Wall clock time and date at job start Tue Mar 31 2020 22:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39433 * 119.54668 * 2 1 4 4 C 1.35997 * 121.08618 * 179.97438 * 3 2 1 5 5 C 1.40830 * 119.73960 * 0.02562 * 4 3 2 6 6 N 1.33268 * 120.99508 * 180.02562 * 5 4 3 7 7 C 1.31881 * 121.29469 * 179.97438 * 6 5 4 8 8 C 1.48284 * 119.23620 * 179.97438 * 7 6 5 9 9 O 1.21494 * 119.99859 * 186.31152 * 8 7 6 10 10 N 1.34775 * 119.99616 * 6.30914 * 8 7 6 11 11 C 1.48213 * 119.96713 * 186.57898 * 10 8 7 12 12 C 1.47142 * 110.33976 * 102.51471 * 11 10 8 13 13 C 1.53798 * 111.83974 * 58.30294 * 12 11 10 14 14 N 1.43465 * 107.95760 * 281.66430 * 13 12 11 15 15 C 1.36934 * 118.93987 * 273.60990 * 14 13 12 16 16 H 1.08001 * 120.00264 * 28.31143 * 15 14 13 17 17 C 1.38814 * 120.00380 * 208.30290 * 15 14 13 18 18 N 1.31617 * 120.00470 * 203.12172 * 17 15 14 19 19 Si 1.86807 * 119.99598 * 23.12915 * 17 15 14 20 20 H 1.48499 * 109.46773 * 265.85696 * 19 17 15 21 21 H 1.48492 * 109.46951 * 145.85471 * 19 17 15 22 22 H 1.48501 * 109.47116 * 25.85743 * 19 17 15 23 23 C 1.48860 * 122.12378 * 93.88715 * 14 13 12 24 24 C 1.43625 * 119.97370 * 6.60976 * 10 8 7 25 25 C 1.40273 * 121.52779 * 0.25300 * 7 6 5 26 26 C 1.36506 * 119.81247 * 359.50551 * 25 7 6 27 27 C 1.40761 * 118.24003 * 0.45757 * 26 25 7 28 28 C 1.36137 * 119.54151 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46667 * 269.97975 * 1 2 3 30 30 H 1.08994 * 109.46917 * 29.97234 * 1 2 3 31 31 H 1.08998 * 109.47519 * 149.97815 * 1 2 3 32 32 H 1.07998 * 119.45806 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.12904 * 180.02562 * 4 3 2 34 34 H 1.09004 * 109.32648 * 342.25392 * 11 10 8 35 35 H 1.08997 * 109.18309 * 222.69528 * 11 10 8 36 36 H 1.08997 * 109.01112 * 297.69372 * 12 11 10 37 37 H 1.08997 * 109.00564 * 178.90439 * 12 11 10 38 38 H 1.08994 * 109.76625 * 162.05043 * 13 12 11 39 39 H 1.09004 * 109.80837 * 41.29778 * 13 12 11 40 40 H 0.96999 * 119.99713 * 5.13363 * 18 17 15 41 41 H 1.08994 * 109.47867 * 80.34700 * 23 14 13 42 42 H 1.08994 * 109.48551 * 200.38625 * 23 14 13 43 43 H 1.09001 * 108.87459 * 31.41605 * 24 10 8 44 44 H 1.08995 * 108.87518 * 149.86076 * 24 10 8 45 45 H 1.08002 * 120.09765 * 179.74537 * 25 7 6 46 46 H 1.07992 * 120.88314 * 180.24266 * 26 25 7 47 47 H 1.07999 * 120.17646 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.2130 0.0000 4 6 3.5541 1.2495 0.0005 5 6 4.2853 0.0459 0.0005 6 7 5.6179 0.0526 0.0015 7 6 6.3086 -1.0710 0.0021 8 6 7.7902 -1.0104 0.0026 9 8 8.4399 -2.0305 -0.1126 10 7 8.4159 0.1764 0.1308 11 6 9.8888 0.2562 -0.0144 12 6 10.2438 0.7962 -1.3364 13 6 9.6378 2.1909 -1.5663 14 7 8.2541 2.0217 -1.9051 15 6 7.9140 1.8044 -3.2136 16 1 8.6126 1.3200 -3.8798 17 6 6.6714 2.2065 -3.6839 18 7 6.1527 1.6311 -4.7479 19 14 5.7356 3.5645 -2.8066 20 1 4.7959 2.9642 -1.8259 21 1 4.9720 4.3611 -3.8004 22 1 6.6951 4.4478 -2.0963 23 6 7.1754 2.0806 -0.8809 24 6 7.6551 1.3624 0.4088 25 6 5.6741 -2.3220 -0.0037 26 6 4.3108 -2.3915 0.0002 27 6 3.5824 -1.1870 0.0001 28 6 2.1782 -1.1844 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6384 2.1388 0.0004 33 1 4.0709 2.1979 0.0009 34 1 10.3166 -0.7403 0.0948 35 1 10.2903 0.9082 0.7612 36 1 9.8768 0.1183 -2.1070 37 1 11.3290 0.8637 -1.4125 38 1 10.1591 2.6891 -2.3836 39 1 9.7245 2.7858 -0.6570 40 1 6.6028 0.8768 -5.1594 41 1 6.9440 3.1218 -0.6563 42 1 6.2836 1.5841 -1.2631 43 1 6.7846 1.0910 1.0061 44 1 8.2738 2.0516 0.9835 45 1 6.2624 -3.2277 -0.0073 46 1 3.8044 -3.3454 -0.0002 47 1 1.6336 -2.1170 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981592519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:51 Heat of formation + Delta-G solvation = 50.384986 kcal Electronic energy + Delta-G solvation = -31010.529237 eV Core-core repulsion = 27158.946322 eV Total energy + Delta-G solvation = -3851.582914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.27156 -40.94510 -38.91159 -38.23474 -36.14449 -34.92929 -34.15331 -33.40817 -32.82177 -31.27614 -29.46086 -28.47570 -27.30633 -25.42995 -24.89836 -24.70080 -23.45418 -22.91456 -21.63818 -20.63186 -19.45038 -19.01948 -18.45216 -17.93339 -17.43616 -16.94911 -16.67339 -16.30426 -15.90315 -15.74385 -15.51948 -15.19435 -15.12032 -15.02883 -14.68393 -14.54956 -14.31444 -14.13951 -14.04419 -13.86630 -13.62915 -13.34693 -13.19588 -12.85489 -12.59360 -12.39500 -12.31842 -12.19118 -11.97286 -11.94662 -11.71719 -11.57257 -11.48726 -11.31352 -11.23573 -10.58410 -10.25428 -9.80071 -9.58433 -9.15439 -8.91965 -8.54521 -5.49932 -0.82824 -0.34247 0.91825 1.33700 1.40811 1.55011 1.71797 1.91117 2.21270 2.57471 2.89029 3.05419 3.12221 3.46457 3.55926 3.63125 3.79320 3.83043 3.97357 4.03765 4.15037 4.17395 4.21467 4.33876 4.38004 4.40244 4.48039 4.59168 4.67236 4.73963 4.76871 4.84720 4.91437 4.92282 4.96395 4.99077 5.02716 5.08422 5.14479 5.20692 5.23783 5.32600 5.38485 5.50898 5.56838 5.66792 5.81237 5.88598 6.27208 6.32786 6.62541 6.94733 7.02901 7.73677 8.07282 8.83520 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.005751 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.325065 B = 4867.135471 C = 6483.329205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 C -0.098 4.098 4 C -0.105 4.105 5 C 0.087 3.913 6 N -0.435 5.435 7 C 0.085 3.915 8 C 0.562 3.438 9 O -0.576 6.576 10 N -0.568 5.568 11 C 0.124 3.876 12 C -0.155 4.155 13 C 0.155 3.845 14 N -0.613 5.613 15 C -0.329 4.329 16 H 0.014 0.986 17 C -0.063 4.063 18 N -0.955 5.955 19 Si 1.095 2.905 20 H -0.256 1.256 21 H -0.314 1.314 22 H -0.266 1.266 23 C 0.108 3.892 24 C 0.103 3.897 25 C -0.141 4.141 26 C -0.053 4.053 27 C -0.094 4.094 28 C -0.108 4.108 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.157 0.843 33 H 0.132 0.868 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.013 0.987 37 H 0.092 0.908 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.241 0.759 41 H 0.040 0.960 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.150 0.850 46 H 0.185 0.815 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.469 -2.700 17.773 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.073 4.073 3 C -0.118 4.118 4 C -0.124 4.124 5 C -0.036 4.036 6 N -0.147 5.147 7 C -0.067 4.067 8 C 0.349 3.651 9 O -0.456 6.456 10 N -0.296 5.296 11 C 0.003 3.997 12 C -0.196 4.196 13 C 0.028 3.972 14 N -0.337 5.337 15 C -0.459 4.459 16 H 0.031 0.969 17 C -0.257 4.257 18 N -0.597 5.597 19 Si 0.920 3.080 20 H -0.182 1.182 21 H -0.244 1.244 22 H -0.191 1.191 23 C -0.016 4.016 24 C -0.022 4.022 25 C -0.162 4.162 26 C -0.078 4.078 27 C -0.096 4.096 28 C -0.126 4.126 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.175 0.825 33 H 0.150 0.850 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.032 0.968 37 H 0.110 0.890 38 H 0.056 0.944 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.085 0.915 43 H 0.125 0.875 44 H 0.107 0.893 45 H 0.168 0.832 46 H 0.202 0.798 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.024 -1.420 17.697 20.388 hybrid contribution 1.685 -1.902 -1.246 2.830 sum -8.339 -3.322 16.451 18.741 Atomic orbital electron populations 1.20923 0.87890 1.04232 1.03877 1.20195 0.98483 0.92262 0.96371 1.21214 0.93074 0.99753 0.97745 1.21108 0.94981 0.96515 0.99764 1.19370 0.89133 0.94599 1.00496 1.68298 1.07883 1.28800 1.09746 1.21304 0.93831 0.90912 1.00666 1.18317 0.86708 0.83768 0.76266 1.90655 1.66906 1.35026 1.53023 1.47414 1.08381 1.06979 1.66855 1.20832 0.78187 1.02625 0.98009 1.21664 1.01263 0.99717 0.96909 1.20531 0.84009 0.93697 0.98974 1.44103 1.02446 1.84063 1.03042 1.19959 1.02183 1.35381 0.88389 0.96861 1.27419 0.97048 1.03547 0.97717 1.70979 1.39775 1.23449 1.25498 0.83508 0.75439 0.74678 0.74359 1.18177 1.24370 1.19133 1.22694 0.92173 0.97194 0.89577 1.22117 0.97029 0.86044 0.97036 1.21779 0.96337 0.97835 1.00218 1.21810 0.92635 0.99093 0.94263 1.19258 0.96308 0.93544 1.00514 1.21184 0.90889 1.00042 1.00484 0.89063 0.90427 0.90075 0.82537 0.85020 0.90468 0.87291 0.96761 0.88999 0.94439 0.90887 0.95042 0.94233 0.91452 0.87497 0.89261 0.83246 0.79758 0.81823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.98 71.24 0.71 -0.59 16 2 C -0.07 -1.43 5.85 -20.07 -0.12 -1.55 16 3 C -0.10 -2.27 9.58 22.04 0.21 -2.06 16 4 C -0.11 -3.20 9.82 22.38 0.22 -2.98 16 5 C 0.09 2.98 6.61 40.47 0.27 3.25 16 6 N -0.43 -16.58 4.01 -177.76 -0.71 -17.29 16 7 C 0.08 3.29 6.55 42.31 0.28 3.56 16 8 C 0.56 23.39 7.64 86.92 0.66 24.06 16 9 O -0.58 -25.98 15.72 -3.70 -0.06 -26.04 16 10 N -0.57 -21.32 2.46 -833.41 -2.05 -23.37 16 11 C 0.12 4.04 5.74 84.23 0.48 4.52 16 12 C -0.15 -5.72 5.64 29.04 0.16 -5.55 16 13 C 0.15 6.17 5.63 87.21 0.49 6.66 16 14 N -0.61 -29.90 2.27 -697.39 -1.58 -31.48 16 15 C -0.33 -19.79 9.50 84.03 0.80 -18.99 16 16 H 0.01 0.91 8.06 -2.91 -0.02 0.89 16 17 C -0.06 -3.87 5.11 84.86 0.43 -3.44 16 18 N -0.95 -63.70 13.70 21.65 0.30 -63.40 16 19 Si 1.09 53.84 24.52 68.60 1.68 55.52 16 20 H -0.26 -11.22 5.64 99.48 0.56 -10.65 16 21 H -0.31 -15.92 7.11 99.48 0.71 -15.21 16 22 H -0.27 -12.00 6.62 99.48 0.66 -11.34 16 23 C 0.11 4.65 4.22 86.68 0.37 5.01 16 24 C 0.10 3.56 4.74 87.67 0.42 3.98 16 25 C -0.14 -4.55 9.54 22.36 0.21 -4.34 16 26 C -0.05 -1.35 9.88 22.48 0.22 -1.13 16 27 C -0.09 -2.66 5.75 -21.22 -0.12 -2.78 16 28 C -0.11 -2.25 9.37 22.31 0.21 -2.04 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 31 H 0.08 0.77 8.07 -2.39 -0.02 0.75 16 32 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 33 H 0.13 4.07 7.03 -2.91 -0.02 4.05 16 34 H 0.08 2.60 7.08 -2.39 -0.02 2.59 16 35 H 0.11 2.64 8.05 -2.39 -0.02 2.62 16 36 H 0.01 0.65 7.91 -2.39 -0.02 0.63 16 37 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.04 1.57 8.02 -2.39 -0.02 1.55 16 39 H 0.07 2.38 7.59 -2.38 -0.02 2.36 16 40 H 0.24 16.55 8.73 -92.71 -0.81 15.74 16 41 H 0.04 1.61 5.86 -2.39 -0.01 1.60 16 42 H 0.07 3.27 3.95 -2.39 -0.01 3.26 16 43 H 0.11 3.59 5.45 -2.39 -0.01 3.58 16 44 H 0.09 2.47 7.73 -2.39 -0.02 2.45 16 45 H 0.15 4.53 7.62 -2.91 -0.02 4.50 16 46 H 0.19 2.96 8.06 -2.91 -0.02 2.93 16 47 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -83.32 362.86 4.24 -79.08 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.76 Total: 21.39 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 5.91 Total: 5.59 kcal Atomic # 7 Polarization: -131.49 SS G_CDS: -4.05 Total: -135.54 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.06 Total: -26.04 kcal Atomic # 14 Polarization: 53.84 SS G_CDS: 1.68 Total: 55.52 kcal Total: -83.32 4.24 -79.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981592519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.466 kcal (2) G-P(sol) polarization free energy of solvation -83.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds