Wall clock time and date at job start Tue Mar 31 2020 22:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36616 * 120.92174 * 2 1 4 4 C 1.39270 * 119.90618 * 180.02562 * 3 2 1 5 5 N 1.31143 * 121.77342 * 0.02562 * 4 3 2 6 6 C 1.33624 * 121.39502 * 359.97409 * 5 4 3 7 7 C 1.40769 * 120.84905 * 179.97438 * 6 5 4 8 8 C 1.35694 * 120.11208 * 180.02562 * 7 6 5 9 9 C 1.40637 * 120.92923 * 359.95139 * 8 7 6 10 10 C 1.47767 * 119.80230 * 179.97438 * 9 8 7 11 11 O 1.21558 * 120.00358 * 213.08559 * 10 9 8 12 12 N 1.34783 * 119.99832 * 33.08985 * 10 9 8 13 13 C 1.47424 * 125.64847 * 356.51462 * 12 10 9 14 14 C 1.54913 * 104.83303 * 155.83367 * 13 12 10 15 15 C 1.55154 * 101.58002 * 37.00531 * 14 13 12 16 16 H 1.08999 * 110.72166 * 83.04269 * 15 14 13 17 17 N 1.46507 * 110.71923 * 206.13371 * 15 14 13 18 18 C 1.36935 * 120.00111 * 273.54985 * 17 15 14 19 19 H 1.08005 * 119.99832 * 359.97438 * 18 17 15 20 20 C 1.38809 * 119.99917 * 180.02562 * 18 17 15 21 21 N 1.31614 * 120.00263 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99884 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47188 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.47530 * 300.00167 * 22 20 18 25 25 H 1.48505 * 109.46834 * 60.00134 * 22 20 18 26 26 C 1.47020 * 125.64549 * 176.46455 * 12 10 9 27 27 H 1.09002 * 109.88085 * 61.68461 * 26 12 10 28 28 C 1.52995 * 109.88771 * 300.51403 * 26 12 10 29 29 C 1.38540 * 120.39545 * 0.28056 * 9 8 7 30 30 C 1.40193 * 119.39891 * 359.51523 * 29 9 8 31 31 H 1.09007 * 109.46497 * 90.00195 * 1 2 3 32 32 H 1.08993 * 109.46735 * 209.99630 * 1 2 3 33 33 H 1.08997 * 109.46937 * 330.00192 * 1 2 3 34 34 H 1.08001 * 120.04650 * 0.04379 * 3 2 1 35 35 H 1.07995 * 119.11322 * 179.97438 * 4 3 2 36 36 H 1.08002 * 119.94203 * 0.02562 * 7 6 5 37 37 H 1.08002 * 119.53446 * 179.97438 * 8 7 6 38 38 H 1.08998 * 110.37078 * 36.99370 * 13 12 10 39 39 H 1.09002 * 110.36372 * 274.66875 * 13 12 10 40 40 H 1.08997 * 111.00050 * 278.93407 * 14 13 12 41 41 H 1.08996 * 111.03614 * 155.09792 * 14 13 12 42 42 H 0.96996 * 119.99868 * 93.54956 * 17 15 14 43 43 H 0.97000 * 120.00378 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.46976 * 302.19420 * 28 26 12 45 45 H 1.09005 * 109.47022 * 62.19315 * 28 26 12 46 46 H 1.08997 * 109.47526 * 182.19347 * 28 26 12 47 47 H 1.07991 * 120.30175 * 179.72122 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6015 1.1473 -0.0005 5 7 4.2722 0.0204 -0.0016 6 6 3.6480 -1.1612 -0.0016 7 6 4.3794 -2.3639 -0.0032 8 6 3.7302 -3.5555 -0.0038 9 6 2.3250 -3.6130 -0.0017 10 6 1.6437 -4.9242 -0.0030 11 8 0.5799 -5.0559 -0.5762 12 7 2.2017 -5.9742 0.6316 13 6 3.5151 -5.9744 1.3012 14 6 3.4247 -7.1096 2.3515 15 6 2.5840 -8.1699 1.5924 16 1 3.2176 -8.7674 0.9369 17 7 1.8601 -9.0281 2.5336 18 6 2.4688 -10.1383 3.0553 19 1 3.4825 -10.3814 2.7727 20 6 1.7827 -10.9517 3.9466 21 7 0.5469 -10.6563 4.2899 22 14 2.6129 -12.4664 4.6578 23 1 1.6748 -13.1594 5.5770 24 1 2.9954 -13.3849 3.5554 25 1 3.8286 -12.0588 5.4069 26 6 1.6010 -7.3088 0.7716 27 1 1.4515 -7.7531 -0.2125 28 6 0.2633 -7.2029 1.5065 29 6 1.5757 -2.4477 -0.0049 30 6 2.2308 -1.2083 0.0001 31 1 -0.3632 0.0000 -1.0278 32 1 -0.3632 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6849 2.1163 0.0007 35 1 4.1436 2.0814 -0.0010 36 1 5.4591 -2.3382 -0.0041 37 1 4.3006 -4.4726 -0.0055 38 1 3.6911 -5.0170 1.7917 39 1 4.3072 -6.1847 0.5826 40 1 2.9078 -6.7708 3.2493 41 1 4.4140 -7.4967 2.5953 42 1 0.9496 -8.8100 2.7871 43 1 0.0676 -11.2245 4.9130 44 1 0.4197 -6.7401 2.4809 45 1 -0.4256 -6.5936 0.9213 46 1 -0.1574 -8.1994 1.6409 47 1 0.4968 -2.4937 -0.0079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986312431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:35 Heat of formation + Delta-G solvation = 46.249568 kcal Electronic energy + Delta-G solvation = -28864.301545 eV Core-core repulsion = 25012.539305 eV Total energy + Delta-G solvation = -3851.762240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.31036 -40.09502 -37.79351 -36.81906 -35.02180 -34.25044 -32.01345 -30.93436 -30.69901 -30.59059 -28.90672 -28.12926 -25.36224 -25.00795 -23.96836 -23.34746 -22.61696 -21.35323 -20.28959 -19.03259 -18.49979 -17.59823 -17.33767 -16.89654 -16.05790 -15.70346 -15.39030 -14.94526 -14.75606 -14.61144 -14.48492 -14.07323 -13.98846 -13.68850 -13.45745 -13.36209 -13.17180 -12.94514 -12.78338 -12.51912 -12.23354 -12.07106 -11.92967 -11.83718 -11.60080 -11.41444 -11.22692 -10.99688 -10.81605 -10.49948 -10.48761 -10.27000 -10.03546 -9.84037 -9.78535 -9.62365 -9.08555 -8.96008 -8.58644 -8.38081 -7.05236 -5.83839 -3.13871 -0.02755 0.40970 1.62456 2.27656 2.95899 3.18485 3.40194 3.45079 3.45957 3.80763 3.96048 4.15976 4.27804 4.37123 4.44929 4.53141 4.73695 4.78322 4.86122 5.02180 5.03177 5.12657 5.16575 5.19258 5.31358 5.35958 5.46601 5.54839 5.58030 5.59077 5.63217 5.68797 5.74990 5.78119 5.96930 5.99011 6.06880 6.08918 6.18247 6.20460 6.28337 6.47374 6.51470 6.53344 6.67053 6.79055 6.94972 7.58983 7.63586 7.66186 8.22401 8.34676 9.46228 10.00849 10.35776 11.38536 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023491 B = 0.002344 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.652400 B =11943.691224 C =12485.343826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.012 4.012 3 C -0.188 4.188 4 C 0.141 3.859 5 N -0.482 5.482 6 C 0.144 3.856 7 C -0.099 4.099 8 C -0.081 4.081 9 C -0.120 4.120 10 C 0.570 3.430 11 O -0.537 6.537 12 N -0.601 5.601 13 C 0.091 3.909 14 C -0.154 4.154 15 C 0.174 3.826 16 H 0.064 0.936 17 N -0.717 5.717 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.291 1.291 24 H -0.285 1.285 25 H -0.286 1.286 26 C 0.129 3.871 27 H 0.074 0.926 28 C -0.159 4.159 29 C -0.035 4.035 30 C -0.111 4.111 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.138 0.862 35 H 0.160 0.840 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.391 0.609 43 H 0.257 0.743 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.081 0.919 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.769 23.774 -9.134 25.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.020 4.020 3 C -0.208 4.208 4 C -0.031 4.031 5 N -0.191 5.191 6 C 0.022 3.978 7 C -0.118 4.118 8 C -0.101 4.101 9 C -0.123 4.123 10 C 0.359 3.641 11 O -0.415 6.415 12 N -0.333 5.333 13 C -0.032 4.032 14 C -0.196 4.196 15 C 0.062 3.938 16 H 0.082 0.918 17 N -0.361 5.361 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.206 4.206 21 N -0.579 5.579 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.212 1.212 25 H -0.212 1.212 26 C 0.026 3.974 27 H 0.092 0.908 28 C -0.217 4.217 29 C -0.055 4.055 30 C -0.113 4.113 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.156 0.844 35 H 0.177 0.823 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.229 0.771 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.162 23.453 -9.405 25.791 hybrid contribution -0.599 -0.657 0.607 1.076 sum 4.563 22.797 -8.798 24.858 Atomic orbital electron populations 1.20949 0.89728 1.03971 1.03523 1.20257 0.96823 0.92012 0.92930 1.21755 0.95627 0.98768 1.04610 1.22977 0.91521 0.96470 0.92146 1.68066 1.39902 0.97711 1.13394 1.18995 0.89538 0.92586 0.96645 1.20690 1.00561 0.89693 1.00854 1.21377 0.93210 0.99067 0.96412 1.19950 0.93981 0.93598 1.04730 1.17822 0.84588 0.82889 0.78836 1.90773 1.22233 1.84093 1.44442 1.48493 1.19947 1.11439 1.53458 1.22683 0.84648 1.00590 0.95309 1.23590 1.02206 0.95806 0.97978 1.21189 0.91560 0.90060 0.91017 0.91804 1.42674 1.15770 1.27217 1.50414 1.19185 0.97404 1.00744 1.20290 0.91095 1.24755 0.96275 0.99390 1.00230 1.69643 1.10414 1.40014 1.37817 0.86249 0.78231 0.82864 0.78691 1.21693 1.21192 1.21221 1.21863 0.94700 0.81266 0.99615 0.90785 1.22003 0.96326 1.03268 1.00090 1.21380 1.00448 0.89696 0.93984 1.18649 0.94120 0.93876 1.04623 0.89810 0.90370 0.90416 0.84423 0.82310 0.84118 0.83826 0.90750 0.91259 0.90575 0.90424 0.77080 0.93302 0.92456 0.92250 0.89997 0.83992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 9.59 36.01 0.35 -0.47 16 2 C -0.01 -0.11 5.92 -104.22 -0.62 -0.73 16 3 C -0.19 -1.39 9.72 -39.78 -0.39 -1.78 16 4 C 0.14 1.17 11.14 -17.46 -0.19 0.97 16 5 N -0.48 -5.39 10.33 -10.92 -0.11 -5.50 16 6 C 0.14 1.69 6.61 -84.77 -0.56 1.13 16 7 C -0.10 -1.06 9.95 -39.54 -0.39 -1.45 16 8 C -0.08 -0.88 7.79 -39.59 -0.31 -1.19 16 9 C -0.12 -1.56 5.58 -104.99 -0.59 -2.14 16 10 C 0.57 8.97 7.31 -12.36 -0.09 8.88 16 11 O -0.54 -10.03 15.77 5.31 0.08 -9.94 16 12 N -0.60 -9.17 3.08 -164.15 -0.51 -9.67 16 13 C 0.09 1.16 5.07 -2.53 -0.01 1.14 16 14 C -0.15 -2.45 6.77 -24.58 -0.17 -2.62 16 15 C 0.17 3.25 3.46 -66.09 -0.23 3.02 16 16 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 17 N -0.72 -17.02 5.02 -51.65 -0.26 -17.28 16 18 C -0.25 -6.48 9.98 -15.06 -0.15 -6.63 16 19 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 22 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 26 C 0.13 2.25 3.46 -66.95 -0.23 2.01 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 C -0.16 -2.94 7.95 37.16 0.30 -2.64 16 29 C -0.04 -0.43 8.88 -38.74 -0.34 -0.77 16 30 C -0.11 -1.25 5.74 -106.82 -0.61 -1.86 16 31 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.08 0.55 6.52 -51.93 -0.34 0.21 16 33 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 34 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.14 1.34 5.09 -52.49 -0.27 1.07 16 38 H 0.07 0.85 6.49 -51.93 -0.34 0.51 16 39 H 0.07 0.73 7.18 -51.93 -0.37 0.36 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.39 9.84 4.92 -40.82 -0.20 9.64 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.06 1.08 8.08 -51.93 -0.42 0.67 16 45 H 0.06 1.09 6.87 -51.93 -0.36 0.73 16 46 H 0.08 1.65 6.67 -51.93 -0.35 1.30 16 47 H 0.14 1.62 6.33 -52.49 -0.33 1.29 16 LS Contribution 375.82 15.07 5.66 5.66 Total: -1.00 -32.47 375.82 -10.09 -42.56 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.32 Total: 9.55 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -4.34 Total: -5.50 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.15 Total: -59.05 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.47 -10.09 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986312431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.807 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds