Wall clock time and date at job start Tue Mar 31 2020 22:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30825 * 119.22745 * 2 1 4 4 C 1.33793 * 121.71931 * 179.97438 * 3 2 1 5 5 C 1.40530 * 120.83036 * 179.97438 * 4 3 2 6 6 C 1.36128 * 119.81752 * 180.02562 * 5 4 3 7 7 C 1.39340 * 121.09432 * 359.97232 * 6 5 4 8 8 C 1.36145 * 120.83769 * 0.04866 * 7 6 5 9 9 C 1.40553 * 119.61628 * 359.70318 * 8 7 6 10 10 C 1.40491 * 121.22129 * 179.72883 * 9 8 7 11 11 C 1.39038 * 117.96335 * 180.29428 * 10 9 8 12 12 C 1.47757 * 120.26923 * 180.27216 * 11 10 9 13 13 O 1.21568 * 120.00359 * 122.79005 * 12 11 10 14 14 N 1.34774 * 119.99841 * 302.78342 * 12 11 10 15 15 C 1.48213 * 119.97272 * 4.42713 * 14 12 11 16 16 C 1.47146 * 110.34477 * 102.46197 * 15 14 12 17 17 C 1.53788 * 111.84102 * 58.29609 * 16 15 14 18 18 N 1.43466 * 107.96369 * 281.67176 * 17 16 15 19 19 C 1.36932 * 118.94279 * 273.62962 * 18 17 16 20 20 H 1.07996 * 120.00441 * 140.07049 * 19 18 17 21 21 C 1.38813 * 119.99915 * 320.07319 * 19 18 17 22 22 N 1.31616 * 120.00241 * 162.08364 * 21 19 18 23 23 Si 1.86799 * 119.99823 * 342.07885 * 21 19 18 24 24 H 1.48501 * 109.46908 * 95.77778 * 23 21 19 25 25 H 1.48507 * 109.47046 * 215.77173 * 23 21 19 26 26 H 1.48500 * 109.47285 * 335.77273 * 23 21 19 27 27 C 1.48865 * 122.11908 * 93.65460 * 18 17 16 28 28 C 1.43626 * 119.97254 * 184.14523 * 14 12 11 29 29 H 1.09007 * 109.46647 * 272.46511 * 1 2 3 30 30 H 1.08995 * 109.47448 * 32.46021 * 1 2 3 31 31 H 1.09002 * 109.47038 * 152.46483 * 1 2 3 32 32 H 1.08004 * 120.08673 * 0.03660 * 5 4 3 33 33 H 1.07994 * 119.45126 * 179.97438 * 6 5 4 34 34 H 1.08004 * 119.58222 * 180.02562 * 7 6 5 35 35 H 1.07999 * 120.18876 * 179.97438 * 8 7 6 36 36 H 1.07997 * 121.01477 * 0.56234 * 10 9 8 37 37 H 1.08996 * 109.32459 * 222.72510 * 15 14 12 38 38 H 1.08996 * 109.32397 * 342.36961 * 15 14 12 39 39 H 1.09004 * 109.00619 * 178.90697 * 16 15 14 40 40 H 1.09007 * 109.00349 * 297.76417 * 16 15 14 41 41 H 1.09001 * 109.76595 * 41.29135 * 17 16 15 42 42 H 1.08997 * 109.76406 * 162.00523 * 17 16 15 43 43 H 0.97001 * 120.00569 * 179.97438 * 22 21 19 44 44 H 1.09003 * 109.48237 * 80.57782 * 27 18 17 45 45 H 1.09001 * 109.48062 * 200.61478 * 27 18 17 46 46 H 1.09003 * 108.87208 * 31.47243 * 28 14 12 47 47 H 1.08996 * 108.87161 * 149.91161 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4824 1.1999 0.0005 5 6 4.1495 2.4367 0.0000 6 6 5.5103 2.4719 0.0000 7 6 6.2605 1.2977 0.0011 8 6 5.6511 0.0802 0.0012 9 6 4.2476 0.0060 0.0065 10 6 3.5838 -1.2322 0.0012 11 6 2.1934 -1.2266 0.0006 12 6 1.4435 -2.4997 0.0011 13 8 0.6434 -2.7336 0.8860 14 7 1.6464 -3.4017 -0.9795 15 6 2.6911 -3.1605 -2.0028 16 6 3.8851 -3.9712 -1.7159 17 6 3.5595 -5.4735 -1.6717 18 7 2.9495 -5.7570 -0.4044 19 6 3.7519 -6.0346 0.6699 20 1 3.5040 -5.6418 1.6449 21 6 4.8840 -6.8210 0.5058 22 7 5.8335 -6.8059 1.4171 23 14 5.0598 -7.9007 -1.0083 24 1 5.8601 -7.1865 -2.0353 25 1 5.7450 -9.1651 -0.6379 26 1 3.7141 -8.2089 -1.5554 27 6 1.4724 -5.7596 -0.2200 28 6 0.8541 -4.5987 -1.0286 29 1 -0.3633 0.0442 1.0268 30 1 -0.3634 0.8670 -0.5515 31 1 -0.3633 -0.9113 -0.4751 32 1 3.5840 3.3569 -0.0003 33 1 6.0169 3.4257 -0.0009 34 1 7.3391 1.3540 0.0015 35 1 6.2428 -0.8233 0.0017 36 1 4.1366 -2.1600 0.0019 37 1 2.3019 -3.4270 -2.9854 38 1 2.9647 -2.1055 -1.9972 39 1 4.6304 -3.7921 -2.4908 40 1 4.2957 -3.6695 -0.7522 41 1 2.8697 -5.7251 -2.4773 42 1 4.4768 -6.0527 -1.7778 43 1 6.6245 -7.3556 1.3027 44 1 1.0638 -6.7072 -0.5711 45 1 1.2378 -5.6316 0.8368 46 1 -0.1358 -4.3830 -0.6265 47 1 0.7503 -4.9104 -2.0679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981273603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:35 Heat of formation + Delta-G solvation = 62.445061 kcal Electronic energy + Delta-G solvation = -30524.011341 eV Core-core repulsion = 26672.951391 eV Total energy + Delta-G solvation = -3851.059950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.18560 -39.74287 -37.60398 -36.89700 -34.68135 -33.64182 -32.33783 -32.00379 -31.63186 -30.29473 -28.18385 -27.70365 -25.82695 -24.83910 -23.47605 -22.74713 -22.47217 -21.88561 -20.30574 -19.34058 -18.01399 -17.43496 -16.79121 -16.62540 -16.36076 -15.75224 -15.36777 -14.99382 -14.71093 -14.60131 -14.47359 -13.81410 -13.79002 -13.58226 -13.29914 -13.24041 -13.06439 -12.98885 -12.68262 -12.42616 -12.25200 -12.10754 -11.84744 -11.72733 -11.56461 -11.42106 -11.25010 -11.03833 -10.67066 -10.55983 -10.47668 -10.26270 -9.90917 -9.83400 -9.59810 -9.35919 -8.72614 -8.59484 -8.33141 -8.29919 -6.81598 -6.01701 -3.48308 0.24317 0.62152 1.86188 2.59255 3.04249 3.23256 3.25751 3.41269 3.44958 3.98178 4.06946 4.41554 4.45866 4.53861 4.64586 4.73513 4.90335 4.96140 5.05868 5.07990 5.12825 5.27029 5.29270 5.42979 5.50368 5.56230 5.62160 5.67159 5.69110 5.76698 5.79686 5.82960 5.93535 5.99381 6.02603 6.08994 6.17564 6.19346 6.22311 6.31938 6.43517 6.49646 6.56506 6.68714 6.72166 6.81733 7.02217 7.59255 7.84343 8.07340 8.34999 8.41338 8.99954 9.67666 10.05214 11.13743 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012646 B = 0.004309 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.595391 B = 6496.305490 C = 7939.000073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.201 3.799 3 N -0.483 5.483 4 C 0.143 3.857 5 C -0.103 4.103 6 C -0.093 4.093 7 C -0.127 4.127 8 C -0.080 4.080 9 C -0.113 4.113 10 C -0.015 4.015 11 C -0.174 4.174 12 C 0.569 3.431 13 O -0.530 6.530 14 N -0.578 5.578 15 C 0.117 3.883 16 C -0.174 4.174 17 C 0.154 3.846 18 N -0.604 5.604 19 C -0.268 4.268 20 H 0.076 0.924 21 C 0.035 3.965 22 N -0.904 5.904 23 Si 0.887 3.113 24 H -0.287 1.287 25 H -0.303 1.303 26 H -0.271 1.271 27 C 0.129 3.871 28 C 0.102 3.898 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.039 0.961 42 H 0.049 0.951 43 H 0.263 0.737 44 H 0.034 0.966 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 15.808 -8.774 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.047 3.953 3 N -0.192 5.192 4 C 0.022 3.978 5 C -0.122 4.122 6 C -0.113 4.113 7 C -0.145 4.145 8 C -0.098 4.098 9 C -0.115 4.115 10 C -0.041 4.041 11 C -0.179 4.179 12 C 0.356 3.644 13 O -0.407 6.407 14 N -0.308 5.308 15 C -0.005 4.005 16 C -0.214 4.214 17 C 0.027 3.973 18 N -0.328 5.328 19 C -0.397 4.397 20 H 0.093 0.907 21 C -0.165 4.165 22 N -0.545 5.545 23 Si 0.718 3.282 24 H -0.215 1.215 25 H -0.231 1.231 26 H -0.196 1.196 27 C 0.003 3.997 28 C -0.023 4.023 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.174 0.826 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.560 16.436 -8.263 18.953 hybrid contribution 1.069 -1.576 -0.749 2.046 sum -3.491 14.861 -9.012 17.727 Atomic orbital electron populations 1.20794 0.88051 1.03247 1.04015 1.21384 0.97080 0.86454 0.90339 1.67798 1.08361 1.27904 1.15138 1.18940 0.89041 0.93001 0.96826 1.20753 0.94168 0.96231 1.01038 1.20936 0.93683 0.98714 0.97986 1.20914 1.00425 0.92215 1.00983 1.21158 0.92600 0.98934 0.97153 1.18801 0.94997 0.93510 1.04236 1.22374 0.93189 0.98451 0.90063 1.20784 0.94536 0.95154 1.07420 1.17904 0.82075 0.82846 0.81575 1.90779 1.36464 1.78486 1.35013 1.47318 1.36417 1.19480 1.27630 1.20885 0.88858 1.00090 0.90661 1.21913 0.96740 1.00170 1.02600 1.20611 0.96503 0.91969 0.88211 1.43910 1.00411 1.81421 1.07024 1.18819 1.04598 1.26299 0.89964 0.90671 1.25512 0.96952 0.97227 0.96843 1.69822 1.07818 1.40998 1.35909 0.86782 0.77733 0.80401 0.83248 1.21548 1.23148 1.19622 1.22059 0.84396 0.93921 0.99330 1.21560 0.94665 0.85447 1.00604 0.89383 0.90344 0.90552 0.84811 0.85363 0.85385 0.84674 0.82551 0.91209 0.90875 0.91946 0.90341 0.94311 0.93333 0.92736 0.94820 0.91714 0.90422 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 9.40 36.00 0.34 -0.97 16 2 C 0.20 3.01 6.82 -82.15 -0.56 2.45 16 3 N -0.48 -7.23 10.20 -6.93 -0.07 -7.30 16 4 C 0.14 2.03 6.61 -84.79 -0.56 1.47 16 5 C -0.10 -1.17 9.97 -39.48 -0.39 -1.57 16 6 C -0.09 -0.88 9.94 -39.93 -0.40 -1.28 16 7 C -0.13 -1.26 9.96 -39.92 -0.40 -1.66 16 8 C -0.08 -0.95 9.77 -39.46 -0.39 -1.34 16 9 C -0.11 -1.61 5.74 -106.81 -0.61 -2.22 16 10 C -0.01 -0.23 7.55 -38.44 -0.29 -0.52 16 11 C -0.17 -2.79 4.66 -104.83 -0.49 -3.28 16 12 C 0.57 10.04 5.92 -12.37 -0.07 9.96 16 13 O -0.53 -10.78 15.79 5.31 0.08 -10.70 16 14 N -0.58 -9.37 2.47 -178.11 -0.44 -9.81 16 15 C 0.12 1.65 5.09 -5.91 -0.03 1.62 16 16 C -0.17 -2.89 5.44 -29.13 -0.16 -3.05 16 17 C 0.15 3.06 4.50 -5.24 -0.02 3.04 16 18 N -0.60 -13.62 2.11 -172.29 -0.36 -13.98 16 19 C -0.27 -7.28 9.58 -15.06 -0.14 -7.43 16 20 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 21 C 0.03 0.97 5.35 -17.43 -0.09 0.88 16 22 N -0.90 -27.00 13.97 55.49 0.78 -26.23 16 23 Si 0.89 21.68 24.82 -169.99 -4.22 17.46 16 24 H -0.29 -6.74 6.78 56.52 0.38 -6.35 16 25 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 26 H -0.27 -6.49 7.09 56.52 0.40 -6.09 16 27 C 0.13 2.51 6.84 -2.00 -0.01 2.50 16 28 C 0.10 1.63 5.18 -4.83 -0.03 1.60 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.97 6.73 -51.93 -0.35 0.62 16 32 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 35 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.16 2.53 5.22 -52.49 -0.27 2.26 16 37 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 38 H 0.07 0.96 5.40 -51.93 -0.28 0.68 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.51 5.54 -51.93 -0.29 1.22 16 41 H 0.04 0.68 7.58 -51.93 -0.39 0.29 16 42 H 0.05 1.08 2.96 -51.93 -0.15 0.93 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 1.39 7.97 -51.93 -0.41 0.98 16 46 H 0.08 1.19 7.43 -51.93 -0.39 0.81 16 47 H 0.07 0.90 7.73 -51.93 -0.40 0.50 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -32.82 364.45 -9.37 -42.19 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -6.32 Total: 2.65 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -4.31 Total: 0.22 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.10 Total: -57.32 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.22 Total: 17.46 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.82 -9.37 -42.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981273603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.632 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds