0.141 3.859 5 N -0.491 5.491 6 C 0.145 3.855 7 C -0.114 4.114 8 C -0.050 4.050 9 C -0.134 4.134 10 C 0.563 3.437 11 O -0.548 6.548 12 N -0.577 5.577 13 C 0.131 3.869 14 C -0.172 4.172 15 C 0.162 3.838 16 N -0.586 5.586 17 C -0.251 4.251 18 H 0.066 0.934 19 C 0.006 3.994 20 N -0.906 5.906 21 Si 0.893 3.107 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.141 3.859 26 C 0.048 3.952 27 C -0.096 4.096 28 C -0.115 4.115 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.136 0.864 33 H 0.156 0.844 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.035 0.965 41 H 0.049 0.951 42 H 0.253 0.747 43 H 0.051 0.949 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.134 3.172 -9.549 11.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.006 4.006 3 C -0.219 4.219 4 C -0.031 4.031 5 N -0.200 5.200 6 C 0.024 3.976 7 C -0.133 4.133 8 C -0.071 4.071 9 C -0.137 4.137 10 C 0.353 3.647 11 O -0.427 6.427 12 N -0.307 5.307 13 C 0.010 3.990 14 C -0.213 4.213 15 C 0.034 3.966 16 N -0.307 5.307 17 C -0.380 4.380 18 H 0.084 0.916 19 C -0.192 4.192 20 N -0.551 5.551 21 Si 0.723 3.277 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.016 3.984 26 C -0.078 4.078 27 C -0.113 4.113 28 C -0.117 4.117 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.154 0.846 33 H 0.173 0.827 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.114 0.886 45 H 0.102 0.898 46 H 0.086 0.914 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 6.300 2.699 -9.289 11.544 hybrid contribution -0.625 0.348 1.174 1.375 sum 5.675 3.047 -8.115 10.361 Atomic orbital electron populations 1.21071 0.88561 1.03440 1.05190 1.20458 0.97404 0.91819 0.90897 1.21708 0.95454 0.98829 1.05880 1.22905 0.91589 0.96292 0.92331 1.68024 1.39937 0.97726 1.14325 1.19011 0.89801 0.92430 0.96379 1.20571 1.00131 0.89797 1.02796 1.20833 0.92801 0.98332 0.95093 1.19938 0.94225 0.93438 1.06131 1.18150 0.81197 0.87892 0.77506 1.90708 1.66587 1.39369 1.46082 1.47211 1.14165 1.07714 1.61607 1.20589 0.96190 0.83683 0.98562 1.21884 0.99264 0.99987 1.00160 1.20321 0.93262 0.86945 0.96110 1.43554 1.66148 1.17482 1.03550 1.19201 1.44861 0.91914 0.82042 0.91575 1.24875 1.00510 0.96209 0.97572 1.70015 1.51836 0.97981 1.35260 0.86414 0.78335 0.77433 0.85483 1.21441 1.21648 1.20399 1.22268 0.94744 0.90509 0.90900 1.22844 0.96695 0.88603 0.99635 1.23985 1.05184 0.90250 0.91921 1.18777 0.93914 0.94321 1.04725 0.88163 0.90957 0.90331 0.84594 0.82680 0.84583 0.84613 0.91841 0.90342 0.92404 0.91082 0.94714 0.93268 0.93680 0.93091 0.88609 0.89778 0.91365 0.78203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 9.38 36.00 0.34 -1.47 16 2 C 0.00 0.03 5.92 -104.22 -0.62 -0.58 16 3 C -0.20 -2.51 9.72 -39.78 -0.39 -2.89 16 4 C 0.14 1.79 11.14 -17.46 -0.19 1.60 16 5 N -0.49 -7.65 10.33 -10.92 -0.11 -7.76 16 6 C 0.15 2.43 6.61 -84.78 -0.56 1.87 16 7 C -0.11 -1.77 9.95 -39.54 -0.39 -2.17 16 8 C -0.05 -0.82 9.48 -39.59 -0.38 -1.20 16 9 C -0.13 -2.46 5.62 -104.98 -0.59 -3.05 16 10 C 0.56 11.19 7.49 -12.37 -0.09 11.10 16 11 O -0.55 -12.14 16.08 5.31 0.09 -12.05 16 12 N -0.58 -10.38 2.47 -178.12 -0.44 -10.82 16 13 C 0.13 2.12 5.66 -5.91 -0.03 2.09 16 14 C -0.17 -2.99 5.64 -29.13 -0.16 -3.15 16 15 C 0.16 3.08 5.63 -5.24 -0.03 3.05 16 16 N -0.59 -13.17 2.54 -172.34 -0.44 -13.60 16 17 C -0.25 -6.44 9.26 -15.06 -0.14 -6.58 16 18 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 19 C 0.01 0.16 4.87 -17.43 -0.08 0.08 16 20 N -0.91 -22.87 11.08 55.49 0.62 -22.26 16 21 Si 0.89 21.30 29.59 -169.99 -5.03 16.27 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.14 2.85 3.49 -2.01 -0.01 2.84 16 26 C 0.05 0.80 4.68 -4.84 -0.02 0.77 16 27 C -0.10 -1.71 6.49 -38.74 -0.25 -1.96 16 28 C -0.12 -1.96 5.74 -106.82 -0.61 -2.57 16 29 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 30 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.08 1.17 5.39 -51.93 -0.28 0.89 16 32 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 33 H 0.16 1.39 8.06 -52.48 -0.42 0.97 16 34 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.14 2.04 7.83 -52.49 -0.41 1.63 16 36 H 0.06 0.85 8.06 -51.93 -0.42 0.44 16 37 H 0.08 1.30 7.20 -51.93 -0.37 0.92 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.49 7.90 -51.93 -0.41 1.08 16 40 H 0.03 0.60 7.58 -51.93 -0.39 0.20 16 41 H 0.05 0.96 8.02 -51.93 -0.42 0.54 16 42 H 0.25 6.25 8.31 -40.82 -0.34 5.91 16 43 H 0.05 1.07 7.96 -51.93 -0.41 0.66 16 44 H 0.10 2.13 3.83 -51.93 -0.20 1.93 16 45 H 0.08 1.32 4.61 -51.93 -0.24 1.08 16 46 H 0.07 1.00 7.73 -51.93 -0.40 0.60 16 47 H 0.20 3.63 0.14 -52.54 -0.01 3.63 16 LS Contribution 361.19 15.07 5.44 5.44 Total: -1.00 -30.20 361.19 -10.14 -40.34 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.05 Total: 6.68 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -4.22 Total: -2.24 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.37 Total: -54.44 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.20 -10.14 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981243898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.020 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds