Wall clock time and date at job start Tue Mar 31 2020 22:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36619 * 120.92034 * 2 1 4 4 C 1.39267 * 119.90414 * 180.02562 * 3 2 1 5 5 N 1.31147 * 121.77088 * 359.96263 * 4 3 2 6 6 C 1.33616 * 121.39589 * 0.02562 * 5 4 3 7 7 C 1.40765 * 120.83685 * 180.28851 * 6 5 4 8 8 C 1.35696 * 120.11259 * 180.23151 * 7 6 5 9 9 C 1.40638 * 120.92342 * 359.50055 * 8 7 6 10 10 C 1.47761 * 119.80276 * 180.25576 * 9 8 7 11 11 O 1.21564 * 119.99887 * 25.98715 * 10 9 8 12 12 N 1.34779 * 120.00254 * 205.99226 * 10 9 8 13 13 C 1.48211 * 119.97314 * 173.84830 * 12 10 9 14 14 C 1.47145 * 110.34267 * 102.46439 * 13 12 10 15 15 C 1.53793 * 111.83976 * 58.29842 * 14 13 12 16 16 N 1.43466 * 107.96024 * 281.67060 * 15 14 13 17 17 C 1.36941 * 118.94153 * 273.62736 * 16 15 14 18 18 H 1.08005 * 119.99508 * 24.82339 * 17 16 15 19 19 C 1.38811 * 120.00216 * 204.81962 * 17 16 15 20 20 N 1.31618 * 119.99697 * 17.61419 * 19 17 16 21 21 Si 1.86794 * 120.00049 * 197.61393 * 19 17 16 22 22 H 1.48501 * 109.47094 * 90.00298 * 21 19 17 23 23 H 1.48507 * 109.47323 * 210.00086 * 21 19 17 24 24 H 1.48496 * 109.47233 * 330.00203 * 21 19 17 25 25 C 1.48858 * 122.12175 * 93.65324 * 16 15 14 26 26 C 1.43614 * 119.96945 * 353.57179 * 12 10 9 27 27 C 1.38550 * 120.39465 * 0.22982 * 9 8 7 28 28 C 1.40179 * 119.40225 * 0.02816 * 27 9 8 29 29 H 1.08996 * 109.47475 * 270.01343 * 1 2 3 30 30 H 1.08998 * 109.47203 * 30.01898 * 1 2 3 31 31 H 1.09003 * 109.46986 * 150.01407 * 1 2 3 32 32 H 1.07997 * 120.04286 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.11122 * 179.97438 * 4 3 2 34 34 H 1.07998 * 119.94547 * 0.02562 * 7 6 5 35 35 H 1.07996 * 119.53969 * 179.77468 * 8 7 6 36 36 H 1.08996 * 109.32811 * 222.72953 * 13 12 10 37 37 H 1.08998 * 109.32894 * 342.37456 * 13 12 10 38 38 H 1.09003 * 109.00491 * 178.90514 * 14 13 12 39 39 H 1.08998 * 109.00523 * 297.76649 * 14 13 12 40 40 H 1.08994 * 109.76698 * 41.28493 * 15 14 13 41 41 H 1.09001 * 109.76138 * 162.00677 * 15 14 13 42 42 H 0.97002 * 119.99798 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.48113 * 80.57655 * 25 16 15 44 44 H 1.08999 * 109.48367 * 200.61645 * 25 16 15 45 45 H 1.09001 * 108.87566 * 31.47227 * 26 12 10 46 46 H 1.08998 * 108.87428 * 149.90991 * 26 12 10 47 47 H 1.08002 * 120.29749 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6014 1.1473 -0.0005 5 7 4.2721 0.0203 -0.0003 6 6 3.6479 -1.1611 -0.0001 7 6 4.3795 -2.3637 0.0062 8 6 3.7305 -3.5554 0.0016 9 6 2.3253 -3.6131 0.0011 10 6 1.6441 -4.9243 0.0018 11 8 2.2035 -5.8996 0.4640 12 7 0.4026 -5.0391 -0.5102 13 6 -0.2264 -6.3753 -0.6344 14 6 -1.2088 -6.5803 0.4417 15 6 -2.3061 -5.5028 0.4276 16 7 -1.7661 -4.3137 1.0216 17 6 -1.8249 -4.1670 2.3818 18 1 -1.8837 -5.0386 3.0169 19 6 -1.8087 -2.8981 2.9444 20 7 -2.0842 -1.8460 2.2031 21 14 -1.3958 -2.6837 4.7535 22 1 0.0697 -2.5003 4.9084 23 1 -2.1028 -1.4906 5.2846 24 1 -1.8260 -3.8896 5.5057 25 6 -1.1446 -3.2340 0.2068 26 6 -0.3118 -3.8659 -0.9294 27 6 1.5759 -2.4478 0.0004 28 6 2.2308 -1.2084 -0.0002 29 1 -0.3634 0.0002 1.0276 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8901 -0.5136 32 1 1.6848 2.1163 -0.0004 33 1 4.1435 2.0815 -0.0010 34 1 5.4591 -2.3379 0.0114 35 1 4.3010 -4.4724 0.0028 36 1 -0.7278 -6.4497 -1.5994 37 1 0.5434 -7.1441 -0.5678 38 1 -1.6713 -7.5596 0.3184 39 1 -0.6946 -6.5492 1.4023 40 1 -2.6078 -5.2974 -0.5994 41 1 -3.1662 -5.8452 1.0030 42 1 -2.0733 -0.9593 2.5963 43 1 -1.9259 -2.6049 -0.2196 44 1 -0.4954 -2.6289 0.8397 45 1 0.4041 -3.1267 -1.2887 46 1 -0.9800 -4.1337 -1.7478 47 1 0.4968 -2.4939 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981243898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:55 Heat of formation + Delta-G solvation = 77.448928 kcal Electronic energy + Delta-G solvation = -31289.080137 eV Core-core repulsion = 27438.670803 eV Total energy + Delta-G solvation = -3850.409334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.38610 -41.11967 -38.80484 -37.83681 -36.12193 -35.81539 -34.47888 -32.93701 -31.72723 -31.18691 -29.67659 -28.76009 -27.30677 -25.55930 -25.39533 -24.73975 -23.51480 -22.10797 -21.51608 -20.69800 -19.52733 -18.53669 -18.31683 -17.88303 -17.30002 -17.13268 -16.54788 -16.35634 -16.10399 -15.75406 -15.59270 -15.24754 -15.11217 -14.54935 -14.52224 -14.36332 -14.09105 -13.91166 -13.89396 -13.75361 -13.38804 -13.18048 -13.11264 -12.99311 -12.78075 -12.67288 -12.41679 -12.36248 -12.17954 -12.08743 -11.70781 -11.62717 -11.45506 -11.13194 -10.95812 -10.50595 -10.39124 -9.88288 -9.59979 -9.20270 -8.64468 -7.87245 -5.25459 -0.79158 -0.33331 0.86101 1.36951 1.39136 1.43112 1.47203 2.03114 2.18779 2.48204 3.02806 3.23075 3.27424 3.41447 3.54517 3.61004 3.69677 3.85867 3.99621 4.06941 4.11465 4.15931 4.23068 4.31262 4.44044 4.50587 4.52996 4.54076 4.60761 4.76669 4.79690 4.81283 4.86385 4.88697 4.93491 5.02646 5.03820 5.16168 5.24656 5.25437 5.27457 5.36522 5.47764 5.50029 5.55345 5.69334 5.73679 5.80020 6.38248 6.42033 6.88417 7.08923 7.18825 7.93538 8.31586 9.17245 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009862 B = 0.005882 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.444989 B = 4759.246043 C = 6224.642101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.017 4.017 3 C -0.183 4.183 4 C 0.146 3.854 5 N -0.509 5.509 6 C 0.128 3.872 7 C -0.109 4.109 8 C -0.060 4.060 9 C -0.156 4.156 10 C 0.554 3.446 11 O -0.583 6.583 12 N -0.576 5.576 13 C 0.126 3.874 14 C -0.158 4.158 15 C 0.158 3.842 16 N -0.600 5.600 17 C -0.261 4.261 18 H 0.047 0.953 19 C -0.026 4.026 20 N -0.906 5.906 21 Si 0.930 3.070 22 H -0.302 1.302 23 H -0.285 1.285 24 H -0.281 1.281 25 C 0.148 3.852 26 C 0.054 3.946 27 C -0.103 4.103 28 C -0.134 4.134 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.174 0.826 33 H 0.200 0.800 34 H 0.158 0.842 35 H 0.142 0.858 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.025 0.975 40 H 0.062 0.938 41 H 0.039 0.961 42 H 0.253 0.747 43 H 0.043 0.957 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.341 4.908 -11.254 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.025 4.025 3 C -0.202 4.202 4 C -0.025 4.025 5 N -0.218 5.218 6 C 0.007 3.993 7 C -0.127 4.127 8 C -0.080 4.080 9 C -0.159 4.159 10 C 0.344 3.656 11 O -0.465 6.465 12 N -0.305 5.305 13 C 0.006 3.994 14 C -0.199 4.199 15 C 0.031 3.969 16 N -0.322 5.322 17 C -0.392 4.392 18 H 0.065 0.935 19 C -0.223 4.223 20 N -0.552 5.552 21 Si 0.761 3.239 22 H -0.230 1.230 23 H -0.211 1.211 24 H -0.206 1.206 25 C 0.023 3.977 26 C -0.070 4.070 27 C -0.120 4.120 28 C -0.136 4.136 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.192 0.808 33 H 0.216 0.784 34 H 0.176 0.824 35 H 0.160 0.840 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 6.475 4.429 -11.019 13.527 hybrid contribution -0.685 -0.075 1.709 1.843 sum 5.791 4.353 -9.310 11.797 Atomic orbital electron populations 1.20979 0.88410 1.04428 1.03718 1.20629 0.97697 0.92102 0.92072 1.22160 0.95602 0.99436 1.03045 1.23698 0.92094 0.96964 0.89756 1.68097 1.40378 0.98028 1.15328 1.19245 0.89867 0.93383 0.96769 1.20811 1.01148 0.89244 1.01522 1.20910 0.92208 0.99095 0.95806 1.20000 0.95154 0.92905 1.07828 1.18523 0.81814 0.88111 0.77107 1.90669 1.67555 1.40531 1.47751 1.47361 1.13720 1.08730 1.60691 1.20784 0.95862 0.82805 0.99990 1.21712 0.98706 1.01161 0.98291 1.20475 0.93293 0.86059 0.97119 1.43760 1.66852 1.18849 1.02780 1.19219 1.44732 0.91360 0.83843 0.93481 1.25228 1.01340 0.96427 0.99334 1.70053 1.51918 0.97781 1.35423 0.85842 0.77066 0.77245 0.83755 1.23002 1.21104 1.20640 1.22145 0.94401 0.89957 0.91203 1.22736 0.96969 0.88515 0.98820 1.23946 1.04982 0.90712 0.92405 1.18982 0.94486 0.94741 1.05410 0.90792 0.87945 0.91422 0.80827 0.78368 0.82447 0.83986 0.87761 0.90804 0.89225 0.95604 0.91940 0.94227 0.93760 0.93923 0.90717 0.88573 0.88267 0.78630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.30 9.38 71.24 0.67 -2.63 16 2 C -0.02 -0.49 5.92 -19.60 -0.12 -0.60 16 3 C -0.18 -3.99 9.72 22.14 0.22 -3.77 16 4 C 0.15 3.20 11.14 85.04 0.95 4.14 16 5 N -0.51 -14.71 10.33 -188.46 -1.95 -16.66 16 6 C 0.13 4.18 6.61 40.37 0.27 4.45 16 7 C -0.11 -3.34 9.95 22.30 0.22 -3.12 16 8 C -0.06 -1.99 9.48 22.27 0.21 -1.78 16 9 C -0.16 -5.86 5.62 -20.10 -0.11 -5.97 16 10 C 0.55 22.51 7.49 86.76 0.65 23.16 16 11 O -0.58 -26.70 16.08 -3.92 -0.06 -26.76 16 12 N -0.58 -20.50 2.47 -835.72 -2.06 -22.56 16 13 C 0.13 3.91 5.66 84.23 0.48 4.38 16 14 C -0.16 -5.38 5.64 29.04 0.16 -5.21 16 15 C 0.16 5.85 5.63 87.21 0.49 6.34 16 16 N -0.60 -27.16 2.54 -699.15 -1.77 -28.94 16 17 C -0.26 -13.76 9.26 84.03 0.78 -12.98 16 18 H 0.05 2.60 7.89 -2.91 -0.02 2.58 16 19 C -0.03 -1.36 4.87 84.86 0.41 -0.95 16 20 N -0.91 -46.26 11.08 21.65 0.24 -46.02 16 21 Si 0.93 44.62 29.59 68.60 2.03 46.65 16 22 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 25 C 0.15 5.98 3.49 86.40 0.30 6.28 16 26 C 0.05 1.76 4.68 87.39 0.41 2.17 16 27 C -0.10 -3.72 6.49 22.82 0.15 -3.58 16 28 C -0.13 -4.51 5.74 -21.29 -0.12 -4.63 16 29 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.10 2.11 8.10 -2.39 -0.02 2.09 16 31 H 0.07 2.00 5.39 -2.39 -0.01 1.98 16 32 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.20 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 35 H 0.14 4.40 7.83 -2.91 -0.02 4.38 16 36 H 0.10 2.42 8.06 -2.39 -0.02 2.40 16 37 H 0.07 2.39 7.20 -2.39 -0.02 2.37 16 38 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.03 1.10 7.90 -2.39 -0.02 1.08 16 40 H 0.06 1.98 7.58 -2.39 -0.02 1.96 16 41 H 0.04 1.53 8.02 -2.39 -0.02 1.51 16 42 H 0.25 12.58 8.31 -92.71 -0.77 11.80 16 43 H 0.04 1.78 7.96 -2.39 -0.02 1.76 16 44 H 0.08 3.39 3.83 -2.39 -0.01 3.38 16 45 H 0.10 2.96 4.61 -2.39 -0.01 2.95 16 46 H 0.10 2.61 7.73 -2.39 -0.02 2.59 16 47 H 0.20 7.21 0.14 -2.96 0.00 7.21 16 Total: -1.00 -67.99 361.19 3.45 -64.54 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 1.01 Total: 24.05 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 6.01 Total: 5.70 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -5.54 Total: -114.18 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.06 Total: -26.76 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -67.99 3.45 -64.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981243898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.993 kcal (2) G-P(sol) polarization free energy of solvation -67.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds