Wall clock time and date at job start Tue Mar 31 2020 22:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39227 * 119.15344 * 2 1 4 4 C 1.36636 * 119.90100 * 180.02562 * 3 2 1 5 5 C 1.40804 * 118.15720 * 359.97438 * 4 3 2 6 6 C 1.40473 * 121.25192 * 180.02562 * 5 4 3 7 7 C 1.36312 * 120.08382 * 180.02562 * 6 5 4 8 8 C 1.38919 * 121.05542 * 359.67980 * 7 6 5 9 9 C 1.38709 * 120.72400 * 0.62893 * 8 7 6 10 10 C 1.47436 * 120.33048 * 179.67623 * 9 8 7 11 11 O 1.21605 * 119.99919 * 204.32844 * 10 9 8 12 12 N 1.34777 * 119.99838 * 24.33321 * 10 9 8 13 13 C 1.48209 * 119.96472 * 171.65747 * 12 10 9 14 14 C 1.47145 * 110.34280 * 102.46803 * 13 12 10 15 15 C 1.53802 * 111.83996 * 58.29320 * 14 13 12 16 16 N 1.43462 * 107.95865 * 281.66956 * 15 14 13 17 17 C 1.36940 * 118.93745 * 273.60736 * 16 15 14 18 18 H 1.08004 * 119.99760 * 24.28944 * 17 16 15 19 19 C 1.38813 * 119.99846 * 204.28514 * 17 16 15 20 20 N 1.31614 * 120.00270 * 33.85651 * 19 17 16 21 21 Si 1.86802 * 119.99725 * 213.85663 * 19 17 16 22 22 H 1.48496 * 109.47114 * 180.02562 * 21 19 17 23 23 H 1.48504 * 109.47268 * 60.00151 * 21 19 17 24 24 H 1.48504 * 109.47203 * 299.99806 * 21 19 17 25 25 C 1.48853 * 122.12305 * 93.88899 * 16 15 14 26 26 C 1.43617 * 119.96814 * 351.63441 * 12 10 9 27 27 C 1.41548 * 118.94148 * 0.02562 * 5 4 3 28 28 N 1.31239 * 119.15577 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47199 * 269.97597 * 1 2 3 30 30 H 1.09001 * 109.47019 * 29.97684 * 1 2 3 31 31 H 1.09000 * 109.47062 * 149.98312 * 1 2 3 32 32 H 1.07994 * 120.04802 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.92232 * 179.97438 * 4 3 2 34 34 H 1.07999 * 119.95759 * 0.02644 * 6 5 4 35 35 H 1.08001 * 119.47725 * 180.02562 * 7 6 5 36 36 H 1.07994 * 119.64065 * 180.32920 * 8 7 6 37 37 H 1.08996 * 109.33247 * 342.20144 * 13 12 10 38 38 H 1.09000 * 109.18066 * 222.64294 * 13 12 10 39 39 H 1.09001 * 109.00733 * 297.68847 * 14 13 12 40 40 H 1.08997 * 109.00605 * 178.90019 * 14 13 12 41 41 H 1.08997 * 109.76051 * 162.05088 * 15 14 13 42 42 H 1.09004 * 109.80547 * 41.30919 * 15 14 13 43 43 H 0.97000 * 119.99616 * 5.90266 * 20 19 17 44 44 H 1.08998 * 109.47903 * 80.34430 * 25 16 15 45 45 H 1.09000 * 109.48217 * 200.37864 * 25 16 15 46 46 H 1.08992 * 108.87891 * 31.46750 * 26 12 10 47 47 H 1.09000 * 108.87192 * 150.01064 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2159 0.0000 4 6 3.5515 1.2337 -0.0005 5 6 4.2320 0.0011 -0.0005 6 6 5.6356 -0.0564 -0.0005 7 6 6.2700 -1.2629 -0.0010 8 6 5.5502 -2.4511 0.0051 9 6 4.1632 -2.4394 -0.0012 10 6 3.4080 -3.7057 -0.0018 11 8 2.2744 -3.7373 -0.4407 12 7 3.9741 -4.8281 0.4842 13 6 3.1589 -6.0540 0.6554 14 6 3.4305 -7.0052 -0.4339 15 6 4.9175 -7.3929 -0.4974 16 7 5.6275 -6.3205 -1.1330 17 6 5.7116 -6.2998 -2.4997 18 1 4.9666 -6.8076 -3.0943 19 6 6.7543 -5.6261 -3.1208 20 7 7.9422 -5.5875 -2.5554 21 14 6.4715 -4.7743 -4.7590 22 1 7.7334 -4.1331 -5.2079 23 1 5.4179 -3.7393 -4.6035 24 1 6.0384 -5.7738 -5.7684 25 6 6.2808 -5.2328 -0.3547 26 6 5.3667 -4.8353 0.8351 27 6 3.4787 -1.1973 -0.0005 28 7 2.1463 -1.1461 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6323 2.1435 -0.0004 33 1 4.0943 2.1674 -0.0010 34 1 6.2128 0.8564 -0.0001 35 1 7.3495 -1.2957 -0.0006 36 1 6.0763 -3.3942 0.0100 37 1 2.1018 -5.7884 0.6470 38 1 3.4065 -6.5183 1.6099 39 1 3.1412 -6.5515 -1.3818 40 1 2.8356 -7.9048 -0.2762 41 1 5.0353 -8.3080 -1.0777 42 1 5.3033 -7.5437 0.5109 43 1 8.1127 -6.0999 -1.7496 44 1 7.2420 -5.5824 0.0222 45 1 6.4358 -4.3673 -0.9990 46 1 5.6486 -3.8404 1.1797 47 1 5.5221 -5.5462 1.6466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981414208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:39 Heat of formation + Delta-G solvation = 98.626362 kcal Electronic energy + Delta-G solvation = -30789.566603 eV Core-core repulsion = 26940.075592 eV Total energy + Delta-G solvation = -3849.491011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.08599 -39.66672 -37.13160 -36.99221 -34.40037 -33.83479 -32.82072 -31.84759 -30.99763 -29.79031 -28.26790 -27.47032 -25.46170 -24.01140 -23.57881 -23.36564 -22.37729 -21.50582 -19.80057 -18.90209 -18.50360 -17.30319 -16.93105 -16.41351 -15.94926 -15.71696 -15.24569 -14.79607 -14.55038 -14.33926 -14.06247 -13.75255 -13.63727 -13.51321 -13.11699 -12.94590 -12.92592 -12.89509 -12.67534 -12.28534 -12.12767 -12.04924 -11.68965 -11.44924 -11.31567 -11.09515 -10.71335 -10.56850 -10.42294 -10.32112 -10.23711 -10.16800 -9.99294 -9.57524 -9.48284 -8.93391 -8.58033 -8.25452 -8.15409 -8.01091 -6.93876 -6.14559 -3.19183 0.28808 0.87744 1.86082 2.87822 3.44766 3.49755 3.51332 3.57797 3.73037 4.20633 4.27242 4.53113 4.59624 4.69758 4.80240 4.88633 5.01273 5.04503 5.17574 5.26490 5.34493 5.42277 5.46327 5.49396 5.53192 5.56571 5.63669 5.71902 5.85801 5.89734 5.92065 5.96504 6.00024 6.04318 6.08822 6.19053 6.33454 6.37038 6.42268 6.48011 6.55644 6.60162 6.75682 6.78645 6.87662 6.99759 7.22472 7.93799 8.06820 8.13815 8.53697 8.78166 9.10789 9.82177 10.21186 11.13122 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.004695 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.524693 B = 5961.966937 C = 6853.508950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.151 3.849 3 C -0.178 4.178 4 C -0.056 4.056 5 C -0.117 4.117 6 C -0.081 4.081 7 C -0.121 4.121 8 C -0.105 4.105 9 C -0.105 4.105 10 C 0.564 3.436 11 O -0.515 6.515 12 N -0.584 5.584 13 C 0.135 3.865 14 C -0.169 4.169 15 C 0.165 3.835 16 N -0.588 5.588 17 C -0.357 4.357 18 H 0.056 0.944 19 C -0.013 4.013 20 N -0.903 5.903 21 Si 1.040 2.960 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.292 1.292 25 C 0.123 3.877 26 C 0.055 3.945 27 C 0.169 3.831 28 N -0.443 5.443 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.190 0.810 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.031 0.969 43 H 0.267 0.733 44 H 0.040 0.960 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.352 11.835 10.596 17.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.002 4.002 3 C -0.198 4.198 4 C -0.082 4.082 5 C -0.120 4.120 6 C -0.100 4.100 7 C -0.139 4.139 8 C -0.124 4.124 9 C -0.109 4.109 10 C 0.353 3.647 11 O -0.390 6.390 12 N -0.316 5.316 13 C 0.013 3.987 14 C -0.210 4.210 15 C 0.037 3.963 16 N -0.310 5.310 17 C -0.486 4.486 18 H 0.073 0.927 19 C -0.216 4.216 20 N -0.542 5.542 21 Si 0.870 3.130 22 H -0.211 1.211 23 H -0.221 1.221 24 H -0.219 1.219 25 C -0.003 4.003 26 C -0.071 4.071 27 C 0.045 3.955 28 N -0.151 5.151 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.206 0.794 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.099 0.901 46 H 0.112 0.888 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.654 11.882 9.210 16.440 hybrid contribution -0.117 -0.149 0.917 0.936 sum -6.770 11.733 10.127 16.913 Atomic orbital electron populations 1.20751 0.88833 1.03620 1.02999 1.21611 0.97333 0.88139 0.93070 1.21690 0.95033 0.99172 1.03880 1.21410 0.94435 0.96931 0.95403 1.18781 0.94858 0.93840 1.04473 1.21124 0.92481 0.98655 0.97706 1.20998 1.00902 0.91940 1.00026 1.23524 0.93717 1.02325 0.92851 1.19854 0.93350 0.92453 1.05268 1.17804 0.86094 0.82764 0.78081 1.90754 1.18637 1.85411 1.44221 1.47170 1.09455 1.10688 1.64283 1.20531 0.95685 0.84471 0.97983 1.21832 1.00967 0.98010 1.00192 1.20296 0.89573 0.91068 0.95404 1.43600 1.62561 1.21684 1.03177 1.19864 1.09165 1.37846 0.81699 0.92660 1.25548 0.91372 1.00887 1.03805 1.70842 1.19045 1.42780 1.21503 0.83895 0.75601 0.77244 0.76289 1.21053 1.22054 1.21860 1.22403 0.93131 0.92867 0.91944 1.22833 0.82525 1.02667 0.99027 1.18541 0.89130 0.91454 0.96329 1.68048 1.08023 1.27871 1.11170 0.90422 0.90808 0.90014 0.84784 0.84416 0.85140 0.84647 0.79356 0.90410 0.92172 0.90993 0.92620 0.93390 0.95030 0.92252 0.94276 0.90095 0.88843 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.15 36.00 0.37 -0.77 16 2 C 0.15 2.18 6.78 -82.48 -0.56 1.62 16 3 C -0.18 -2.04 9.64 -39.79 -0.38 -2.42 16 4 C -0.06 -0.65 9.89 -39.19 -0.39 -1.04 16 5 C -0.12 -1.75 5.74 -106.82 -0.61 -2.36 16 6 C -0.08 -1.04 9.75 -39.43 -0.38 -1.42 16 7 C -0.12 -1.70 9.93 -40.02 -0.40 -2.10 16 8 C -0.11 -1.80 7.22 -39.16 -0.28 -2.09 16 9 C -0.11 -2.06 5.71 -104.61 -0.60 -2.65 16 10 C 0.56 12.13 7.44 -12.51 -0.09 12.04 16 11 O -0.51 -12.49 15.11 5.27 0.08 -12.41 16 12 N -0.58 -11.21 2.46 -177.85 -0.44 -11.65 16 13 C 0.13 2.37 5.65 -5.91 -0.03 2.33 16 14 C -0.17 -3.19 5.64 -29.13 -0.16 -3.35 16 15 C 0.16 3.35 5.63 -5.23 -0.03 3.33 16 16 N -0.59 -14.00 2.41 -171.78 -0.41 -14.42 16 17 C -0.36 -9.83 9.06 -15.06 -0.14 -9.97 16 18 H 0.06 1.60 8.02 -52.48 -0.42 1.18 16 19 C -0.01 -0.36 4.39 -17.43 -0.08 -0.44 16 20 N -0.90 -25.64 12.66 55.49 0.70 -24.94 16 21 Si 1.04 25.74 30.03 -169.99 -5.10 20.64 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 C 0.12 2.59 4.45 -1.56 -0.01 2.59 16 26 C 0.05 0.95 4.71 -4.39 -0.02 0.93 16 27 C 0.17 3.12 6.59 -84.58 -0.56 2.56 16 28 N -0.44 -8.27 8.63 -7.01 -0.06 -8.33 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.19 3.33 1.65 -52.67 -0.09 3.24 16 37 H 0.08 1.41 7.23 -51.93 -0.38 1.03 16 38 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 39 H 0.07 1.65 7.91 -51.93 -0.41 1.24 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.05 1.01 8.02 -51.93 -0.42 0.60 16 42 H 0.03 0.58 7.59 -51.93 -0.39 0.18 16 43 H 0.27 7.56 7.00 -40.82 -0.29 7.28 16 44 H 0.04 0.83 7.39 -51.93 -0.38 0.45 16 45 H 0.08 1.90 4.96 -51.93 -0.26 1.65 16 46 H 0.09 1.45 4.31 -51.94 -0.22 1.23 16 47 H 0.07 1.01 7.72 -51.93 -0.40 0.61 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -34.78 365.52 -10.33 -45.11 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.25 Total: 3.71 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -4.36 Total: -3.22 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.21 Total: -59.34 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.08 Total: -12.41 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.10 Total: 20.64 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.78 -10.33 -45.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981414208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.741 kcal (2) G-P(sol) polarization free energy of solvation -34.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds