Wall clock time and date at job start Tue Mar 31 2020 22:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39227 * 119.15344 * 2 1 4 4 C 1.36636 * 119.90100 * 180.02562 * 3 2 1 5 5 C 1.40804 * 118.15720 * 359.97438 * 4 3 2 6 6 C 1.40473 * 121.25192 * 180.02562 * 5 4 3 7 7 C 1.36312 * 120.08382 * 180.02562 * 6 5 4 8 8 C 1.38919 * 121.05542 * 359.67980 * 7 6 5 9 9 C 1.38709 * 120.72400 * 0.62893 * 8 7 6 10 10 C 1.47436 * 120.33048 * 179.67623 * 9 8 7 11 11 O 1.21605 * 119.99919 * 204.32844 * 10 9 8 12 12 N 1.34777 * 119.99838 * 24.33321 * 10 9 8 13 13 C 1.48209 * 119.96472 * 171.65747 * 12 10 9 14 14 C 1.47145 * 110.34280 * 102.46803 * 13 12 10 15 15 C 1.53802 * 111.83996 * 58.29320 * 14 13 12 16 16 N 1.43462 * 107.95865 * 281.66956 * 15 14 13 17 17 C 1.36940 * 118.93745 * 273.60736 * 16 15 14 18 18 H 1.08004 * 119.99760 * 24.28944 * 17 16 15 19 19 C 1.38813 * 119.99846 * 204.28514 * 17 16 15 20 20 N 1.31614 * 120.00270 * 33.85651 * 19 17 16 21 21 Si 1.86802 * 119.99725 * 213.85663 * 19 17 16 22 22 H 1.48496 * 109.47114 * 180.02562 * 21 19 17 23 23 H 1.48504 * 109.47268 * 60.00151 * 21 19 17 24 24 H 1.48504 * 109.47203 * 299.99806 * 21 19 17 25 25 C 1.48853 * 122.12305 * 93.88899 * 16 15 14 26 26 C 1.43617 * 119.96814 * 351.63441 * 12 10 9 27 27 C 1.41548 * 118.94148 * 0.02562 * 5 4 3 28 28 N 1.31239 * 119.15577 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47199 * 269.97597 * 1 2 3 30 30 H 1.09001 * 109.47019 * 29.97684 * 1 2 3 31 31 H 1.09000 * 109.47062 * 149.98312 * 1 2 3 32 32 H 1.07994 * 120.04802 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.92232 * 179.97438 * 4 3 2 34 34 H 1.07999 * 119.95759 * 0.02644 * 6 5 4 35 35 H 1.08001 * 119.47725 * 180.02562 * 7 6 5 36 36 H 1.07994 * 119.64065 * 180.32920 * 8 7 6 37 37 H 1.08996 * 109.33247 * 342.20144 * 13 12 10 38 38 H 1.09000 * 109.18066 * 222.64294 * 13 12 10 39 39 H 1.09001 * 109.00733 * 297.68847 * 14 13 12 40 40 H 1.08997 * 109.00605 * 178.90019 * 14 13 12 41 41 H 1.08997 * 109.76051 * 162.05088 * 15 14 13 42 42 H 1.09004 * 109.80547 * 41.30919 * 15 14 13 43 43 H 0.97000 * 119.99616 * 5.90266 * 20 19 17 44 44 H 1.08998 * 109.47903 * 80.34430 * 25 16 15 45 45 H 1.09000 * 109.48217 * 200.37864 * 25 16 15 46 46 H 1.08992 * 108.87891 * 31.46750 * 26 12 10 47 47 H 1.09000 * 108.87192 * 150.01064 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2159 0.0000 4 6 3.5515 1.2337 -0.0005 5 6 4.2320 0.0011 -0.0005 6 6 5.6356 -0.0564 -0.0005 7 6 6.2700 -1.2629 -0.0010 8 6 5.5502 -2.4511 0.0051 9 6 4.1632 -2.4394 -0.0012 10 6 3.4080 -3.7057 -0.0018 11 8 2.2744 -3.7373 -0.4407 12 7 3.9741 -4.8281 0.4842 13 6 3.1589 -6.0540 0.6554 14 6 3.4305 -7.0052 -0.4339 15 6 4.9175 -7.3929 -0.4974 16 7 5.6275 -6.3205 -1.1330 17 6 5.7116 -6.2998 -2.4997 18 1 4.9666 -6.8076 -3.0943 19 6 6.7543 -5.6261 -3.1208 20 7 7.9422 -5.5875 -2.5554 21 14 6.4715 -4.7743 -4.7590 22 1 7.7334 -4.1331 -5.2079 23 1 5.4179 -3.7393 -4.6035 24 1 6.0384 -5.7738 -5.7684 25 6 6.2808 -5.2328 -0.3547 26 6 5.3667 -4.8353 0.8351 27 6 3.4787 -1.1973 -0.0005 28 7 2.1463 -1.1461 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6323 2.1435 -0.0004 33 1 4.0943 2.1674 -0.0010 34 1 6.2128 0.8564 -0.0001 35 1 7.3495 -1.2957 -0.0006 36 1 6.0763 -3.3942 0.0100 37 1 2.1018 -5.7884 0.6470 38 1 3.4065 -6.5183 1.6099 39 1 3.1412 -6.5515 -1.3818 40 1 2.8356 -7.9048 -0.2762 41 1 5.0353 -8.3080 -1.0777 42 1 5.3033 -7.5437 0.5109 43 1 8.1127 -6.0999 -1.7496 44 1 7.2420 -5.5824 0.0222 45 1 6.4358 -4.3673 -0.9990 46 1 5.6486 -3.8404 1.1797 47 1 5.5221 -5.5462 1.6466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981414208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:38 Heat of formation + Delta-G solvation = 77.368391 kcal Electronic energy + Delta-G solvation = -30790.488418 eV Core-core repulsion = 26940.075592 eV Total energy + Delta-G solvation = -3850.412826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.30071 -41.01864 -38.69064 -38.28703 -36.15988 -35.17873 -34.08773 -33.04766 -32.71892 -31.00320 -29.76402 -28.65989 -27.14250 -25.66176 -24.93260 -24.70982 -23.39074 -22.87959 -21.57530 -20.33359 -19.73419 -19.09086 -18.28887 -17.70653 -17.23979 -17.09661 -16.60989 -16.26300 -15.94912 -15.75071 -15.53712 -15.39000 -14.98167 -14.81624 -14.60711 -14.44986 -14.25041 -13.97708 -13.80888 -13.64251 -13.57420 -13.18174 -13.01680 -12.98003 -12.65378 -12.59109 -12.45187 -12.12251 -12.03910 -11.94945 -11.91042 -11.62994 -11.46710 -11.42299 -10.92662 -10.35526 -10.16448 -9.69729 -9.60892 -9.24296 -8.91648 -8.29407 -5.31885 -0.80669 -0.20116 0.76291 1.47697 1.53648 1.73110 1.74564 2.03391 2.11601 2.57339 3.04465 3.08395 3.21338 3.42047 3.52110 3.70527 3.79510 3.89042 3.96161 4.02075 4.03923 4.08733 4.18706 4.28956 4.34303 4.42231 4.44233 4.52426 4.57803 4.66555 4.70459 4.75305 4.78527 4.90671 4.92913 4.94675 4.97286 5.06136 5.07130 5.13886 5.15729 5.23871 5.34582 5.40009 5.57781 5.70206 5.84632 5.87181 6.38292 6.45934 7.07509 7.09683 7.24306 7.80333 8.17317 8.94534 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.004695 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.524693 B = 5961.966937 C = 6853.508950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.140 3.860 3 C -0.175 4.175 4 C -0.044 4.044 5 C -0.137 4.137 6 C -0.053 4.053 7 C -0.139 4.139 8 C -0.106 4.106 9 C -0.152 4.152 10 C 0.553 3.447 11 O -0.562 6.562 12 N -0.586 5.586 13 C 0.131 3.869 14 C -0.153 4.153 15 C 0.162 3.838 16 N -0.603 5.603 17 C -0.363 4.363 18 H 0.029 0.971 19 C -0.048 4.048 20 N -0.915 5.915 21 Si 1.077 2.923 22 H -0.277 1.277 23 H -0.305 1.305 24 H -0.281 1.281 25 C 0.129 3.871 26 C 0.064 3.936 27 C 0.139 3.861 28 N -0.505 5.505 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.054 0.946 32 H 0.180 0.820 33 H 0.187 0.813 34 H 0.180 0.820 35 H 0.162 0.838 36 H 0.179 0.821 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.020 0.980 40 H 0.087 0.913 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.260 0.740 44 H 0.040 0.960 45 H 0.054 0.946 46 H 0.114 0.886 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 15.032 12.140 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.012 4.012 3 C -0.194 4.194 4 C -0.069 4.069 5 C -0.139 4.139 6 C -0.072 4.072 7 C -0.157 4.157 8 C -0.125 4.125 9 C -0.155 4.155 10 C 0.343 3.657 11 O -0.441 6.441 12 N -0.317 5.317 13 C 0.010 3.990 14 C -0.194 4.194 15 C 0.035 3.965 16 N -0.326 5.326 17 C -0.493 4.493 18 H 0.047 0.953 19 C -0.249 4.249 20 N -0.555 5.555 21 Si 0.905 3.095 22 H -0.202 1.202 23 H -0.233 1.233 24 H -0.207 1.207 25 C 0.003 3.997 26 C -0.061 4.061 27 C 0.016 3.984 28 N -0.214 5.214 29 H 0.110 0.890 30 H 0.128 0.872 31 H 0.073 0.927 32 H 0.197 0.803 33 H 0.205 0.795 34 H 0.197 0.803 35 H 0.180 0.820 36 H 0.195 0.805 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.039 0.961 40 H 0.105 0.895 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.131 0.869 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.939 15.051 10.783 19.444 hybrid contribution -0.440 -1.065 0.457 1.240 sum -6.379 13.986 11.240 19.043 Atomic orbital electron populations 1.20856 0.87101 1.04004 1.04024 1.22334 0.98837 0.88547 0.91527 1.22134 0.95467 0.99504 1.02291 1.21980 0.94716 0.97283 0.92923 1.19174 0.95891 0.93970 1.04870 1.21659 0.91880 0.99925 0.93723 1.21292 1.02110 0.91407 1.00861 1.23472 0.92918 1.03379 0.92706 1.19885 0.94275 0.92151 1.09238 1.18392 0.85882 0.84121 0.77267 1.90694 1.20667 1.86293 1.46465 1.47336 1.10178 1.10646 1.63513 1.20667 0.95223 0.83859 0.99262 1.21653 1.00361 0.99261 0.98144 1.20429 0.89959 0.89681 0.96461 1.43788 1.63027 1.23478 1.02331 1.19891 1.08008 1.37631 0.83773 0.95320 1.26330 0.91230 1.01463 1.05835 1.70908 1.19279 1.43538 1.21758 0.83337 0.75297 0.76478 0.74382 1.20186 1.23265 1.20720 1.22353 0.93801 0.91094 0.92439 1.22766 0.80777 1.04749 0.97815 1.18818 0.89731 0.92419 0.97406 1.67997 1.08820 1.30502 1.14101 0.88969 0.87215 0.92720 0.80276 0.79535 0.80261 0.82025 0.80464 0.91496 0.87994 0.96137 0.89516 0.94681 0.91842 0.93014 0.94221 0.92775 0.86854 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.15 10.15 71.24 0.72 -1.43 16 2 C 0.14 3.91 6.78 42.88 0.29 4.20 16 3 C -0.17 -3.38 9.64 22.13 0.21 -3.16 16 4 C -0.04 -0.83 9.89 22.52 0.22 -0.61 16 5 C -0.14 -3.78 5.74 -21.29 -0.12 -3.90 16 6 C -0.05 -1.20 9.75 22.37 0.22 -0.98 16 7 C -0.14 -3.68 9.93 21.98 0.22 -3.46 16 8 C -0.11 -3.68 7.22 22.55 0.16 -3.52 16 9 C -0.15 -6.17 5.71 -19.86 -0.11 -6.29 16 10 C 0.55 25.25 7.44 86.67 0.64 25.89 16 11 O -0.56 -29.51 15.11 -4.05 -0.06 -29.58 16 12 N -0.59 -23.10 2.46 -834.84 -2.05 -25.15 16 13 C 0.13 4.62 5.65 84.23 0.48 5.10 16 14 C -0.15 -5.91 5.64 29.04 0.16 -5.75 16 15 C 0.16 6.62 5.63 87.21 0.49 7.11 16 16 N -0.60 -29.52 2.41 -697.38 -1.68 -31.20 16 17 C -0.36 -20.85 9.06 84.03 0.76 -20.09 16 18 H 0.03 1.76 8.02 -2.91 -0.02 1.74 16 19 C -0.05 -2.76 4.39 84.86 0.37 -2.39 16 20 N -0.91 -52.79 12.66 21.65 0.27 -52.52 16 21 Si 1.08 53.57 30.03 68.60 2.06 55.63 16 22 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 23 H -0.30 -15.59 7.11 99.48 0.71 -14.88 16 24 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 25 C 0.13 5.53 4.45 86.69 0.39 5.92 16 26 C 0.06 2.18 4.71 87.67 0.41 2.60 16 27 C 0.14 5.26 6.59 40.62 0.27 5.52 16 28 N -0.50 -19.57 8.63 -176.10 -1.52 -21.09 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.11 1.44 8.07 -2.39 -0.02 1.42 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.18 1.77 8.06 -2.91 -0.02 1.74 16 33 H 0.19 1.67 8.06 -2.91 -0.02 1.64 16 34 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 36 H 0.18 6.41 1.65 -3.08 -0.01 6.41 16 37 H 0.07 2.52 7.23 -2.39 -0.02 2.50 16 38 H 0.10 2.77 8.05 -2.39 -0.02 2.75 16 39 H 0.02 0.98 7.91 -2.39 -0.02 0.96 16 40 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.03 1.51 8.02 -2.39 -0.02 1.49 16 42 H 0.06 2.20 7.59 -2.39 -0.02 2.18 16 43 H 0.26 14.99 7.00 -92.71 -0.65 14.34 16 44 H 0.04 1.69 7.39 -2.39 -0.02 1.68 16 45 H 0.05 2.64 4.96 -2.39 -0.01 2.62 16 46 H 0.11 3.52 4.31 -2.39 -0.01 3.51 16 47 H 0.10 2.74 7.72 -2.39 -0.02 2.72 16 Total: -1.00 -84.28 365.52 3.93 -80.35 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 1.12 Total: 18.78 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 5.79 Total: 4.77 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -4.98 Total: -129.96 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.06 Total: -29.58 kcal Atomic # 14 Polarization: 53.57 SS G_CDS: 2.06 Total: 55.63 kcal Total: -84.28 3.93 -80.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981414208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.721 kcal (2) G-P(sol) polarization free energy of solvation -84.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds