Wall clock time and date at job start Tue Mar 31 2020 22:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39306 * 119.11443 * 2 1 4 4 C 1.36584 * 119.90500 * 180.02562 * 3 2 1 5 5 C 1.40883 * 118.16108 * 0.02562 * 4 3 2 6 6 C 1.40185 * 121.23006 * 180.27493 * 5 4 3 7 7 C 1.38548 * 119.39984 * 180.23828 * 6 5 4 8 8 C 1.47769 * 119.80471 * 179.77218 * 7 6 5 9 9 O 1.21564 * 119.99712 * 23.58171 * 8 7 6 10 10 N 1.34778 * 120.00341 * 203.59215 * 8 7 6 11 11 C 1.48207 * 119.96905 * 171.94514 * 10 8 7 12 12 C 1.47145 * 110.34124 * 102.46828 * 11 10 8 13 13 C 1.53795 * 111.84206 * 58.29453 * 12 11 10 14 14 N 1.43462 * 107.95856 * 281.66672 * 13 12 11 15 15 C 1.36938 * 118.94069 * 273.61009 * 14 13 12 16 16 H 1.07992 * 119.99857 * 24.33663 * 15 14 13 17 17 C 1.38815 * 119.99815 * 204.33475 * 15 14 13 18 18 N 1.31618 * 120.00291 * 33.83360 * 17 15 14 19 19 Si 1.86801 * 119.99764 * 213.82845 * 17 15 14 20 20 H 1.48497 * 109.46960 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.46837 * 60.00274 * 19 17 15 22 22 H 1.48500 * 109.47223 * 300.00138 * 19 17 15 23 23 C 1.48862 * 122.12117 * 93.89048 * 14 13 12 24 24 C 1.43626 * 119.96636 * 351.92128 * 10 8 7 25 25 C 1.40634 * 120.39418 * 359.49889 * 7 6 5 26 26 C 1.35698 * 120.91826 * 0.22496 * 25 7 6 27 27 C 1.40748 * 120.11330 * 0.02980 * 26 25 7 28 28 N 1.31117 * 119.11672 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47481 * 89.99643 * 1 2 3 30 30 H 1.08997 * 109.46814 * 209.99941 * 1 2 3 31 31 H 1.09001 * 109.47247 * 329.99398 * 1 2 3 32 32 H 1.08000 * 120.04927 * 0.04922 * 3 2 1 33 33 H 1.08002 * 120.92067 * 180.02562 * 4 3 2 34 34 H 1.07997 * 120.29819 * 359.97438 * 6 5 4 35 35 H 1.08994 * 109.33016 * 342.19979 * 11 10 8 36 36 H 1.09002 * 109.18449 * 222.64101 * 11 10 8 37 37 H 1.09002 * 109.00429 * 297.68537 * 12 11 10 38 38 H 1.09003 * 109.00721 * 178.90214 * 12 11 10 39 39 H 1.09002 * 109.76295 * 162.05197 * 13 12 11 40 40 H 1.09000 * 109.80902 * 41.30568 * 13 12 11 41 41 H 0.97005 * 119.99745 * 5.88600 * 18 17 15 42 42 H 1.09000 * 109.47903 * 80.34527 * 23 14 13 43 43 H 1.08997 * 109.48042 * 200.37637 * 23 14 13 44 44 H 1.08994 * 108.87396 * 31.47107 * 24 10 8 45 45 H 1.09000 * 108.87127 * 149.91147 * 24 10 8 46 46 H 1.08004 * 119.54017 * 180.25631 * 25 7 6 47 47 H 1.08000 * 119.94039 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.2170 0.0000 4 6 3.5505 1.2359 -0.0005 5 6 4.2325 0.0031 -0.0016 6 6 5.6332 -0.0526 0.0035 7 6 6.2649 -1.2857 -0.0028 8 6 7.7409 -1.3549 -0.0025 9 8 8.3930 -0.4218 0.4239 10 7 8.3643 -2.4524 -0.4752 11 6 9.8370 -2.4534 -0.6416 12 6 10.4754 -3.1948 0.4574 13 6 9.9753 -4.6472 0.5342 14 7 8.6872 -4.6386 1.1656 15 6 8.6189 -4.6832 2.5326 16 1 9.4518 -4.3368 3.1263 17 6 7.4792 -5.1736 3.1550 18 7 6.7922 -6.1478 2.5972 19 14 6.9205 -4.4508 4.7844 20 1 5.6872 -5.1435 5.2362 21 1 6.6409 -3.0023 4.6134 22 1 7.9896 -4.6322 5.7990 23 6 7.4221 -4.5890 0.3826 24 6 7.6008 -3.6200 -0.8167 25 6 5.5096 -2.4721 -0.0036 26 6 4.1531 -2.4350 -0.0029 27 6 3.4805 -1.1987 -0.0019 28 7 2.1450 -1.1455 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6312 2.1444 0.0008 33 1 4.0927 2.1700 -0.0001 34 1 6.2147 0.8574 0.0081 35 1 10.2007 -1.4259 -0.6426 36 1 10.0899 -2.9264 -1.5905 37 1 10.2546 -2.6930 1.3995 38 1 11.5545 -3.1986 0.3033 39 1 10.6705 -5.2457 1.1230 40 1 9.8907 -5.0623 -0.4701 41 1 7.1274 -6.5810 1.7966 42 1 7.1827 -5.5869 0.0152 43 1 6.6134 -4.2327 1.0206 44 1 6.6172 -3.3078 -1.1677 45 1 8.1087 -4.1502 -1.6223 46 1 6.0162 -3.4259 -0.0044 47 1 3.5887 -3.3558 -0.0032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982369187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:41 Heat of formation + Delta-G solvation = 74.535701 kcal Electronic energy + Delta-G solvation = -30272.435249 eV Core-core repulsion = 26421.899589 eV Total energy + Delta-G solvation = -3850.535661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.31301 -41.26722 -38.88564 -38.18260 -36.25677 -35.01958 -34.44093 -33.12196 -32.52443 -31.26365 -29.55142 -29.06632 -27.06549 -25.68315 -24.91563 -24.72750 -23.21569 -22.98993 -21.57461 -20.62651 -19.99046 -19.05153 -18.37945 -17.75560 -17.16689 -16.99299 -16.74388 -16.33680 -15.87595 -15.73191 -15.53384 -15.48363 -15.11827 -14.91760 -14.82111 -14.54861 -14.11971 -14.00174 -13.92963 -13.75303 -13.51425 -13.10358 -13.05081 -12.98794 -12.87636 -12.62570 -12.47605 -12.12628 -12.04404 -11.99278 -11.87263 -11.68337 -11.56524 -11.41553 -10.91354 -10.52161 -10.35378 -9.77491 -9.69163 -9.31288 -8.91486 -8.29281 -5.32364 -0.82667 -0.38380 0.83162 1.34337 1.47534 1.54178 1.72496 1.97696 2.12740 2.57615 2.97195 3.06439 3.15366 3.33715 3.50456 3.54792 3.66503 3.83874 3.91924 3.99801 4.00690 4.05014 4.08270 4.26545 4.33398 4.37992 4.43537 4.54638 4.60919 4.66802 4.76416 4.79349 4.81462 4.84168 4.90708 4.92860 4.95275 4.97508 5.07758 5.15684 5.17986 5.19909 5.21791 5.40404 5.49302 5.64847 5.74520 5.88043 6.33172 6.41157 6.89816 7.03504 7.09584 7.80169 8.17727 8.95116 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011708 B = 0.004228 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.039969 B = 6620.800640 C = 7897.122011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.158 3.842 3 C -0.170 4.170 4 C -0.046 4.046 5 C -0.135 4.135 6 C -0.026 4.026 7 C -0.150 4.150 8 C 0.557 3.443 9 O -0.580 6.580 10 N -0.578 5.578 11 C 0.127 3.873 12 C -0.155 4.155 13 C 0.159 3.841 14 N -0.603 5.603 15 C -0.361 4.361 16 H 0.034 0.966 17 C -0.050 4.050 18 N -0.919 5.919 19 Si 1.076 2.924 20 H -0.285 1.285 21 H -0.300 1.300 22 H -0.277 1.277 23 C 0.126 3.874 24 C 0.063 3.937 25 C -0.126 4.126 26 C -0.112 4.112 27 C 0.132 3.868 28 N -0.513 5.513 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.182 0.818 33 H 0.173 0.827 34 H 0.151 0.849 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.024 0.976 38 H 0.089 0.911 39 H 0.034 0.966 40 H 0.063 0.937 41 H 0.260 0.740 42 H 0.036 0.964 43 H 0.054 0.946 44 H 0.116 0.884 45 H 0.101 0.899 46 H 0.182 0.818 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.372 13.601 -12.297 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.005 3.995 3 C -0.189 4.189 4 C -0.071 4.071 5 C -0.137 4.137 6 C -0.046 4.046 7 C -0.153 4.153 8 C 0.347 3.653 9 O -0.463 6.463 10 N -0.307 5.307 11 C 0.007 3.993 12 C -0.196 4.196 13 C 0.032 3.968 14 N -0.326 5.326 15 C -0.491 4.491 16 H 0.052 0.948 17 C -0.250 4.250 18 N -0.559 5.559 19 Si 0.904 3.096 20 H -0.210 1.210 21 H -0.228 1.228 22 H -0.203 1.203 23 C 0.001 3.999 24 C -0.062 4.062 25 C -0.145 4.145 26 C -0.130 4.130 27 C 0.011 3.989 28 N -0.223 5.223 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.199 0.801 33 H 0.190 0.810 34 H 0.168 0.832 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.043 0.957 38 H 0.107 0.893 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.134 0.866 45 H 0.119 0.881 46 H 0.198 0.802 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.548 13.133 -10.959 19.589 hybrid contribution 2.069 0.250 -0.443 2.131 sum -7.479 13.382 -11.402 19.106 Atomic orbital electron populations 1.20932 0.85945 1.04791 1.04561 1.22360 0.99073 0.88191 0.89860 1.22157 0.94640 1.00268 1.01865 1.21930 0.95285 0.96999 0.92874 1.18964 0.93910 0.95460 1.05364 1.21502 0.92964 0.97321 0.92815 1.19929 0.92691 0.95131 1.07548 1.18519 0.87750 0.82388 0.76631 1.90673 1.67843 1.39726 1.48013 1.47319 1.08356 1.12146 1.62856 1.20778 0.77656 1.01513 0.99358 1.21652 1.00626 0.98933 0.98346 1.20467 0.86231 0.93630 0.96485 1.43801 1.00813 1.85783 1.02200 1.19900 1.05159 1.40268 0.83777 0.94825 1.26341 0.97285 0.95673 1.05741 1.70923 1.44310 1.18471 1.22225 0.83353 0.76508 0.75251 0.74486 1.21027 1.22757 1.20325 1.22365 0.88950 0.96174 0.92448 1.22802 0.99004 0.86658 0.97745 1.22885 0.94832 1.00789 0.95984 1.20852 0.93745 0.97195 1.01237 1.19158 0.89803 0.93297 0.96632 1.67948 1.08017 1.30659 1.15721 0.88466 0.91124 0.87474 0.80061 0.80953 0.83182 0.90543 0.87725 0.95739 0.89299 0.94745 0.91898 0.93062 0.94624 0.92824 0.86637 0.88097 0.80157 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.14 71.24 0.72 -0.63 16 2 C 0.16 3.35 6.78 42.92 0.29 3.64 16 3 C -0.17 -2.81 9.64 22.14 0.21 -2.59 16 4 C -0.05 -0.91 9.89 22.53 0.22 -0.69 16 5 C -0.13 -3.87 5.74 -21.29 -0.12 -3.99 16 6 C -0.03 -0.83 9.34 22.82 0.21 -0.61 16 7 C -0.15 -5.44 5.68 -20.10 -0.11 -5.56 16 8 C 0.56 22.17 7.50 86.76 0.65 22.82 16 9 O -0.58 -26.02 16.05 -3.92 -0.06 -26.08 16 10 N -0.58 -20.50 2.46 -836.44 -2.06 -22.56 16 11 C 0.13 3.97 5.65 84.23 0.48 4.45 16 12 C -0.15 -5.47 5.64 29.04 0.16 -5.31 16 13 C 0.16 6.21 5.63 87.21 0.49 6.70 16 14 N -0.60 -28.72 2.41 -697.38 -1.68 -30.40 16 15 C -0.36 -20.34 9.06 84.03 0.76 -19.58 16 16 H 0.03 2.01 8.02 -2.91 -0.02 1.98 16 17 C -0.05 -2.88 4.39 84.86 0.37 -2.50 16 18 N -0.92 -53.90 12.66 21.65 0.27 -53.63 16 19 Si 1.08 53.59 30.03 68.60 2.06 55.65 16 20 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 21 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 C 0.13 5.37 4.42 86.68 0.38 5.75 16 24 C 0.06 2.03 4.70 87.67 0.41 2.45 16 25 C -0.13 -4.50 7.06 22.27 0.16 -4.34 16 26 C -0.11 -3.80 9.95 22.29 0.22 -3.58 16 27 C 0.13 4.26 6.61 40.35 0.27 4.53 16 28 N -0.51 -15.18 10.23 -176.59 -1.81 -16.99 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 0.73 8.07 -2.39 -0.02 0.71 16 32 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.15 4.23 7.80 -2.91 -0.02 4.21 16 35 H 0.08 2.45 7.23 -2.39 -0.02 2.43 16 36 H 0.10 2.44 8.05 -2.39 -0.02 2.42 16 37 H 0.02 1.08 7.91 -2.39 -0.02 1.07 16 38 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.03 1.43 8.02 -2.39 -0.02 1.41 16 40 H 0.06 2.08 7.59 -2.39 -0.02 2.06 16 41 H 0.26 15.19 7.00 -92.70 -0.65 14.54 16 42 H 0.04 1.54 7.38 -2.39 -0.02 1.52 16 43 H 0.05 2.63 4.92 -2.39 -0.01 2.62 16 44 H 0.12 3.46 4.28 -2.46 -0.01 3.45 16 45 H 0.10 2.64 7.73 -2.39 -0.02 2.63 16 46 H 0.18 6.66 1.60 -3.83 -0.01 6.65 16 47 H 0.14 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -76.48 367.17 3.63 -72.85 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 1.12 Total: 20.21 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 5.78 Total: 0.95 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -5.27 Total: -123.58 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.06 Total: -26.08 kcal Atomic # 14 Polarization: 53.59 SS G_CDS: 2.06 Total: 55.65 kcal Total: -76.48 3.63 -72.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982369187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.387 kcal (2) G-P(sol) polarization free energy of solvation -76.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds