Wall clock time and date at job start Tue Mar 31 2020 22:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36616 * 120.92174 * 2 1 4 4 C 1.39270 * 119.90618 * 180.02562 * 3 2 1 5 5 N 1.31143 * 121.77342 * 0.02562 * 4 3 2 6 6 C 1.33624 * 121.39502 * 359.97409 * 5 4 3 7 7 C 1.40769 * 120.84905 * 179.97438 * 6 5 4 8 8 C 1.35694 * 120.11208 * 180.02562 * 7 6 5 9 9 C 1.40637 * 120.92923 * 359.95139 * 8 7 6 10 10 C 1.47767 * 119.80230 * 179.97438 * 9 8 7 11 11 O 1.21558 * 120.00358 * 213.08559 * 10 9 8 12 12 N 1.34783 * 119.99832 * 33.08985 * 10 9 8 13 13 C 1.47424 * 125.64847 * 356.51462 * 12 10 9 14 14 C 1.54913 * 104.83303 * 155.83367 * 13 12 10 15 15 C 1.55154 * 101.58002 * 37.00531 * 14 13 12 16 16 H 1.08999 * 110.72166 * 83.04269 * 15 14 13 17 17 N 1.46507 * 110.71923 * 206.13371 * 15 14 13 18 18 C 1.36935 * 120.00111 * 273.54985 * 17 15 14 19 19 H 1.08005 * 119.99832 * 359.97438 * 18 17 15 20 20 C 1.38809 * 119.99917 * 180.02562 * 18 17 15 21 21 N 1.31614 * 120.00263 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99884 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47188 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.47530 * 300.00167 * 22 20 18 25 25 H 1.48505 * 109.46834 * 60.00134 * 22 20 18 26 26 C 1.47020 * 125.64549 * 176.46455 * 12 10 9 27 27 H 1.09002 * 109.88085 * 61.68461 * 26 12 10 28 28 C 1.52995 * 109.88771 * 300.51403 * 26 12 10 29 29 C 1.38540 * 120.39545 * 0.28056 * 9 8 7 30 30 C 1.40193 * 119.39891 * 359.51523 * 29 9 8 31 31 H 1.09007 * 109.46497 * 90.00195 * 1 2 3 32 32 H 1.08993 * 109.46735 * 209.99630 * 1 2 3 33 33 H 1.08997 * 109.46937 * 330.00192 * 1 2 3 34 34 H 1.08001 * 120.04650 * 0.04379 * 3 2 1 35 35 H 1.07995 * 119.11322 * 179.97438 * 4 3 2 36 36 H 1.08002 * 119.94203 * 0.02562 * 7 6 5 37 37 H 1.08002 * 119.53446 * 179.97438 * 8 7 6 38 38 H 1.08998 * 110.37078 * 36.99370 * 13 12 10 39 39 H 1.09002 * 110.36372 * 274.66875 * 13 12 10 40 40 H 1.08997 * 111.00050 * 278.93407 * 14 13 12 41 41 H 1.08996 * 111.03614 * 155.09792 * 14 13 12 42 42 H 0.96996 * 119.99868 * 93.54956 * 17 15 14 43 43 H 0.97000 * 120.00378 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.46976 * 302.19420 * 28 26 12 45 45 H 1.09005 * 109.47022 * 62.19315 * 28 26 12 46 46 H 1.08997 * 109.47526 * 182.19347 * 28 26 12 47 47 H 1.07991 * 120.30175 * 179.72122 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6015 1.1473 -0.0005 5 7 4.2722 0.0204 -0.0016 6 6 3.6480 -1.1612 -0.0016 7 6 4.3794 -2.3639 -0.0032 8 6 3.7302 -3.5555 -0.0038 9 6 2.3250 -3.6130 -0.0017 10 6 1.6437 -4.9242 -0.0030 11 8 0.5799 -5.0559 -0.5762 12 7 2.2017 -5.9742 0.6316 13 6 3.5151 -5.9744 1.3012 14 6 3.4247 -7.1096 2.3515 15 6 2.5840 -8.1699 1.5924 16 1 3.2176 -8.7674 0.9369 17 7 1.8601 -9.0281 2.5336 18 6 2.4688 -10.1383 3.0553 19 1 3.4825 -10.3814 2.7727 20 6 1.7827 -10.9517 3.9466 21 7 0.5469 -10.6563 4.2899 22 14 2.6129 -12.4664 4.6578 23 1 1.6748 -13.1594 5.5770 24 1 2.9954 -13.3849 3.5554 25 1 3.8286 -12.0588 5.4069 26 6 1.6010 -7.3088 0.7716 27 1 1.4515 -7.7531 -0.2125 28 6 0.2633 -7.2029 1.5065 29 6 1.5757 -2.4477 -0.0049 30 6 2.2308 -1.2083 0.0001 31 1 -0.3632 0.0000 -1.0278 32 1 -0.3632 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6849 2.1163 0.0007 35 1 4.1436 2.0814 -0.0010 36 1 5.4591 -2.3382 -0.0041 37 1 4.3006 -4.4726 -0.0055 38 1 3.6911 -5.0170 1.7917 39 1 4.3072 -6.1847 0.5826 40 1 2.9078 -6.7708 3.2493 41 1 4.4140 -7.4967 2.5953 42 1 0.9496 -8.8100 2.7871 43 1 0.0676 -11.2245 4.9130 44 1 0.4197 -6.7401 2.4809 45 1 -0.4256 -6.5936 0.9213 46 1 -0.1574 -8.1994 1.6409 47 1 0.4968 -2.4937 -0.0079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986312431.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:34 Heat of formation + Delta-G solvation = 26.982361 kcal Electronic energy + Delta-G solvation = -28865.137034 eV Core-core repulsion = 25012.539305 eV Total energy + Delta-G solvation = -3852.597728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.14500 -41.25043 -39.07491 -37.76447 -35.99040 -35.66511 -33.60617 -32.28398 -31.77621 -31.44715 -30.41134 -28.80180 -26.87486 -26.09318 -25.22747 -24.60829 -23.76197 -22.10553 -21.47214 -20.36606 -19.57400 -19.28485 -18.38768 -17.74177 -17.14463 -16.94720 -16.56706 -16.38282 -15.86061 -15.64227 -15.39417 -15.35742 -15.15210 -14.98955 -14.52177 -14.30459 -14.03180 -13.97859 -13.83359 -13.63028 -13.46525 -13.25294 -13.08250 -12.93094 -12.86525 -12.73968 -12.72943 -12.54581 -12.26265 -12.11878 -12.03094 -11.57707 -11.55373 -11.19674 -11.02560 -10.89519 -10.51633 -9.87969 -9.75450 -9.25616 -9.00437 -7.92568 -5.21637 -0.81143 -0.34697 0.83727 1.37959 1.50231 1.52716 1.58500 1.77694 2.14760 2.58672 3.02774 3.22232 3.34324 3.42375 3.47775 3.62458 3.70663 3.77090 3.82159 3.92535 3.99148 4.01327 4.16167 4.24000 4.36716 4.37757 4.44514 4.50034 4.54592 4.61926 4.68977 4.71758 4.74707 4.81223 4.86646 4.89453 4.99607 5.04486 5.12104 5.17827 5.19598 5.22793 5.26604 5.36325 5.47736 5.51153 5.55987 5.75982 6.28784 6.44503 6.88754 6.99251 7.36299 8.09644 8.33186 9.30948 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023491 B = 0.002344 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.652400 B =11943.691224 C =12485.343826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.024 4.024 3 C -0.179 4.179 4 C 0.143 3.857 5 N -0.509 5.509 6 C 0.127 3.873 7 C -0.099 4.099 8 C -0.080 4.080 9 C -0.138 4.138 10 C 0.570 3.430 11 O -0.576 6.576 12 N -0.600 5.600 13 C 0.097 3.903 14 C -0.145 4.145 15 C 0.167 3.833 16 H 0.071 0.929 17 N -0.732 5.732 18 C -0.238 4.238 19 H 0.083 0.917 20 C -0.076 4.076 21 N -0.971 5.971 22 Si 0.973 3.027 23 H -0.301 1.301 24 H -0.278 1.278 25 H -0.276 1.276 26 C 0.135 3.865 27 H 0.070 0.930 28 C -0.145 4.145 29 C -0.037 4.037 30 C -0.128 4.128 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.174 0.826 35 H 0.194 0.806 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.054 0.946 41 H 0.092 0.908 42 H 0.380 0.620 43 H 0.250 0.750 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.074 26.317 -9.733 28.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.032 4.032 3 C -0.198 4.198 4 C -0.028 4.028 5 N -0.219 5.219 6 C 0.006 3.994 7 C -0.118 4.118 8 C -0.099 4.099 9 C -0.141 4.141 10 C 0.360 3.640 11 O -0.457 6.457 12 N -0.332 5.332 13 C -0.024 4.024 14 C -0.186 4.186 15 C 0.057 3.943 16 H 0.089 0.911 17 N -0.375 5.375 18 C -0.369 4.369 19 H 0.100 0.900 20 C -0.268 4.268 21 N -0.622 5.622 22 Si 0.802 3.198 23 H -0.228 1.228 24 H -0.204 1.204 25 H -0.202 1.202 26 C 0.031 3.969 27 H 0.088 0.912 28 C -0.203 4.203 29 C -0.057 4.057 30 C -0.130 4.130 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.192 0.808 35 H 0.211 0.789 36 H 0.176 0.824 37 H 0.178 0.822 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.216 0.784 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.534 26.030 -10.029 28.895 hybrid contribution -1.315 -1.210 0.716 1.925 sum 6.218 24.820 -9.313 27.230 Atomic orbital electron populations 1.21002 0.88336 1.04587 1.04143 1.20597 0.98008 0.91799 0.92767 1.22167 0.95445 0.99662 1.02535 1.23679 0.92370 0.96918 0.89855 1.68124 1.40573 0.98202 1.14952 1.19285 0.89886 0.93414 0.96843 1.20909 1.01416 0.89291 1.00160 1.21428 0.92110 0.99950 0.96432 1.19788 0.95004 0.92051 1.07301 1.18269 0.84130 0.83648 0.77917 1.90744 1.24035 1.84742 1.46152 1.48480 1.20750 1.10417 1.53560 1.22853 0.84126 1.00348 0.95089 1.23399 1.01846 0.95738 0.97627 1.21394 0.91844 0.90356 0.90743 0.91068 1.42857 1.15743 1.27597 1.51328 1.19615 0.97627 1.00774 1.18921 0.89962 1.25551 0.97011 1.02597 1.01669 1.69812 1.12027 1.41257 1.39105 0.85220 0.77164 0.79566 0.77837 1.22762 1.20435 1.20221 1.21618 0.93852 0.82596 0.98865 0.91210 1.21822 0.97143 1.01666 0.99669 1.21447 1.00416 0.90131 0.93692 1.18821 0.94436 0.94331 1.05424 0.89108 0.91422 0.88148 0.80820 0.78901 0.82355 0.82166 0.88716 0.87823 0.92709 0.88914 0.78359 0.94136 0.93386 0.92515 0.92128 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 9.59 71.24 0.68 -0.73 16 2 C -0.02 -0.38 5.92 -19.60 -0.12 -0.49 16 3 C -0.18 -2.04 9.72 22.14 0.22 -1.83 16 4 C 0.14 1.91 11.14 85.04 0.95 2.86 16 5 N -0.51 -10.27 10.33 -188.46 -1.95 -12.21 16 6 C 0.13 2.79 6.61 40.37 0.27 3.06 16 7 C -0.10 -1.94 9.95 22.30 0.22 -1.72 16 8 C -0.08 -1.60 7.79 22.27 0.17 -1.43 16 9 C -0.14 -3.54 5.58 -20.10 -0.11 -3.65 16 10 C 0.57 17.98 7.31 86.76 0.63 18.62 16 11 O -0.58 -22.12 15.77 -3.90 -0.06 -22.18 16 12 N -0.60 -17.95 3.08 -791.51 -2.44 -20.39 16 13 C 0.10 2.26 5.07 86.86 0.44 2.71 16 14 C -0.15 -4.41 6.77 31.99 0.22 -4.19 16 15 C 0.17 6.16 3.46 46.18 0.16 6.32 16 16 H 0.07 2.55 8.12 -2.39 -0.02 2.53 16 17 N -0.73 -35.34 5.02 -317.32 -1.59 -36.93 16 18 C -0.24 -12.57 9.98 84.03 0.84 -11.74 16 19 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 20 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 21 N -0.97 -58.72 13.06 21.65 0.28 -58.44 16 22 Si 0.97 45.10 29.55 68.60 2.03 47.12 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 26 C 0.13 4.75 3.46 45.34 0.16 4.91 16 27 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 28 C -0.14 -5.62 7.95 71.98 0.57 -5.05 16 29 C -0.04 -0.90 8.88 22.82 0.20 -0.69 16 30 C -0.13 -2.76 5.74 -21.29 -0.12 -2.88 16 31 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.07 0.92 6.52 -2.39 -0.02 0.90 16 33 H 0.10 0.66 8.10 -2.39 -0.02 0.64 16 34 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 35 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.16 2.53 5.09 -2.91 -0.01 2.51 16 38 H 0.09 1.90 6.49 -2.39 -0.02 1.89 16 39 H 0.10 1.78 7.18 -2.39 -0.02 1.77 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.38 19.89 4.92 -92.71 -0.46 19.44 16 43 H 0.25 14.79 8.31 -92.71 -0.77 14.01 16 44 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 45 H 0.06 2.20 6.87 -2.38 -0.02 2.18 16 46 H 0.06 2.60 6.67 -2.39 -0.02 2.58 16 47 H 0.14 3.29 6.33 -2.92 -0.02 3.28 16 Total: -1.00 -72.69 375.82 2.67 -70.03 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: 0.55 Total: 32.74 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 5.85 Total: 0.27 kcal Atomic # 7 Polarization: -122.28 SS G_CDS: -5.70 Total: -127.98 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.06 Total: -22.18 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -72.69 2.67 -70.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986312431.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.008 kcal (2) G-P(sol) polarization free energy of solvation -72.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds