Wall clock time and date at job start Tue Mar 31 2020 22:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39306 * 119.11443 * 2 1 4 4 C 1.36584 * 119.90500 * 180.02562 * 3 2 1 5 5 C 1.40883 * 118.16108 * 0.02562 * 4 3 2 6 6 C 1.40185 * 121.23006 * 180.27493 * 5 4 3 7 7 C 1.38548 * 119.39984 * 180.23828 * 6 5 4 8 8 C 1.47769 * 119.80471 * 179.77218 * 7 6 5 9 9 O 1.21564 * 119.99712 * 23.58171 * 8 7 6 10 10 N 1.34778 * 120.00341 * 203.59215 * 8 7 6 11 11 C 1.48207 * 119.96905 * 171.94514 * 10 8 7 12 12 C 1.47145 * 110.34124 * 102.46828 * 11 10 8 13 13 C 1.53795 * 111.84206 * 58.29453 * 12 11 10 14 14 N 1.43462 * 107.95856 * 281.66672 * 13 12 11 15 15 C 1.36938 * 118.94069 * 273.61009 * 14 13 12 16 16 H 1.07992 * 119.99857 * 24.33663 * 15 14 13 17 17 C 1.38815 * 119.99815 * 204.33475 * 15 14 13 18 18 N 1.31618 * 120.00291 * 33.83360 * 17 15 14 19 19 Si 1.86801 * 119.99764 * 213.82845 * 17 15 14 20 20 H 1.48497 * 109.46960 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.46837 * 60.00274 * 19 17 15 22 22 H 1.48500 * 109.47223 * 300.00138 * 19 17 15 23 23 C 1.48862 * 122.12117 * 93.89048 * 14 13 12 24 24 C 1.43626 * 119.96636 * 351.92128 * 10 8 7 25 25 C 1.40634 * 120.39418 * 359.49889 * 7 6 5 26 26 C 1.35698 * 120.91826 * 0.22496 * 25 7 6 27 27 C 1.40748 * 120.11330 * 0.02980 * 26 25 7 28 28 N 1.31117 * 119.11672 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47481 * 89.99643 * 1 2 3 30 30 H 1.08997 * 109.46814 * 209.99941 * 1 2 3 31 31 H 1.09001 * 109.47247 * 329.99398 * 1 2 3 32 32 H 1.08000 * 120.04927 * 0.04922 * 3 2 1 33 33 H 1.08002 * 120.92067 * 180.02562 * 4 3 2 34 34 H 1.07997 * 120.29819 * 359.97438 * 6 5 4 35 35 H 1.08994 * 109.33016 * 342.19979 * 11 10 8 36 36 H 1.09002 * 109.18449 * 222.64101 * 11 10 8 37 37 H 1.09002 * 109.00429 * 297.68537 * 12 11 10 38 38 H 1.09003 * 109.00721 * 178.90214 * 12 11 10 39 39 H 1.09002 * 109.76295 * 162.05197 * 13 12 11 40 40 H 1.09000 * 109.80902 * 41.30568 * 13 12 11 41 41 H 0.97005 * 119.99745 * 5.88600 * 18 17 15 42 42 H 1.09000 * 109.47903 * 80.34527 * 23 14 13 43 43 H 1.08997 * 109.48042 * 200.37637 * 23 14 13 44 44 H 1.08994 * 108.87396 * 31.47107 * 24 10 8 45 45 H 1.09000 * 108.87127 * 149.91147 * 24 10 8 46 46 H 1.08004 * 119.54017 * 180.25631 * 25 7 6 47 47 H 1.08000 * 119.94039 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.2170 0.0000 4 6 3.5505 1.2359 -0.0005 5 6 4.2325 0.0031 -0.0016 6 6 5.6332 -0.0526 0.0035 7 6 6.2649 -1.2857 -0.0028 8 6 7.7409 -1.3549 -0.0025 9 8 8.3930 -0.4218 0.4239 10 7 8.3643 -2.4524 -0.4752 11 6 9.8370 -2.4534 -0.6416 12 6 10.4754 -3.1948 0.4574 13 6 9.9753 -4.6472 0.5342 14 7 8.6872 -4.6386 1.1656 15 6 8.6189 -4.6832 2.5326 16 1 9.4518 -4.3368 3.1263 17 6 7.4792 -5.1736 3.1550 18 7 6.7922 -6.1478 2.5972 19 14 6.9205 -4.4508 4.7844 20 1 5.6872 -5.1435 5.2362 21 1 6.6409 -3.0023 4.6134 22 1 7.9896 -4.6322 5.7990 23 6 7.4221 -4.5890 0.3826 24 6 7.6008 -3.6200 -0.8167 25 6 5.5096 -2.4721 -0.0036 26 6 4.1531 -2.4350 -0.0029 27 6 3.4805 -1.1987 -0.0019 28 7 2.1450 -1.1455 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6312 2.1444 0.0008 33 1 4.0927 2.1700 -0.0001 34 1 6.2147 0.8574 0.0081 35 1 10.2007 -1.4259 -0.6426 36 1 10.0899 -2.9264 -1.5905 37 1 10.2546 -2.6930 1.3995 38 1 11.5545 -3.1986 0.3033 39 1 10.6705 -5.2457 1.1230 40 1 9.8907 -5.0623 -0.4701 41 1 7.1274 -6.5810 1.7966 42 1 7.1827 -5.5869 0.0152 43 1 6.6134 -4.2327 1.0206 44 1 6.6172 -3.3078 -1.1677 45 1 8.1087 -4.1502 -1.6223 46 1 6.0162 -3.4259 -0.0044 47 1 3.5887 -3.3558 -0.0032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982369187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:42 Heat of formation + Delta-G solvation = 93.740596 kcal Electronic energy + Delta-G solvation = -30271.602463 eV Core-core repulsion = 26421.899589 eV Total energy + Delta-G solvation = -3849.702874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.10824 -40.00545 -37.32251 -36.94802 -34.56136 -33.72795 -33.26871 -31.73805 -30.97629 -30.07477 -28.21129 -27.81589 -25.47177 -24.05536 -23.69109 -23.40608 -22.16229 -21.65187 -19.85846 -19.33670 -18.62143 -17.32709 -17.02984 -16.48608 -15.89256 -15.76227 -15.31342 -14.89405 -14.72214 -14.41565 -14.12935 -13.78237 -13.71355 -13.61121 -13.31518 -13.07698 -13.04394 -13.01279 -12.59167 -12.45736 -12.31636 -12.01687 -11.96663 -11.54924 -11.34959 -11.11796 -10.75425 -10.67173 -10.49633 -10.36651 -10.31495 -10.23177 -10.00179 -9.52882 -9.51141 -9.47114 -8.62242 -8.34922 -8.25814 -8.08891 -6.96992 -6.16324 -3.21919 0.27082 0.71136 1.93457 2.55199 3.31887 3.42970 3.49573 3.57464 3.72541 4.08010 4.13580 4.48286 4.56146 4.63607 4.69131 4.74174 4.97001 5.01229 5.14389 5.22558 5.30749 5.35732 5.38891 5.39674 5.42365 5.45853 5.56595 5.73885 5.79243 5.79639 5.84258 5.85826 5.90513 6.02418 6.05268 6.09851 6.28909 6.32097 6.41319 6.42993 6.50802 6.54529 6.71255 6.74591 6.81312 6.89342 7.12243 7.77540 7.90002 8.04063 8.48590 8.51825 9.08045 9.79631 10.18314 11.11444 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011708 B = 0.004228 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.039969 B = 6620.800640 C = 7897.122011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.159 3.841 3 C -0.182 4.182 4 C -0.045 4.045 5 C -0.119 4.119 6 C -0.037 4.037 7 C -0.120 4.120 8 C 0.564 3.436 9 O -0.546 6.546 10 N -0.577 5.577 11 C 0.132 3.868 12 C -0.170 4.170 13 C 0.164 3.836 14 N -0.588 5.588 15 C -0.361 4.361 16 H 0.056 0.944 17 C -0.012 4.012 18 N -0.900 5.900 19 Si 1.041 2.959 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.292 1.292 23 C 0.121 3.879 24 C 0.053 3.947 25 C -0.119 4.119 26 C -0.101 4.101 27 C 0.148 3.852 28 N -0.477 5.477 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.032 0.968 41 H 0.267 0.733 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.068 0.932 46 H 0.192 0.808 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.041 11.320 -10.733 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.006 3.994 3 C -0.202 4.202 4 C -0.070 4.070 5 C -0.121 4.121 6 C -0.056 4.056 7 C -0.123 4.123 8 C 0.353 3.647 9 O -0.425 6.425 10 N -0.307 5.307 11 C 0.011 3.989 12 C -0.211 4.211 13 C 0.036 3.964 14 N -0.310 5.310 15 C -0.490 4.490 16 H 0.074 0.926 17 C -0.215 4.215 18 N -0.539 5.539 19 Si 0.870 3.130 20 H -0.210 1.210 21 H -0.220 1.220 22 H -0.219 1.219 23 C -0.005 4.005 24 C -0.073 4.073 25 C -0.137 4.137 26 C -0.120 4.120 27 C 0.027 3.973 28 N -0.186 5.186 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.102 0.898 44 H 0.116 0.884 45 H 0.087 0.913 46 H 0.208 0.792 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.239 10.866 -9.370 16.546 hybrid contribution 1.786 0.852 -0.910 2.178 sum -6.454 11.718 -10.280 16.871 Atomic orbital electron populations 1.20779 0.88714 1.03684 1.03175 1.21523 0.97139 0.88291 0.92449 1.21653 0.94936 0.99176 1.04462 1.21504 0.94468 0.97177 0.93898 1.18744 0.94315 0.94268 1.04797 1.21314 0.92273 0.97650 0.94410 1.19967 0.93608 0.94103 1.04605 1.18137 0.86943 0.82393 0.77233 1.90714 1.66983 1.38485 1.46323 1.47165 1.07552 1.12340 1.63620 1.20600 0.78658 1.01396 0.98273 1.21840 0.98449 1.00820 0.99987 1.20300 0.88047 0.92557 0.95527 1.43609 0.98795 1.85542 1.03101 1.19846 1.05844 1.41661 0.81642 0.92620 1.25569 0.96775 0.95413 1.03746 1.70853 1.43862 1.17342 1.21831 0.83886 0.76495 0.76374 0.76231 1.21009 1.22028 1.21853 1.22434 0.90867 0.95426 0.91739 1.22925 0.97420 0.87683 0.99241 1.23077 0.94556 1.01336 0.94760 1.20787 0.93896 0.96486 1.00790 1.19022 0.88918 0.93070 0.96280 1.67902 1.08489 1.28651 1.13580 0.90204 0.90198 0.90595 0.84618 0.84245 0.84276 0.90364 0.91882 0.90957 0.92487 0.93307 0.94991 0.92212 0.94153 0.89831 0.88379 0.91321 0.79233 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.14 36.01 0.37 -0.50 16 2 C 0.16 1.91 6.78 -82.50 -0.56 1.35 16 3 C -0.18 -1.89 9.64 -39.78 -0.38 -2.27 16 4 C -0.04 -0.52 9.89 -39.18 -0.39 -0.90 16 5 C -0.12 -1.77 5.74 -106.82 -0.61 -2.38 16 6 C -0.04 -0.58 9.34 -38.74 -0.36 -0.94 16 7 C -0.12 -2.12 5.68 -104.98 -0.60 -2.72 16 8 C 0.56 11.04 7.50 -12.36 -0.09 10.95 16 9 O -0.55 -11.97 16.05 5.31 0.09 -11.88 16 10 N -0.58 -10.35 2.46 -178.35 -0.44 -10.79 16 11 C 0.13 2.16 5.65 -5.91 -0.03 2.13 16 12 C -0.17 -3.06 5.64 -29.13 -0.16 -3.22 16 13 C 0.16 3.25 5.63 -5.24 -0.03 3.22 16 14 N -0.59 -13.73 2.41 -171.78 -0.41 -14.15 16 15 C -0.36 -9.83 9.06 -15.06 -0.14 -9.96 16 16 H 0.06 1.58 8.02 -52.49 -0.42 1.16 16 17 C -0.01 -0.32 4.39 -17.43 -0.08 -0.40 16 18 N -0.90 -25.64 12.66 55.49 0.70 -24.93 16 19 Si 1.04 25.68 30.03 -169.99 -5.10 20.58 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 C 0.12 2.53 4.42 -1.56 -0.01 2.52 16 24 C 0.05 0.87 4.70 -4.39 -0.02 0.85 16 25 C -0.12 -2.03 7.06 -39.59 -0.28 -2.31 16 26 C -0.10 -1.65 9.95 -39.54 -0.39 -2.04 16 27 C 0.15 2.39 6.61 -84.78 -0.56 1.83 16 28 N -0.48 -7.23 10.23 -7.17 -0.07 -7.31 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 32 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.14 2.00 7.80 -52.49 -0.41 1.59 16 35 H 0.08 1.30 7.23 -51.93 -0.38 0.92 16 36 H 0.06 0.86 8.05 -51.93 -0.42 0.44 16 37 H 0.07 1.59 7.91 -51.93 -0.41 1.18 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 1.01 8.02 -51.93 -0.42 0.59 16 40 H 0.03 0.57 7.59 -51.93 -0.39 0.17 16 41 H 0.27 7.58 7.00 -40.82 -0.29 7.29 16 42 H 0.04 0.85 7.38 -51.93 -0.38 0.47 16 43 H 0.08 1.95 4.92 -51.93 -0.26 1.70 16 44 H 0.10 1.47 4.28 -52.00 -0.22 1.25 16 45 H 0.07 1.00 7.73 -51.93 -0.40 0.59 16 46 H 0.19 3.35 1.60 -53.46 -0.09 3.26 16 47 H 0.14 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 367.17 15.07 5.53 5.53 Total: -1.00 -33.11 367.17 -10.27 -43.38 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.23 Total: 4.39 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -4.33 Total: -4.82 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.22 Total: -57.18 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.10 Total: 20.58 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.11 -10.27 -43.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982369187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.121 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds