Wall clock time and date at job start Tue Mar 31 2020 22:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36341 * 119.95711 * 2 1 4 4 C 1.38867 * 121.06373 * 179.97438 * 3 2 1 5 5 C 1.38747 * 120.72205 * 0.02562 * 4 3 2 6 6 C 1.47431 * 120.33884 * 179.97438 * 5 4 3 7 7 O 1.21601 * 120.00344 * 204.96745 * 6 5 4 8 8 N 1.34784 * 119.99656 * 24.96595 * 6 5 4 9 9 C 1.48211 * 119.97138 * 171.05369 * 8 6 5 10 10 C 1.47137 * 110.34228 * 102.46843 * 9 8 6 11 11 C 1.53800 * 111.83882 * 58.29853 * 10 9 8 12 12 N 1.43467 * 107.95667 * 281.66403 * 11 10 9 13 13 C 1.36934 * 118.93863 * 273.60485 * 12 11 10 14 14 H 1.07997 * 120.00228 * 26.30413 * 13 12 11 15 15 C 1.38810 * 120.00106 * 206.29585 * 13 12 11 16 16 N 1.31624 * 119.99827 * 15.89756 * 15 13 12 17 17 Si 1.86802 * 120.00231 * 195.90079 * 15 13 12 18 18 H 1.48501 * 109.46743 * 265.01200 * 17 15 13 19 19 H 1.48499 * 109.47128 * 145.01652 * 17 15 13 20 20 H 1.48499 * 109.47209 * 25.01637 * 17 15 13 21 21 C 1.48855 * 122.11645 * 93.89708 * 12 11 10 22 22 C 1.43626 * 119.96536 * 351.03400 * 8 6 5 23 23 C 1.41781 * 119.32962 * 0.23257 * 5 4 3 24 24 N 1.33354 * 121.04213 * 180.34300 * 23 5 4 25 25 C 1.31229 * 121.35343 * 179.78503 * 24 23 5 26 26 C 1.39229 * 121.69371 * 359.65960 * 25 24 23 27 27 C 1.36633 * 119.90929 * 0.02562 * 26 25 24 28 28 C 1.40444 * 119.95443 * 179.97438 * 2 1 3 29 29 H 1.09011 * 109.47009 * 90.00244 * 1 2 3 30 30 H 1.09004 * 109.47013 * 209.99723 * 1 2 3 31 31 H 1.08994 * 109.47385 * 330.00216 * 1 2 3 32 32 H 1.07998 * 119.47240 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.64695 * 179.97438 * 4 3 2 34 34 H 1.09005 * 109.32311 * 342.20201 * 9 8 6 35 35 H 1.08997 * 109.17995 * 222.64620 * 9 8 6 36 36 H 1.09004 * 109.00661 * 297.69093 * 10 9 8 37 37 H 1.08998 * 109.00637 * 178.90606 * 10 9 8 38 38 H 1.08996 * 109.76148 * 162.05305 * 11 10 9 39 39 H 1.08993 * 109.80982 * 41.30551 * 11 10 9 40 40 H 0.97006 * 120.00037 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.48773 * 80.34207 * 21 12 11 42 42 H 1.09005 * 109.47898 * 200.37558 * 21 12 11 43 43 H 1.08995 * 108.87614 * 31.46836 * 22 8 6 44 44 H 1.08997 * 108.86872 * 150.00631 * 22 8 6 45 45 H 1.07998 * 119.15411 * 179.68081 * 25 24 23 46 46 H 1.08000 * 120.04255 * 180.02562 * 26 25 24 47 47 H 1.07998 * 120.92248 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1813 0.0000 4 6 3.5762 1.2081 0.0005 5 6 4.3080 0.0292 0.0005 6 6 5.7818 0.0676 0.0005 7 8 6.4145 -0.8709 -0.4439 8 7 6.4279 1.1430 0.4932 9 6 7.8980 1.1034 0.6772 10 6 8.5690 1.8399 -0.4054 11 6 8.1081 3.3057 -0.4715 12 7 6.8279 3.3381 -1.1184 13 6 6.7777 3.3999 -2.4854 14 1 7.5947 3.0095 -3.0740 15 6 5.6766 3.9641 -3.1147 16 7 4.8379 4.7114 -2.4287 17 14 5.3852 3.6629 -4.9351 18 1 5.9631 4.7827 -5.7208 19 1 3.9256 3.5774 -5.1952 20 1 6.0349 2.3894 -5.3364 21 6 5.5527 3.3132 -0.3510 22 6 5.6911 2.3264 0.8390 23 6 3.6240 -1.2127 -0.0050 24 7 4.2931 -2.3662 0.0017 25 6 3.6663 -3.5191 0.0008 26 6 2.2761 -3.5959 -0.0001 27 6 1.5305 -2.4510 -0.0006 28 6 2.2083 -1.2168 0.0005 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6386 2.1111 -0.0004 33 1 4.0922 2.1568 0.0001 34 1 8.2345 0.0666 0.6708 35 1 8.1515 1.5589 1.6345 36 1 8.3466 1.3547 -1.3558 37 1 9.6458 1.8136 -0.2384 38 1 8.8258 3.8922 -1.0450 39 1 8.0221 3.7117 0.5364 40 1 4.0682 5.1054 -2.8684 41 1 5.3349 4.3129 0.0250 42 1 4.7427 2.9854 -1.0027 43 1 4.6955 2.0364 1.1747 44 1 6.2038 2.8349 1.6554 45 1 4.2436 -4.4319 0.0011 46 1 1.7878 -4.5593 -0.0004 47 1 0.4513 -2.4915 -0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981632020.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:09 Heat of formation + Delta-G solvation = 100.732010 kcal Electronic energy + Delta-G solvation = -30812.083718 eV Core-core repulsion = 26962.684014 eV Total energy + Delta-G solvation = -3849.399704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.07841 -39.53808 -37.15911 -36.82450 -34.39934 -34.11392 -32.72695 -31.12459 -30.81708 -30.31012 -28.03951 -27.26359 -25.39014 -24.19880 -23.85130 -23.41804 -22.39722 -20.99412 -19.75821 -18.81264 -18.39473 -17.03601 -16.88380 -16.48017 -15.85928 -15.59736 -15.11498 -14.68384 -14.57406 -14.25083 -13.98778 -13.87242 -13.60702 -13.42712 -13.27255 -13.15710 -12.90853 -12.70906 -12.48287 -12.23395 -12.10878 -11.88323 -11.52522 -11.41905 -11.27892 -11.06737 -10.77527 -10.56211 -10.38555 -10.32346 -10.23913 -10.04116 -9.85905 -9.70410 -9.51630 -8.88434 -8.65848 -8.46919 -8.02550 -7.87993 -6.70272 -5.82604 -3.23166 0.30948 0.92687 1.88423 2.91269 3.36573 3.44139 3.50213 3.55016 3.58334 4.28751 4.40296 4.50070 4.55236 4.78680 4.79699 4.84152 5.05038 5.08264 5.21562 5.24806 5.35602 5.45365 5.46260 5.55413 5.61502 5.67350 5.68804 5.80488 5.84684 5.97790 6.00696 6.04530 6.06507 6.10496 6.14181 6.31808 6.39951 6.46345 6.49809 6.58350 6.60138 6.85778 6.91544 6.93386 7.09460 7.28588 7.38894 7.80869 8.03335 8.15662 8.42408 8.86563 9.18410 9.85804 10.31305 11.25867 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011050 B = 0.004838 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.301246 B = 5785.956153 C = 6894.174673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.053 4.053 3 C -0.121 4.121 4 C -0.099 4.099 5 C -0.111 4.111 6 C 0.564 3.436 7 O -0.519 6.519 8 N -0.583 5.583 9 C 0.135 3.865 10 C -0.170 4.170 11 C 0.163 3.837 12 N -0.586 5.586 13 C -0.249 4.249 14 H 0.065 0.935 15 C 0.005 3.995 16 N -0.909 5.909 17 Si 0.895 3.105 18 H -0.287 1.287 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.149 3.851 22 C 0.045 3.955 23 C 0.166 3.834 24 N -0.441 5.441 25 C 0.124 3.876 26 C -0.183 4.183 27 C -0.060 4.060 28 C -0.110 4.110 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.196 0.804 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.034 0.966 40 H 0.253 0.747 41 H 0.049 0.951 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.156 0.844 46 H 0.134 0.866 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.263 -9.618 10.086 16.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.054 4.054 3 C -0.139 4.139 4 C -0.118 4.118 5 C -0.114 4.114 6 C 0.352 3.648 7 O -0.395 6.395 8 N -0.315 5.315 9 C 0.013 3.987 10 C -0.211 4.211 11 C 0.035 3.965 12 N -0.307 5.307 13 C -0.379 4.379 14 H 0.082 0.918 15 C -0.193 4.193 16 N -0.555 5.555 17 Si 0.725 3.275 18 H -0.214 1.214 19 H -0.215 1.215 20 H -0.205 1.205 21 C 0.024 3.976 22 C -0.080 4.080 23 C 0.043 3.957 24 N -0.148 5.148 25 C -0.049 4.049 26 C -0.203 4.203 27 C -0.086 4.086 28 C -0.112 4.112 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.212 0.788 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.173 0.827 46 H 0.152 0.848 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.098 -9.889 9.820 15.640 hybrid contribution -1.226 -0.131 -1.182 1.708 sum -8.324 -10.020 8.638 15.630 Atomic orbital electron populations 1.20883 0.90719 1.03069 1.02809 1.19864 0.96071 0.92115 0.97381 1.20881 0.94236 0.97910 1.00865 1.23584 0.94817 1.01249 0.92113 1.19853 0.94077 0.91752 1.05756 1.17791 0.86403 0.82405 0.78171 1.90748 1.67612 1.36716 1.44414 1.47194 1.07543 1.12836 1.63936 1.20519 0.78975 1.01204 0.97975 1.21870 0.98224 1.00906 1.00136 1.20305 0.88363 0.92245 0.95618 1.43540 0.99056 1.85234 1.02917 1.19183 1.04819 1.31940 0.81931 0.91764 1.24931 0.99451 0.97254 0.97634 1.69998 1.16122 1.33921 1.35436 0.86377 0.77304 0.78152 0.85681 1.21410 1.21526 1.20451 1.22213 0.90027 0.94768 0.90603 1.23081 0.97316 0.87521 1.00085 1.18589 0.88915 0.91799 0.96407 1.68231 1.39138 0.97352 1.10082 1.23070 0.91862 0.96274 0.93646 1.21866 0.95664 0.99316 1.03445 1.21438 1.00212 0.91349 0.95643 1.18611 0.93716 0.94258 1.04593 0.90590 0.91358 0.90783 0.84762 0.78825 0.90574 0.92183 0.91150 0.92675 0.93496 0.94784 0.93680 0.93301 0.89613 0.89203 0.91801 0.82682 0.84835 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.53 36.01 0.34 -0.73 16 2 C -0.05 -0.71 5.89 -104.47 -0.62 -1.32 16 3 C -0.12 -1.76 9.56 -40.03 -0.38 -2.14 16 4 C -0.10 -1.72 7.26 -39.16 -0.28 -2.00 16 5 C -0.11 -2.17 5.71 -104.61 -0.60 -2.76 16 6 C 0.56 12.19 7.43 -12.51 -0.09 12.10 16 7 O -0.52 -12.66 15.12 5.28 0.08 -12.58 16 8 N -0.58 -11.30 2.46 -177.74 -0.44 -11.74 16 9 C 0.13 2.38 5.65 -5.92 -0.03 2.35 16 10 C -0.17 -3.19 5.64 -29.13 -0.16 -3.35 16 11 C 0.16 3.31 5.63 -5.23 -0.03 3.28 16 12 N -0.59 -14.02 2.53 -171.78 -0.43 -14.46 16 13 C -0.25 -6.76 9.25 -15.06 -0.14 -6.90 16 14 H 0.06 1.78 7.88 -52.49 -0.41 1.37 16 15 C 0.01 0.14 4.90 -17.43 -0.09 0.05 16 16 N -0.91 -24.97 11.06 55.49 0.61 -24.36 16 17 Si 0.89 22.08 29.58 -169.99 -5.03 17.05 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 C 0.15 3.24 4.47 -1.56 -0.01 3.24 16 22 C 0.05 0.80 4.71 -4.39 -0.02 0.78 16 23 C 0.17 3.07 6.59 -84.58 -0.56 2.51 16 24 N -0.44 -8.19 8.74 -10.76 -0.09 -8.29 16 25 C 0.12 1.72 11.15 -17.44 -0.19 1.52 16 26 C -0.18 -2.02 10.03 -39.79 -0.40 -2.42 16 27 C -0.06 -0.70 9.36 -39.19 -0.37 -1.07 16 28 C -0.11 -1.64 5.74 -106.83 -0.61 -2.25 16 29 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.07 0.51 6.42 -51.93 -0.33 0.17 16 31 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.20 3.50 1.68 -52.53 -0.09 3.42 16 34 H 0.08 1.39 7.24 -51.93 -0.38 1.01 16 35 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 36 H 0.07 1.59 7.91 -51.93 -0.41 1.17 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.97 8.02 -51.93 -0.42 0.56 16 39 H 0.03 0.63 7.59 -51.93 -0.39 0.23 16 40 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 41 H 0.05 1.11 7.99 -51.93 -0.41 0.69 16 42 H 0.09 2.05 4.65 -51.93 -0.24 1.81 16 43 H 0.09 1.44 4.29 -51.94 -0.22 1.22 16 44 H 0.06 1.00 7.72 -51.93 -0.40 0.60 16 45 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 46 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 47 H 0.14 1.13 6.42 -52.49 -0.34 0.79 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -34.01 361.99 -10.22 -44.23 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.14 Total: 3.82 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -4.24 Total: 0.87 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.35 Total: -58.84 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.01 -10.22 -44.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981632020.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.961 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds