Wall clock time and date at job start Tue Mar 31 2020 22:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30825 * 119.22745 * 2 1 4 4 C 1.33793 * 121.71931 * 179.97438 * 3 2 1 5 5 C 1.40530 * 120.83036 * 179.97438 * 4 3 2 6 6 C 1.36128 * 119.81752 * 180.02562 * 5 4 3 7 7 C 1.39340 * 121.09432 * 359.97232 * 6 5 4 8 8 C 1.36145 * 120.83769 * 0.04866 * 7 6 5 9 9 C 1.40553 * 119.61628 * 359.70318 * 8 7 6 10 10 C 1.40491 * 121.22129 * 179.72883 * 9 8 7 11 11 C 1.39038 * 117.96335 * 180.29428 * 10 9 8 12 12 C 1.47757 * 120.26923 * 180.27216 * 11 10 9 13 13 O 1.21568 * 120.00359 * 122.79005 * 12 11 10 14 14 N 1.34774 * 119.99841 * 302.78342 * 12 11 10 15 15 C 1.48213 * 119.97272 * 4.42713 * 14 12 11 16 16 C 1.47146 * 110.34477 * 102.46197 * 15 14 12 17 17 C 1.53788 * 111.84102 * 58.29609 * 16 15 14 18 18 N 1.43466 * 107.96369 * 281.67176 * 17 16 15 19 19 C 1.36932 * 118.94279 * 273.62962 * 18 17 16 20 20 H 1.07996 * 120.00441 * 140.07049 * 19 18 17 21 21 C 1.38813 * 119.99915 * 320.07319 * 19 18 17 22 22 N 1.31616 * 120.00241 * 162.08364 * 21 19 18 23 23 Si 1.86799 * 119.99823 * 342.07885 * 21 19 18 24 24 H 1.48501 * 109.46908 * 95.77778 * 23 21 19 25 25 H 1.48507 * 109.47046 * 215.77173 * 23 21 19 26 26 H 1.48500 * 109.47285 * 335.77273 * 23 21 19 27 27 C 1.48865 * 122.11908 * 93.65460 * 18 17 16 28 28 C 1.43626 * 119.97254 * 184.14523 * 14 12 11 29 29 H 1.09007 * 109.46647 * 272.46511 * 1 2 3 30 30 H 1.08995 * 109.47448 * 32.46021 * 1 2 3 31 31 H 1.09002 * 109.47038 * 152.46483 * 1 2 3 32 32 H 1.08004 * 120.08673 * 0.03660 * 5 4 3 33 33 H 1.07994 * 119.45126 * 179.97438 * 6 5 4 34 34 H 1.08004 * 119.58222 * 180.02562 * 7 6 5 35 35 H 1.07999 * 120.18876 * 179.97438 * 8 7 6 36 36 H 1.07997 * 121.01477 * 0.56234 * 10 9 8 37 37 H 1.08996 * 109.32459 * 222.72510 * 15 14 12 38 38 H 1.08996 * 109.32397 * 342.36961 * 15 14 12 39 39 H 1.09004 * 109.00619 * 178.90697 * 16 15 14 40 40 H 1.09007 * 109.00349 * 297.76417 * 16 15 14 41 41 H 1.09001 * 109.76595 * 41.29135 * 17 16 15 42 42 H 1.08997 * 109.76406 * 162.00523 * 17 16 15 43 43 H 0.97001 * 120.00569 * 179.97438 * 22 21 19 44 44 H 1.09003 * 109.48237 * 80.57782 * 27 18 17 45 45 H 1.09001 * 109.48062 * 200.61478 * 27 18 17 46 46 H 1.09003 * 108.87208 * 31.47243 * 28 14 12 47 47 H 1.08996 * 108.87161 * 149.91161 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4824 1.1999 0.0005 5 6 4.1495 2.4367 0.0000 6 6 5.5103 2.4719 0.0000 7 6 6.2605 1.2977 0.0011 8 6 5.6511 0.0802 0.0012 9 6 4.2476 0.0060 0.0065 10 6 3.5838 -1.2322 0.0012 11 6 2.1934 -1.2266 0.0006 12 6 1.4435 -2.4997 0.0011 13 8 0.6434 -2.7336 0.8860 14 7 1.6464 -3.4017 -0.9795 15 6 2.6911 -3.1605 -2.0028 16 6 3.8851 -3.9712 -1.7159 17 6 3.5595 -5.4735 -1.6717 18 7 2.9495 -5.7570 -0.4044 19 6 3.7519 -6.0346 0.6699 20 1 3.5040 -5.6418 1.6449 21 6 4.8840 -6.8210 0.5058 22 7 5.8335 -6.8059 1.4171 23 14 5.0598 -7.9007 -1.0083 24 1 5.8601 -7.1865 -2.0353 25 1 5.7450 -9.1651 -0.6379 26 1 3.7141 -8.2089 -1.5554 27 6 1.4724 -5.7596 -0.2200 28 6 0.8541 -4.5987 -1.0286 29 1 -0.3633 0.0442 1.0268 30 1 -0.3634 0.8670 -0.5515 31 1 -0.3633 -0.9113 -0.4751 32 1 3.5840 3.3569 -0.0003 33 1 6.0169 3.4257 -0.0009 34 1 7.3391 1.3540 0.0015 35 1 6.2428 -0.8233 0.0017 36 1 4.1366 -2.1600 0.0019 37 1 2.3019 -3.4270 -2.9854 38 1 2.9647 -2.1055 -1.9972 39 1 4.6304 -3.7921 -2.4908 40 1 4.2957 -3.6695 -0.7522 41 1 2.8697 -5.7251 -2.4773 42 1 4.4768 -6.0527 -1.7778 43 1 6.6245 -7.3556 1.3027 44 1 1.0638 -6.7072 -0.5711 45 1 1.2378 -5.6316 0.8368 46 1 -0.1358 -4.3830 -0.6265 47 1 0.7503 -4.9104 -2.0679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981273603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:34 Heat of formation + Delta-G solvation = 42.226261 kcal Electronic energy + Delta-G solvation = -30524.888094 eV Core-core repulsion = 26672.951391 eV Total energy + Delta-G solvation = -3851.936703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.30838 -40.97824 -38.96510 -38.05432 -36.26779 -34.80538 -33.71285 -33.59993 -33.00773 -31.35809 -29.59191 -28.80820 -27.35357 -26.16116 -25.08728 -23.93887 -23.52713 -22.97173 -21.89890 -20.61049 -19.10619 -18.71841 -18.54823 -17.97819 -17.57823 -17.18755 -16.79547 -16.30142 -15.85351 -15.73005 -15.54349 -15.34521 -15.18554 -14.91058 -14.75669 -14.55190 -14.30778 -14.05925 -14.03054 -13.80129 -13.73926 -13.42168 -13.14725 -12.83356 -12.75986 -12.65327 -12.44987 -12.36311 -12.28339 -12.06723 -11.98919 -11.66657 -11.53403 -11.45976 -11.12935 -10.64652 -10.56282 -9.78341 -9.66549 -9.27194 -8.69463 -8.18785 -5.62698 -0.79357 -0.40471 0.84872 1.29038 1.42183 1.43448 1.53124 1.89487 2.02065 2.40296 2.97450 3.06024 3.10143 3.26745 3.35422 3.50558 3.55784 3.82626 3.87695 3.91052 4.13258 4.19046 4.20586 4.30441 4.34692 4.36123 4.41390 4.53755 4.62734 4.63993 4.67781 4.70852 4.77667 4.79465 4.88861 4.89638 5.00622 5.01590 5.04450 5.05934 5.12341 5.34969 5.40888 5.44786 5.47134 5.68781 5.84760 5.96700 6.13652 6.29741 6.75417 7.03790 7.07276 7.65004 8.01728 9.01330 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012646 B = 0.004309 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.595391 B = 6496.305490 C = 7939.000073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.188 3.812 3 N -0.488 5.488 4 C 0.124 3.876 5 C -0.114 4.114 6 C -0.077 4.077 7 C -0.113 4.113 8 C -0.101 4.101 9 C -0.126 4.126 10 C -0.020 4.020 11 C -0.190 4.190 12 C 0.566 3.434 13 O -0.569 6.569 14 N -0.578 5.578 15 C 0.118 3.882 16 C -0.164 4.164 17 C 0.144 3.856 18 N -0.613 5.613 19 C -0.256 4.256 20 H 0.017 0.983 21 C -0.021 4.021 22 N -0.956 5.956 23 Si 0.962 3.038 24 H -0.267 1.267 25 H -0.315 1.315 26 H -0.257 1.257 27 C 0.127 3.873 28 C 0.107 3.893 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.029 0.971 43 H 0.262 0.738 44 H 0.052 0.948 45 H 0.027 0.973 46 H 0.082 0.918 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.375 17.710 -12.330 21.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.035 3.965 3 N -0.197 5.197 4 C 0.002 3.998 5 C -0.132 4.132 6 C -0.096 4.096 7 C -0.131 4.131 8 C -0.119 4.119 9 C -0.128 4.128 10 C -0.046 4.046 11 C -0.195 4.195 12 C 0.354 3.646 13 O -0.449 6.449 14 N -0.308 5.308 15 C -0.003 4.003 16 C -0.205 4.205 17 C 0.018 3.982 18 N -0.337 5.337 19 C -0.386 4.386 20 H 0.035 0.965 21 C -0.217 4.217 22 N -0.600 5.600 23 Si 0.790 3.210 24 H -0.194 1.194 25 H -0.245 1.245 26 H -0.181 1.181 27 C 0.002 3.998 28 C -0.017 4.017 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.168 0.832 33 H 0.187 0.813 34 H 0.178 0.822 35 H 0.154 0.846 36 H 0.158 0.842 37 H 0.127 0.873 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.046 0.954 46 H 0.100 0.900 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.094 18.360 -11.876 22.246 hybrid contribution 1.026 -2.014 0.463 2.307 sum -3.068 16.346 -11.413 20.171 Atomic orbital electron populations 1.20772 0.86764 1.03919 1.03984 1.21627 0.98009 0.86126 0.90738 1.67836 1.08996 1.27655 1.15252 1.19387 0.88965 0.94138 0.97284 1.21051 0.95248 0.95658 1.01281 1.21414 0.92933 1.00246 0.95030 1.21360 1.02170 0.91377 0.98146 1.21309 0.91750 1.00315 0.98572 1.18950 0.96099 0.92969 1.04774 1.22263 0.93043 0.98586 0.90705 1.20713 0.94671 0.94881 1.09241 1.18236 0.81573 0.83588 0.81209 1.90745 1.38300 1.79410 1.36483 1.47481 1.36624 1.19099 1.27566 1.21029 0.87401 1.00342 0.91495 1.21782 0.98598 0.98255 1.01838 1.20805 0.96254 0.93558 0.87546 1.43968 1.01192 1.81803 1.06757 1.18509 1.05206 1.25404 0.89512 0.96532 1.26163 0.96443 0.98539 1.00548 1.69983 1.08736 1.42422 1.38879 0.85586 0.78362 0.77438 0.79577 1.19367 1.24468 1.18076 1.22125 0.82933 0.96584 0.98190 1.21537 0.94215 0.83926 1.02073 0.89851 0.88309 0.90972 0.83171 0.81303 0.82178 0.84558 0.84197 0.87301 0.89910 0.89007 0.93908 0.90615 0.95360 0.92866 0.93033 0.95427 0.89992 0.87566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.46 9.40 71.24 0.67 -1.79 16 2 C 0.19 5.73 6.82 43.28 0.30 6.02 16 3 N -0.49 -14.47 10.20 -175.85 -1.79 -16.26 16 4 C 0.12 3.41 6.61 40.29 0.27 3.67 16 5 C -0.11 -2.31 9.97 22.34 0.22 -2.09 16 6 C -0.08 -1.15 9.94 22.04 0.22 -0.93 16 7 C -0.11 -1.88 9.96 22.05 0.22 -1.66 16 8 C -0.10 -2.32 9.77 22.35 0.22 -2.10 16 9 C -0.13 -3.58 5.74 -21.28 -0.12 -3.70 16 10 C -0.02 -0.64 7.55 23.01 0.17 -0.47 16 11 C -0.19 -6.30 4.66 -20.00 -0.09 -6.39 16 12 C 0.57 20.60 5.92 86.76 0.51 21.11 16 13 O -0.57 -24.38 15.79 -3.93 -0.06 -24.45 16 14 N -0.58 -18.34 2.47 -835.70 -2.06 -20.40 16 15 C 0.12 3.07 5.09 84.23 0.43 3.50 16 16 C -0.16 -5.21 5.44 29.04 0.16 -5.05 16 17 C 0.14 5.39 4.50 87.21 0.39 5.79 16 18 N -0.61 -27.74 2.11 -699.01 -1.47 -29.22 16 19 C -0.26 -14.64 9.58 84.03 0.80 -13.83 16 20 H 0.02 1.13 8.06 -2.91 -0.02 1.11 16 21 C -0.02 -1.22 5.35 84.86 0.45 -0.76 16 22 N -0.96 -59.81 13.97 21.65 0.30 -59.50 16 23 Si 0.96 45.15 24.82 68.60 1.70 46.86 16 24 H -0.27 -11.55 6.78 99.48 0.67 -10.88 16 25 H -0.32 -15.32 7.11 99.48 0.71 -14.62 16 26 H -0.26 -11.32 7.09 99.48 0.71 -10.62 16 27 C 0.13 4.97 6.84 86.40 0.59 5.56 16 28 C 0.11 3.24 5.18 87.39 0.45 3.70 16 29 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 1.86 6.73 -2.39 -0.02 1.84 16 32 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 34 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.14 4.88 5.22 -2.91 -0.02 4.87 16 37 H 0.11 2.06 8.06 -2.39 -0.02 2.04 16 38 H 0.08 2.05 5.40 -2.39 -0.01 2.04 16 39 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 40 H 0.04 1.68 5.54 -2.38 -0.01 1.67 16 41 H 0.08 2.30 7.58 -2.39 -0.02 2.28 16 42 H 0.03 1.19 2.96 -2.39 -0.01 1.19 16 43 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.03 1.25 7.97 -2.39 -0.02 1.23 16 46 H 0.08 2.45 7.43 -2.39 -0.02 2.43 16 47 H 0.11 2.41 7.73 -2.39 -0.02 2.40 16 Total: -1.00 -77.54 364.45 3.44 -74.10 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.96 Total: 18.30 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 5.86 Total: 10.58 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -5.03 Total: -125.39 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.06 Total: -24.45 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.70 Total: 46.86 kcal Total: -77.54 3.44 -74.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981273603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.324 kcal (2) G-P(sol) polarization free energy of solvation -77.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds